BAC Information

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BAC

Clone NameB6Ng01-022A24
Chromosome12 (Build37)
Map Location 99,928,253 - 100,121,580
singlet/doubletdoublet
Overlap genePtpn21, Zc3h14, Eml5
Upstream geneLOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10, Spata7
Downstream geneLOC100039845, Ttc8, EG667779, Ches1, LOC100039892, 2610021K21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022A24.bB6Ng01-022A24.g
ACCDH854393DH854394
length888755
definitionDH854393|Mus musculus domesticus DNA, BAC clone: B6Ng01-022A24, 5' end.DH854394|Mus musculus domesticus DNA, BAC clone: B6Ng01-022A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,120,677 - 100,121,580)(99,928,253 - 99,929,002)
sequence
gaattcacatccttgtaaatggtaagtgctttggttaccattaaaatgct
tgcttcatatctttttgtaaagttttctgtatgtcacagcagtggtcaaa
ttcagactgtgatgtttcttcttgactagaattccatcttccatgttaac
tcatcatgtcaactgcgtcttcttatctctttctaatttattcaactctt
caatggagtttttagcttcatctcatctacttttcattggaagaagtcct
gtgtttctctgtgcatctttaagtactttttatactttgctactctttgt
tcttctgtggatattctgaaactttagttatatattttttgtgtatgtta
agcttgttttatattgtttatctaattccaggcttgtgtgttttgttcat
tgtcgagacctgcttatcttccttctggtctcagctccctgggttgtgct
ggaaggtctggtttgttttcaggctgtagcttattcttactgaatttcta
tctgtaggagttcattaaaggatggagtaaaagtcgcgttaccccacatt
tgatttgtattgcctgtactgtgctactgaaatttctcaaaaaacatgcc
agatccttggaagccctctaaaagggattccccacttgagggttcatgac
cagggtaaactcagtcactacagtgtgagggctgcttgagcttttagatg
ttcatgaagagttttcttcttcttccacaattacccatttttttgagaag
gaattcttctcatggttcctcttctgagaagcctattccttagtcagact
ccagtccaatcctctctgggcagatccctggacttctccatatcctctcc
agcttcataaaacaacaatcacaacaatgaaccaaaga
gaattccaccgtaaaagggcaccacggtgtacagcaggtacaaagctttc
ctgcccaacacgggggtcactggtagtcagaaccaaaagttaccgccaaa
ggccaggaaaccaagaagaataaggctaagataactatagttgccccacc
aagcctgcagttgagcaagacatggatccagggctcctaactctccggca
gcagtatgtctgtctggactagaggcggctgtctttctgccactcgacct
acagctcccctgaactgctttctgagtactatttccaaagctaaacacaa
agtcagccgtcaaagcccgtggaaatactgtgtgctgctgaagctccgtg
actacccactgggcacgttttgttctgctacacacagctctcagagcctc
ttcattcctcctgccccaccctgtgcttctctgtctgcagagctctcagc
cattgctagatctctaggtgcctttctggtcacagatccctcacccatgt
tgcctagaccagtgtgacacccacggcagtgtccctgccttcatgctctc
taagagcacacagaactgtacctcttttatcccttagtgccgagcacata
catgagacgagtgacaggaaggagaaaagtgagcagagggttttttgttt
ggttggttttttggtttttggttttttcaagacagggtttctctgtgtag
cctttggttgtcctggaactcattcttgtagacaggctggcctcgaactc
agaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_100120677_100121580
seq2: B6Ng01-022A24.b_44_931 (reverse)

seq1  TCTTTGGGTTCATTTGTTTGTTGATTTGTTGTTTTATTGAAAGCTGGAGA  50
      ||||| |||||| |||||   ||| ||||||||||||   ||||||||||
seq2  TCTTT-GGTTCA-TTGTT--GTGA-TTGTTGTTTTAT--GAAGCTGGAGA  43

seq1  GGAATATGGGAGAAAGTCCAGGGAATCTGCCCAAGAGAGGGATTGGACTG  100
      || |||| |||| |||||||||| |||||||| ||||| |||||||||||
seq2  GG-ATAT-GGAG-AAGTCCAGGG-ATCTGCCC-AGAGA-GGATTGGACTG  87

seq1  GAGTCTGACTAAAGGAATAGGCTTCTCAGAAGAGGAACCATGAGAAGTAA  150
      |||||||||| |||||||||||||||||||||||||||||||||||| ||
seq2  GAGTCTGACT-AAGGAATAGGCTTCTCAGAAGAGGAACCATGAGAAG-AA  135

seq1  TTCCTTCTCAAAAAAATGGGTAATTGTGGAAGAAGAAGAAAACTCTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTCAAAAAAATGGGTAATTGTGGAAGAAGAAGAAAACTCTTCAT  185

seq1  GAACATCTAAAAGCTCAAGCAGCCCTCACACTGTAGTGACCTGAGTTTAC  250
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAACATCTAAAAGCTCAAGCAGCCCTCACACTGTAGTGA-CTGAGTTTAC  234

seq1  CCTGGTCATGAACCCTCAAGTGGGGAATCCCTTTTAGAGGGCTTCCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCATGAACCCTCAAGTGGGGAATCCCTTTTAGAGGGCTTCCAAGG  284

seq1  ATCTGGCATGTTTTTTGAGAAATTTCAGTAGCACAGTACAGGCAATACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCATGTTTTTTGAGAAATTTCAGTAGCACAGTACAGGCAATACAA  334

seq1  ATCAAATGTGGGGTAACGCGACTTTTACTCCATCCTTTAATGAACTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATGTGGGGTAACGCGACTTTTACTCCATCCTTTAATGAACTCCTA  384

seq1  CAGATAGAAATTCAGTAAGAATAAGCTACAGCCTGAAAACAAACCAGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGAAATTCAGTAAGAATAAGCTACAGCCTGAAAACAAACCAGACC  434

seq1  TTCCAGCACAACCCAGGGAGCTGAGACCAGAAGGAAGATAAGCAGGTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCACAACCCAGGGAGCTGAGACCAGAAGGAAGATAAGCAGGTCTC  484

seq1  GACAATGAACAAAACACACAAGCCTGGAATTAGATAAACAATATAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGAACAAAACACACAAGCCTGGAATTAGATAAACAATATAAAACA  534

seq1  AGCTTAACATACACAAAAAATATATAACTAAAGTTTCAGAATATCCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAACATACACAAAAAATATATAACTAAAGTTTCAGAATATCCACAG  584

seq1  AAGAACAAAGAGTAGCAAAGTATAAAAAGTACTTAAAGATGCACAGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAAAGAGTAGCAAAGTATAAAAAGTACTTAAAGATGCACAGAGAA  634

seq1  ACACAGGACTTCTTCCAATGAAAAGTAGATGAGATGAAGCTAAAAACTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGACTTCTTCCAATGAAAAGTAGATGAGATGAAGCTAAAAACTCC  684

seq1  ATTGAAGAGTTGAATAAATTAGAAAGAGATAAGAAGACGCAGTTGACATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGAGTTGAATAAATTAGAAAGAGATAAGAAGACGCAGTTGACATG  734

seq1  ATGAGTTAACATGGAAGATGGAATTCTAGTCAAGAAGAAACATCACAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTAACATGGAAGATGGAATTCTAGTCAAGAAGAAACATCACAGTC  784

seq1  TGAATTTGACCACTGCTGTGACATACAGAAAACTTTACAAAAAGATATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTGACCACTGCTGTGACATACAGAAAACTTTACAAAAAGATATGA  834

seq1  AGCAAGCATTTTAATGGTAACCAAAGCACTTACCATTTACAAGGATGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCATTTTAATGGTAACCAAAGCACTTACCATTTACAAGGATGTGA  884

seq1  ATTC  904
      ||||
seq2  ATTC  888

seq1: chr12_99928253_99929002
seq2: B6Ng01-022A24.g_65_819

seq1  GAATTCCACCGTAAAAGGGCACCACGGTGTACAGCAGGTACAAAGCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCGTAAAAGGGCACCACGGTGTACAGCAGGTACAAAGCTTTC  50

seq1  CTGCCCAACACGGGGGTCACTGGTAGTCAGAACCAAAAGTTACCGCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCAACACGGGGGTCACTGGTAGTCAGAACCAAAAGTTACCGCCAAA  100

seq1  GGCCAGGAAACCAAGAAGAATAAGGCTAAGATAACTATAGTTGCCCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGAAACCAAGAAGAATAAGGCTAAGATAACTATAGTTGCCCCACC  150

seq1  AAGCCTGCAGTTGAGCAAGACATGGATCCAGGGCTCCTAACTCTCCGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGCAGTTGAGCAAGACATGGATCCAGGGCTCCTAACTCTCCGGCA  200

seq1  GCAGTATGTCTGTCTGGACTAGAGGCGGCTGTCTTTCTGCCACTCGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATGTCTGTCTGGACTAGAGGCGGCTGTCTTTCTGCCACTCGACCT  250

seq1  ACAGCTCCCCTGAACTGCTTTCTGAGTACTATTTCCAAAGCTAAACACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCCCCTGAACTGCTTTCTGAGTACTATTTCCAAAGCTAAACACAA  300

seq1  AGTCAGCCGTCAAAGCCCGTGGAAATACTGTGTGCTGCTGAAGCTCCGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCCGTCAAAGCCCGTGGAAATACTGTGTGCTGCTGAAGCTCCGTG  350

seq1  ACTACCCACTGGGCACGTTTTGTTCTGCTACACACAGCTCTCAGAGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCCACTGGGCACGTTTTGTTCTGCTACACACAGCTCTCAGAGCCTC  400

seq1  TTCATTCCTCCTGCCCCACCCTGTGCTTCTCTGTCTGCAGAGCTCTCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCCTCCTGCCCCACCCTGTGCTTCTCTGTCTGCAGAGCTCTCAGC  450

seq1  CATTGCTAGATCTCTAGGTGCCTTTCTGGTCACAGATCCCTCACCCATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTAGATCTCTAGGTGCCTTTCTGGTCACAGATCCCTCACCCATGT  500

seq1  TGCCTAGACCAGTGTGACACCCACGGCAGTGTCCCTGCCTTCATGCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGACCAGTGTGACACCCACGGCAGTGTCCCTGCCTTCATGCTCTC  550

seq1  TAAGAGCACACAGAACTGTACCTC-TTTATCCCTTAGTGCCGAGCACATA  599
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAAGAGCACACAGAACTGTACCTCTTTTATCCCTTAGTGCCGAGCACATA  600

seq1  CATGAGACGAGTGACAGGAAGGAG-AAAGTGAGCAGAGGGTTTTTTGTTT  648
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CATGAGACGAGTGACAGGAAGGAGAAAAGTGAGCAGAGGGTTTTTTGTTT  650

seq1  GGTTGGTTTTTTGGTTTTTGG-TTTTTCAAGACAGGGTTTCTCTGTGTAG  697
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGTTGGTTTTTTGGTTTTTGGTTTTTTCAAGACAGGGTTTCTCTGTGTAG  700

seq1  CC-TTGGTTGTCCTGGAACTCACTC-TGTAGACAGGCTGGCCTCGAACTC  745
      || ||||||||||||||||||| || ||||||||||||||||||||||||
seq2  CCTTTGGTTGTCCTGGAACTCATTCTTGTAGACAGGCTGGCCTCGAACTC  750

seq1  AGAAA  750
      |||||
seq2  AGAAA  755