BAC Information

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BAC

Clone NameB6Ng01-022D03
Chromosome12 (Build37)
Map Location 117,317,862 - 117,318,920
singlet/doubletsinglet
Overlap geneVipr2
Upstream geneIgh, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386
Downstream geneLOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, Ptprn2, LOC627375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022D03.bB6Ng01-022D03.g
ACCDH854481DH854482
length1,053951
definitionDH854481|Mus musculus domesticus DNA, BAC clone: B6Ng01-022D03, 5' end.DH854482|Mus musculus domesticus DNA, BAC clone: B6Ng01-022D03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagacatgtgctattattccctgggaactagagtcaccttttcag
agcattccagagccataacattatgttaggaacagttacctcagcaagcc
atggaaactgttggtgtaaagcattgaggttttcttttaaaaggtttgct
gaaatccccactgtcacaaggctacattagttttgcttgtggcccaccag
aacagtagcaagtggttctaattttttttaaggtgtaggtgacctccaac
ccctcaaggggctgagaagtatagacagctaggatcccactcccagactt
aatccccaaacctacctctctgattctccgtttggctgcttagcagctct
gcacattttgtctcttcttcttgtatttctagatgaaagcgacattctgg
atggatgctgctcacctgttcaagtgaaagaaatagaagtaactaaaaat
gacacaagagagggttaagcaaaaatctacaggaagatccaacgcttcac
ctttctaaatttctttgaagctgaaattcatttcaaatcagctatttcat
tttcctgatgtggttatttaaaaaaaaagaagaaaaactttactattttg
tgaaacaaacataaaatccaatagaatactttttctgagcaggagagtaa
actgacattgtatgttgttattactaacttaagagcaatgggctgttaga
aatgttcatctctcagaattgaagagctcccatttcatagtctatggttt
gcttaagtaaagcaagttaactcttagtggctgtgggtgtgcacagacac
tctgtgtacctggggatcctctctgtggtcaccctagagtcagaataggt
taagtgaacttttctacgcttcagggcacattcaaacttaaccctactcg
tactggtaacattgttatcattgagcagcttggtgtgaaacactttttta
gaatgagagggattggatggaagaggcagcgctgagagaaacagatctga
tccatgagcctggaaggtttctgcaaagctttcacggatccttaggactg
aag
gaattcttcacagagttagaaagtaatgctgaattatatctggaataaca
aaaaaccaggatcccacaaaacatctgcaacaataaaatatcgtctggtg
ggattaccattcttgacctcaagctgtactacagggcatttgtgattaaa
aacaaaaacaaaaacatggtgttggtacagaaaagtagatcaatggaata
gaattgaagacccaggaaatgagcccacacaactatggtcacttgatcct
tgacaaaggagccaaatccatccagtggacaaagggctgtattatccaca
aatggttcaactgggggtcagcatgtaggagaatgcaaataacccattct
tatctccctgtacaaagcttaagtccaagtagataaaagatttccacata
aaaccagacaatatgaatctaatagaagagaaagtgggaaaggtctttga
aaacattggcacaggtttctagaacagagcagtcttatactttaaaatca
agaatttacaaaagggacttcataaaattgcaaagcttctgtaaggcaaa
ggacactgttaataggacaaaatggcaatccaaagactgagaaaagatct
ttaccaaccccacaatttatagagggatgatatccaatatgttgtacaaa
gaactcaagaagttagaatccagagaatcaaatgaccctattaaaaatgg
gatacaaagctaaaataggaattctcaactgaggaatctcaaatgcctga
gaatcacttaaagaaatgttcaatatccttagtcattagggaaatgcaaa
gcataacaaccctgaaatttccacctcacacgagtcagaatgggctaata
tcaaaaattcaggcaacagaagatgatgggagaggatgtggggaagagga
cagtcttccatggtggtgtatgcagtaggtacaacctctctgtaatcaat
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_117317862_117318920
seq2: B6Ng01-022D03.b_46_1098 (reverse)

seq1  CTTCAGTGCCTAAGGACTCCGTGAAAGCTTTGCAGAAACCTTCCATGGCT  50
      ||||||| |||||||| |||||||||||||||||||||||||||| ||||
seq2  CTTCAGT-CCTAAGGA-TCCGTGAAAGCTTTGCAGAAACCTTCCA-GGCT  47

seq1  CCTTGGATCAGATCTGTTTCTCTCAGCGCTGCCTCTTCCATCCAATCCCT  100
       | |||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CATGGATCAGATCTGTTTCTCTCAGCGCTGCCTCTTCCATCCAATCCCT  96

seq1  CTCATTCTTAAAAAAGTGTTTCACACCAAGCTGCTCAATGATAACAATGT  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTC-TAAAAAAGTGTTTCACACCAAGCTGCTCAATGATAACAATGT  145

seq1  TACCAGTACGAGTAGGGTTAAGTTTTGAATGTGCCCTGAAGCGTATGAAA  200
      |||||||||||||||||||||| ||||||||||||||||||||||  |||
seq2  TACCAGTACGAGTAGGGTTAAG-TTTGAATGTGCCCTGAAGCGTAGAAAA  194

seq1  GTTCACTTAACCTATTCTGACTCTAGGGTGACCACAGAGAGGATCCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTTAACCTATTCTGACTCTAGGGTGACCACAGAGAGGATCCCCAG  244

seq1  GTACACAGAGTGTCTGTGCACACCCACAGCCACTAAGAGTTAACTTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAGAGTGTCTGTGCACACCCACAGCCACTAAGAGTTAACTTGCTT  294

seq1  TACTTAAGCAAACCATAGACTATGAAATGGGAGCTCTTCAATTCTGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAGCAAACCATAGACTATGAAATGGGAGCTCTTCAATTCTGAGAG  344

seq1  ATGAACATTTCTAACAGCCCATTGCTCTTAAGTTAGTAATAACAACATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATTTCTAACAGCCCATTGCTCTTAAGTTAGTAATAACAACATAC  394

seq1  AATGTCAGTTTACTCTCCTGCTCAGAAAAAGTATTCTATTGGATTTTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGTTTACTCTCCTGCTCAGAAAAAGTATTCTATTGGATTTTATG  444

seq1  TTTGTTTCACAAAATAGTAAAGTTTTTCTTCTTTTTTTTTAAATAACCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCACAAAATAGTAAAGTTTTTCTTCTTTTTTTTTAAATAACCAC  494

seq1  ATCAGGAAAATGAAATAGCTGATTTGAAATGAATTTCAGCTTCAAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGAAAATGAAATAGCTGATTTGAAATGAATTTCAGCTTCAAAGAAA  544

seq1  TTTAGAAAGGTGAAGCGTTGGATCTTCCTGTAGATTTTTGCTTAACCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAGGTGAAGCGTTGGATCTTCCTGTAGATTTTTGCTTAACCCTC  594

seq1  TCTTGTGTCATTTTTAGTTACTTCTATTTCTTTCACTTGAACAGGTGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGTCATTTTTAGTTACTTCTATTTCTTTCACTTGAACAGGTGAGC  644

seq1  AGCATCCATCCAGAATGTCGCTTTCATCTAGAAATACAAGAAGAAGAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCATCCAGAATGTCGCTTTCATCTAGAAATACAAGAAGAAGAGAC  694

seq1  AAAATGTGCAGAGCTGCTAAGCAGCCAAACGGAGAATCAGAGAGGTAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGCAGAGCTGCTAAGCAGCCAAACGGAGAATCAGAGAGGTAGGT  744

seq1  TTGGGGATTAAGTCTGGGAGTGGGATCCTAGCTGTCTATACTTCTCAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGATTAAGTCTGGGAGTGGGATCCTAGCTGTCTATACTTCTCAGCC  794

seq1  CCTTGAGGGGTTGGAGGTCACCTACACCTTAAAAAAAATTAGAACCACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGGGGTTGGAGGTCACCTACACCTTAAAAAAAATTAGAACCACTT  844

seq1  GCTACTGTTCTGGTGGGCCACAAGCAAAACTAATGTAGCCTTGTGACAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGTTCTGGTGGGCCACAAGCAAAACTAATGTAGCCTTGTGACAGT  894

seq1  GGGGATTTCAGCAAACCTTTTAAAAGAAAACCTCAATGCTTTACACCAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTTCAGCAAACCTTTTAAAAGAAAACCTCAATGCTTTACACCAAC  944

seq1  AGTTTCCATGGCTTGCTGAGGTAACTGTTCCTAACATAATGTTATGGCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCATGGCTTGCTGAGGTAACTGTTCCTAACATAATGTTATGGCTC  994

seq1  TGGAATGCTCTGAAAAGGTGACTCTAGTTCCCAGGGAATAATAGCACATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGCTCTGAAAAGGTGACTCTAGTTCCCAGGGAATAATAGCACATG  1044

seq1  TCTGAATTC  1059
      |||||||||
seq2  TCTGAATTC  1053