BAC Information

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BAC

Clone NameB6Ng01-024G11
Chromosome6 (Build37)12 (Build37)
Map Location 33,428,580 - 33,428,90457,410,805 - 57,410,907
singlet/doubletsingletsinglet
Overlap geneExoc4
Upstream genePlxna4, Chchd3, LOC100039118, Gm1401
Downstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024G11.bB6Ng01-024G11.g
ACCDH856049DH856050
length325571
definitionDH856049|Mus musculus domesticus DNA, BAC clone: B6Ng01-024G11, 5' end.DH856050|Mus musculus domesticus DNA, BAC clone: B6Ng01-024G11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(33,428,580 - 33,428,904)(57,410,805 - 57,410,907)
sequence
ttcttcttctgaataacaaataatatattatcatatataccacattgtag
gagggaatgatgaaagccatatttgaaaatgaaagtttaatatttggggc
tcattgggcacaattatagttggtactctctttttttcaaggaaatcata
attccatgtgcagagttttcaaaaatagaatgacatgcagcacagaggaa
tgtattcaagagggaaagaatggctttcttttgcttattcttccctccct
tcctcccttcctccctgtcttcctccctttctcttcctctccctctcctt
tcctctccctcccctcccctcccct
gaattcagatgtcctgtctctttcttagatacttcaattcatcttagagg
tgggggaacaaaacacccatggaaggagttacagagacaaagtgtggaat
agagactgaagcaatgaccatccagagactgccccacctggggatccatt
ccatagacaatcaccaaacccagacactgttgtggatgccaaaaagtgct
taatgacaggagcctgatatagctgtctcctgagaggctctgccagtaca
tgacaaatataaaagtggatgctcacagccattcattggactgagcatac
ggttcccaatgaaggagagagagagaaaggacctaaggagctgaaggggc
ttgcagccccataggggtaacaacaatatgaactagccagtacccccaga
gctcccagggactaaaccaccaatcaaatatcacacatggtgggactcat
gcctccagctacatatgtatcagaggatggcctagaaggacatcaatggg
aggagaggaccttggtcctgttctatgccctagtatgggggaatgccagg
gccaggaagcaggagtgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_33428580_33428904
seq2: B6Ng01-024G11.b_44_368

seq1  TTCTTCTTCTGAATAACAAATAATATATTATCATATATACCACATTGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTGAATAACAAATAATATATTATCATATATACCACATTGTAG  50

seq1  GAGGGAATGATGAAAGCCATATTTGAAAATGAAAGTTTAATATTTGGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAATGATGAAAGCCATATTTGAAAATGAAAGTTTAATATTTGGGGC  100

seq1  TCATTGGGCACAATTATAGTTGGTACTCTCTTTTTTTCAAGGAAATCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGGCACAATTATAGTTGGTACTCTCTTTTTTTCAAGGAAATCATA  150

seq1  ATTCCATGTGCAGAGTTTTCAAAAATAGAATGACATGCAGCACAGAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATGTGCAGAGTTTTCAAAAATAGAATGACATGCAGCACAGAGGAA  200

seq1  TGTATTCAAGAGGGAAAGAATGGCTTTCTTTTGCTTATTCTTCCCTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCAAGAGGGAAAGAATGGCTTTCTTTTGCTTATTCTTCCCTCCCT  250

seq1  TCCTCCCTTCCTCCCTGTCTTCCTCCCTTTCTCTTCCTCTCCCTCTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTTCCTCCCTGTCTTCCTCCCTTTCTCTTCCTCTCCCTCTCCTT  300

seq1  TCCTCTCCCTCCCCTCCCCTCCCCT  325
      |||||||||||||||||||||||||
seq2  TCCTCTCCCTCCCCTCCCCTCCCCT  325

seq1: chr12_57410805_57410907
seq2: B6Ng01-024G11.g_559_639 (reverse)

seq1  CACCCACTCATGCTTCTTGGCCCTGGCATTCCCCAATACTGGGGCATAGA  50
      ||||||||| |||||| ||||||||||||||||| ||||| |||||||||
seq2  CACCCACTCCTGCTTCCTGGCCCTGGCATTCCCCCATACTAGGGCATAGA  50

seq1  ACCTTTACAGGACCAAGGGTCTCTCCTCTCATTGATCTCTCCTCCCATTG  100
            ||||||||||||          ||      ||||||||||||||
seq2  ------ACAGGACCAAGG----------TC------CTCTCCTCCCATTG  78

seq1  ATG  103
      |||
seq2  ATG  81