BAC Information

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BAC

Clone NameB6Ng01-024K17
Chromosome12 (Build37)
Map Location 28,516,408 - 28,517,399
singlet/doubletsinglet
Overlap genenone
Upstream geneSox11, LOC100043009
Downstream geneLOC669327, 1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024K17.g
ACCDH856234
length982
definitionDH856234|Mus musculus domesticus DNA, BAC clone: B6Ng01-024K17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgccatgtgtgcttgctcattggcaaggtcaccacagtttct
atgtgtgtggaatagaggagaggctgaaggaaggctacacgcattccatc
atgccctggagagagagctccacctttggacttcagtttgaaaagaaggt
agagaacatggctctgctcctggtcctgggtgtgaaagctagcttacagt
tacctaggtggcttgctgctgtgtcaccacatcactatgaagaaatgtgg
gggtgcctttggatcccaggacataataagcctttctggcacacggaaga
aaacccaaaacacaagagtgtgcagtctaccgctgcatacagtctgtgaa
cagcttcccttctcagcccagtcagtaggtgcagatggtgctcagaatta
accctaaaaggactgcactgtgcttcaacttgagaaggaagatgtgtcac
actctgaatgtgtgcatacaatatcggcacttgggagttaaggttcagtg
agcatcttcatctctccctccccacccttatttcaactcagccttcattc
cagtttccccacttctcatgagaccctccctcccctccccaagggtgaga
aaaccaacctccacctcttaattccattatgtctataagcagcagccttc
ctctcaggcaggaaattcccttcatttgaaaatttttagatctatggttt
ctcctgcagtatgcaagcttctgcatcctgatcctaatgcctagttgtgt
ctactctctccttcccaaggcatctgagagatcctctttccctgcattgt
cagccttgatctcactccatgccaccctacaaatgatctctcccctctct
tgtcagaactcagaaccttctctggcacccacctgtggagctttctgagg
aggcatacattattatttccatagatacagaagagagacatgagtggaga
tggaagaaaaaagaaatggggttggagacagg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_28516408_28517399
seq2: B6Ng01-024K17.g_69_1050 (reverse)

seq1  CCTGTCTCCTTACCCCATCTTCTCTTTTCTTCCATCTCCACTCATGTCTC  50
      |||||||||  ||||||| |||| ||||||||||||||||||||||||||
seq2  CCTGTCTCC-AACCCCAT-TTCTTTTTTCTTCCATCTCCACTCATGTCTC  48

seq1  TTCTTCTGTATCTATGGAAATAATATTGTATGGCCTCCCTCAGAAAGCCT  100
       |||||||||||||||||||||||| ||||| |||| |||||||||||  
seq2  -TCTTCTGTATCTATGGAAATAATAATGTAT-GCCT-CCTCAGAAAGC--  93

seq1  CCCACAGGTGGGTGCCAGAAGAAGGTTCTGAGTTCTGACAAGAGAGGGGA  150
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCCACAGGTGGGTGCCAG-AGAAGGTTCTGAGTTCTGACAAGAGAGGGGA  142

seq1  GAGATCATTTTGTAGGGTGGCATGGAGTTGAGATCAAGGCTGACAATGCA  200
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  GAGATCA-TTTGTAGGGTGGCATGGAG-TGAGATCAAGGCTGACAATGCA  190

seq1  GGGAAAGAGGATCTCTCAGATGCCTTGGGAAGGAGAGAGTAGACACAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGAGGATCTCTCAGATGCCTTGGGAAGGAGAGAGTAGACACAACT  240

seq1  AGGCCTTAGGATCAGGATGCAGAAGCTTGCATACTGCAGGAGAAACCATA  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTAGGATCAGGATGCAGAAGCTTGCATACTGCAGGAGAAACCATA  290

seq1  GATCTAAAAATTTTCAAATGAAGGGAATTTCCTGCCTGAGAGGAAGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAAAAATTTTCAAATGAAGGGAATTTCCTGCCTGAGAGGAAGGCTG  340

seq1  CTGCTTATAGACATAATGGAATTAAGAGGTGGAGGTTGGTTTTCTCACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTATAGACATAATGGAATTAAGAGGTGGAGGTTGGTTTTCTCACCC  390

seq1  TTGGGGAGGGGAGGGAGGGTCTCATGAGAAGTGGGGAAACTGGAATGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAGGGGAGGGAGGGTCTCATGAGAAGTGGGGAAACTGGAATGAAG  440

seq1  GCTGAGTTGAAATAAGGGTGGGGAGGGAGAGATGAAGATGCTCACTGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTTGAAATAAGGGTGGGGAGGGAGAGATGAAGATGCTCACTGAAC  490

seq1  CTTAACTCCCAAGTGCCGATATTGTATGCACACATTCAGAGTGTGACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTCCCAAGTGCCGATATTGTATGCACACATTCAGAGTGTGACACA  540

seq1  TCTTCCTTCTCAAGTTGAAGCACAGTGCAGTCCTTTTAGGGTTAATTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTCTCAAGTTGAAGCACAGTGCAGTCCTTTTAGGGTTAATTCTG  590

seq1  AGCACCATCTGCACCTACTGACTGGGCTGAGAAGGGAAGCTGTTCACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCATCTGCACCTACTGACTGGGCTGAGAAGGGAAGCTGTTCACAGA  640

seq1  CTGTATGCAGCGGTAGACTGCACACTCTTGTGTTTTGGGTTTTCTTCCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGCAGCGGTAGACTGCACACTCTTGTGTTTTGGGTTTTCTTCCGT  690

seq1  GTGCCAGAAAGGCTTATTATGTCCTGGGATCCAAAGGCACCCCCACATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGAAAGGCTTATTATGTCCTGGGATCCAAAGGCACCCCCACATTT  740

seq1  CTTCATAGTGATGTGGTGACACAGCAGCAAGCCACCTAGGTAACTGTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAGTGATGTGGTGACACAGCAGCAAGCCACCTAGGTAACTGTAAG  790

seq1  CTAGCTTTCACACCCAGGACCAGGAGCAGAGCCATGTTCTCTACCTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTTCACACCCAGGACCAGGAGCAGAGCCATGTTCTCTACCTTCTT  840

seq1  TTCAAACTGAAGTCCAAAGGTGGAGCTCTCTCTCCAGGGCATGATGGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTGAAGTCCAAAGGTGGAGCTCTCTCTCCAGGGCATGATGGAAT  890

seq1  GCGTGTAGCCTTCCTTCAGCCTCTCCTCTATTCCACACACATAGAAACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTAGCCTTCCTTCAGCCTCTCCTCTATTCCACACACATAGAAACTG  940

seq1  TGGTGACCTTGCCAATGAGCAAGCACACATGGCAAAGAATTC  992
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACCTTGCCAATGAGCAAGCACACATGGCAAAGAATTC  982