BAC Information

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BAC

Clone NameB6Ng01-027B11
Chromosome12 (Build37)
Map Location 26,292,922 - 26,415,828
singlet/doubletdoublet
Overlap geneLOC100042974
Upstream geneGrhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719, Mboat2, EG629397, C330002I19Rik, Id2, LOC100042973
Downstream geneLOC668726, Rnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027B11.bB6Ng01-027B11.g
ACCDH857933DH857934
length1,114414
definitionDH857933|Mus musculus domesticus DNA, BAC clone: B6Ng01-027B11, 5' end.DH857934|Mus musculus domesticus DNA, BAC clone: B6Ng01-027B11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,414,701 - 26,415,828)(26,292,922 - 26,293,341)
sequence
gaattccctctttgatccagacgttatataagggccatttccatatttta
taatttctaatgatggagacattgctttgctcttttgtcatcgctattgt
aacttgctcacatctgaattattcttgtctacttatcgcttggctgacaa
ggatattgttttaattttcaagtgtaatgtctgagtgacttctttgtggc
tgtttttgatgtctaccattctagccagacttccctgtgttggctttccg
ggggtgcacataaaatcaccacaaacttagcaaattaaaacaagagccac
caatcatctcatagtgggtcagaggcctggggtccaattcaatcaagtcc
tcttcttggacctgcaagactgagtctggagtccctgagtgctatgtgag
gcccactgtgctcaccaagtctactgggtgctaaaagaacaagtcaccca
cagtaactggtatattaaggcagcaaacaaactccaggaagcacccaccc
cctttacctctgttgattaactaagaaaactgattcaagaactttaacca
ttccttccaaactccttcctctttgctatacatgtgatctaggtcaggac
tgacaagtcatcctagtttgaaacccaaacaccctccagcctagcgcttc
actgattttacccattccattgcaagaggtctttttcttttcacccgtgc
tttgaagcacatttaatctataaaggtaccttctaaaggtaccggtgcca
tacttctccatgaactcttattaagagaccagagactgcttctccagcct
aggctgacatcatcttcccacaggtttcctgatcaccgccagacttaatc
tttctcacatgtgcttcatggacaagaatgtttcagctttacctactctc
tcttatctcctctgaccactgatgtctgccaagatcctttcatactgctc
cagcttcagctcacaattcgtcatgtggtgaatatgagtttctcttcagt
gtatgtggtcacccttgccactccatatataatatgcacagagattggat
gttgcttcataggaggaccctggtctctctgtatcctgcttataaggtgt
aaacggacacaata
acagttgaggtgacggggtgggtggggagatcttgaactgtgtgtttttg
tcaaggttacatttctgctactgatcccagcccagctctcctctacctac
gctaacttctgacttccttttcctttcttctttctttttccttcccttcc
ttttatgttgtcatgtttccatgtgtgcatttgtaaagtagtgggtttca
tgatggcgttttcatacatgtgtgcctttatgcttagttttcactgattc
cccttccctaacgcctttccacgtgtccctgccactctgtatctgagtcc
cttccttctcccaattaaattcttttttttctgatcacttctttcttgtt
agcatctcccttaaaggtctttcccactctctctctctctctctctctct
ctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_26414701_26415828
seq2: B6Ng01-027B11.b_43_1156 (reverse)

seq1  TATTGTGTCGCTTTTACACCTACTTAATGCAGGGCATCAATGGAGCACCA  50
      ||||||||| | |||||||||  |  | |||||  ||  |  ||| ||||
seq2  TATTGTGTC-CGTTTACACCT--TATAAGCAGG--ATACAGAGAG-ACCA  44

seq1  AGGTCCTCCCACTGAGCCACACTCCAATCTCTGTGCATA-TATATAGTGA  99
       |||||||| |   ||| ||| ||||||||||||||||| ||||||  ||
seq2  GGGTCCTCCTATGAAGCAACA-TCCAATCTCTGTGCATATTATATATGGA  93

seq1  GTGGCAGGTGTGACCACATACACTGAAGAGAAACTCATATTCA-CACATG  148
      |||||| | |||||||||||||||||||||||||||||||||| ||||||
seq2  GTGGCAAGGGTGACCACATACACTGAAGAGAAACTCATATTCACCACATG  143

seq1  ACCGAATTGTGAAGCTGGAAGCTGGGAGCAGTATTGAAGGGATCCTTGGG  198
      | ||||||||| |||| |||||| ||||||||| |||| |||||  | ||
seq2  A-CGAATTGTG-AGCT-GAAGCT-GGAGCAGTA-TGAAAGGATC--TTGG  186

seq1  CAGACATCAGTGGTCAGAGGAGATAAGGAGAGAGTAGGTAAAGCCTGAAA  248
      |||||||||||||||||||||||||| |||||||||||||||| ||||||
seq2  CAGACATCAGTGGTCAGAGGAGATAA-GAGAGAGTAGGTAAAG-CTGAAA  234

seq1  CATTCTTGTCCATGAAGCACATGTGAGAAAGATTAAGTCTGGCGGTGATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTGTCCATGAAGCACATGTGAGAAAGATTAAGTCTGGCGGTGATC  284

seq1  AGGAAACCTGTGGGAAGATGATGTCAGCCTAGGCTGGAGAAGCAGTCTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACCTGTGGGAAGATGATGTCAGCCTAGGCTGGAGAAGCAGTCTCT  334

seq1  GGTCTCTTAATAAGAGTTCATGGAGAAGTATGGCACCGGTACCTTTAGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTTAATAAGAGTTCATGGAGAAGTATGGCACCGGTACCTTTAGAA  384

seq1  GGTACCTTTATAGATTAAATGTGCTTCAAAGCACGGGTGAAAAGAAAAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTTTATAGATTAAATGTGCTTCAAAGCACGGGTGAAAAGAAAAAG  434

seq1  ACCTCTTGCAATGGAATGGGTAAAATCAGTGAAGCGCTAGGCTGGAGGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTGCAATGGAATGGGTAAAATCAGTGAAGCGCTAGGCTGGAGGGT  484

seq1  GTTTGGGTTTCAAACTAGGATGACTTGTCAGTCCTGACCTAGATCACATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGTTTCAAACTAGGATGACTTGTCAGTCCTGACCTAGATCACATG  534

seq1  TATAGCAAAGAGGAAGGAGTTTGGAAGGAATGGTTAAAGTTCTTGAATCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAAAGAGGAAGGAGTTTGGAAGGAATGGTTAAAGTTCTTGAATCA  584

seq1  GTTTTCTTAGTTAATCAACAGAGGTAAAGGGGGTGGGTGCTTCCTGGAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTAGTTAATCAACAGAGGTAAAGGGGGTGGGTGCTTCCTGGAGT  634

seq1  TTGTTTGCTGCCTTAATATACCAGTTACTGTGGGTGACTTGTTCTTTTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCTGCCTTAATATACCAGTTACTGTGGGTGACTTGTTCTTTTAG  684

seq1  CACCCAGTAGACTTGGTGAGCACAGTGGGCCTCACATAGCACTCAGGGAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGTAGACTTGGTGAGCACAGTGGGCCTCACATAGCACTCAGGGAC  734

seq1  TCCAGACTCAGTCTTGCAGGTCCAAGAAGAGGACTTGATTGAATTGGACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACTCAGTCTTGCAGGTCCAAGAAGAGGACTTGATTGAATTGGACC  784

seq1  CCAGGCCTCTGACCCACTATGAGATGATTGGTGGCTCTTGTTTTAATTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCTCTGACCCACTATGAGATGATTGGTGGCTCTTGTTTTAATTTG  834

seq1  CTAAGTTTGTGGTGATTTTATGTGCACCCCCGGAAAGCCAACACAGGGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTTGTGGTGATTTTATGTGCACCCCCGGAAAGCCAACACAGGGAA  884

seq1  GTCTGGCTAGAATGGTAGACATCAAAAACAGCCACAAAGAAGTCACTCAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGCTAGAATGGTAGACATCAAAAACAGCCACAAAGAAGTCACTCAG  934

seq1  ACATTACACTTGAAAATTAAAACAATATCCTTGTCAGCCAAGCGATAAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACACTTGAAAATTAAAACAATATCCTTGTCAGCCAAGCGATAAGT  984

seq1  AGACAAGAATAATTCAGATGTGAGCAAGTTACAATAGCGATGACAAAAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGAATAATTCAGATGTGAGCAAGTTACAATAGCGATGACAAAAGA  1034

seq1  GCAAAGCAATGTCTCCATCATTAGAAATTATAAAATATGGAAATGGCCCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCAATGTCTCCATCATTAGAAATTATAAAATATGGAAATGGCCCT  1084

seq1  TATATAACGTCTGGATCAAAGAGGGAATTC  1128
      ||||||||||||||||||||||||||||||
seq2  TATATAACGTCTGGATCAAAGAGGGAATTC  1114

seq1: chr12_26292922_26293341
seq2: B6Ng01-027B11.g_69_488

seq1  GAATTCACAGTTGAGGTGACGGGGTGGGTGGGGAGATCTTGAACTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTTGAGGTGACGGGGTGGGTGGGGAGATCTTGAACTGTGTG  50

seq1  TTTTTGTCAAGGTTACATTTCTGCTACTGATCCCAGCCCAGCTCTCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCAAGGTTACATTTCTGCTACTGATCCCAGCCCAGCTCTCCTCT  100

seq1  ACCTACGCTAACTTCTGACTTCCTTTTCCTTTCTTCTTTCTTTTTCCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACGCTAACTTCTGACTTCCTTTTCCTTTCTTCTTTCTTTTTCCTTC  150

seq1  CCTTCCTTTTATGTTGTCATGTTTCCATGTGTGCATTTGTAAAGTAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTTTATGTTGTCATGTTTCCATGTGTGCATTTGTAAAGTAGTGG  200

seq1  GTTTCATGATGGCGTTTTCATACATGTGTGCCTTTATGCTTAGTTTTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATGATGGCGTTTTCATACATGTGTGCCTTTATGCTTAGTTTTCAC  250

seq1  TGATTCCCCTTCCCTAACGCCTTTCCACGTGTCCCTGCCACTCTGTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCCCTTCCCTAACGCCTTTCCACGTGTCCCTGCCACTCTGTATCT  300

seq1  GAGTCCCTTCCTTCTCCCAATTAAATTCTTTTTTTTCTGATCACTTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCTTCCTTCTCCCAATTAAATTCTTTTTTTTCTGATCACTTCTTT  350

seq1  CTTGTTAGCATCTCCCTTAAAGGTCTTTCCCACTCTCTCTCTCTCTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTAGCATCTCCCTTAAAGGTCTTTCCCACTCTCTCTCTCTCTCTCT  400

seq1  CTCTCTCTCTCTCTCTCTCT  420
      ||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCT  420