BAC Information

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BAC

Clone NameB6Ng01-029K03
Chromosome12 (Build37)
Map Location 114,072,661 - 114,244,110
singlet/doubletdoublet
Overlap geneGpr132, Jag2, Nudt14, Brf1, Btbd6
Upstream genePpp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4
Downstream genePacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029K03.bB6Ng01-029K03.g
ACCDH859782DH859783
length1,0721,031
definitionDH859782|Mus musculus domesticus DNA, BAC clone: B6Ng01-029K03, 5' end.DH859783|Mus musculus domesticus DNA, BAC clone: B6Ng01-029K03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,072,661 - 114,073,678)(114,243,066 - 114,244,110)
sequence
gaattccatttaaagtagattgtccaggctggcaagatggctcagtgggt
aagagcactgactgctccaccaaaggtcctgagttcaaatcccagcaacc
acatggtggctcatcggatgcccttttcttgtgtgtctgaagacagtgac
agtgtacttacatataataaagaagtaaatctttttaaaaatatagctgg
aatagacttacacctttgagtcggagcaaaagctataactttgggttaga
aaagcatggacattttttattctgtccagagagccagatatatagattgg
acagagatgtttttagcccactgaaaagcacctttaagtctatacttaga
agaaaaccaaaggaaatttaaaatcttgagcttgtgactcaatagtaagt
agccagtgctctatcagcttctcagaactccattggtccgtattaaacct
gaacctttggaatcttagtatgagcatagcacgtggggggtggcaagtct
aaaacattttctattttccaaatacctcaaatcactttttagacctttag
aagttgtgtagactttaaaccagtctcttttccatctcatggtttactgg
agatgaatctttactactgtgactagtcattgcaaagcatgtttctttgg
tgacaaggcacacctgaaacctgtttatcctttaatttgaggcttgttaa
ctaggcaaacctgtctgcctgactttaacaaaagacctagccgctttaga
tgaactaatgtggctgcagccttgtgggaaggagctggtagcctgctgcc
accaagctgacagacctacaggtagtctagtcatccagccgtcagagagc
cagaggataaacagcaggaagtatgatccaaatggtgtatgcatcaagca
gaactagagagaccaggtcatgaaaacatacacctagatggccagcccag
gttcctgtggtctccatggtgttggggtcagagctaccagacaggcagca
cagtctttggccactaggcacagaaaatgaaagggttttctgagcaggag
atcaattgggggggggggggga
gccataagaaaatataaactgtgctaggagagcattacctctgtgctccg
aatgcaatcggttctgttgctttcctttctcttctcgtctttcatggctt
ttaactccagtgaagaatattgagatgggaacaaaggatgctctgagtca
agccagctgtggagctctggtgctgcacacctttaatcccagcactccag
aggcagaggcattcagatcgctatgagttcagggctaacctgatctatag
agcaagttccaagccagtcagagttacatcacacgaatctgtctcagaaa
aataaaagcatgtcttgtggcagataaatcaggataggctgtggctgagc
cgctgacaggggtgagctaggtgccctggaaaaataagccaagggcagcc
ccagcacttcccccgtaccagccaagcaccatcagtatggaaacatacac
tcacttagtaggtgatatccttacaaccctgggaaaccattcacatctgt
cagacaatggaaaatacaagtgacaaaatatttacaaagaatgaaatagg
cttttgttttctttgtaaatcacgatgcccacctcaattgcccatgtgat
gaaggtgaatgcagagcaaaggccagcctgcagctctccccatgatctca
attcacccagaggcgggcgccacctcctgggttactctgctcaggagtgt
gggctccctcatccttcaccttaggatggcagagctgccctcttctggtt
ggtagctaccttgggcatttgcacatagtctgtggcattgcaggtttgtg
tggtatttcaaagggagagcttatggaggggtatgtctgataactgggaa
atgacagatcagccatgacatatttacccactggacatgcaaggagctct
ccgtgttgctctccagaacagtcacggtaggcgatggtgtgaaagccaag
gattaaagcttgtcgagcaagcatcatctcttccttatttaaggcgttat
attcttgaatattgagaacaggtttctctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_114072661_114073678
seq2: B6Ng01-029K03.b_103_1114

seq1  ACTGCTCCACCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCCACCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGC  50

seq1  TCATCGGATGCCCTTTTCTTGTGTGTCTGAAGACAGTGACAGTGTACTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGGATGCCCTTTTCTTGTGTGTCTGAAGACAGTGACAGTGTACTTA  100

seq1  CATATAATAAAGAAGTAAATCTTTTTAAAAATATAGCTGGAATAGACTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATAAAGAAGTAAATCTTTTTAAAAATATAGCTGGAATAGACTTA  150

seq1  CACCTTTGAGTCGGAGCAAAAGCTATAACTTTGGGTTAGAAAAGCATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTGAGTCGGAGCAAAAGCTATAACTTTGGGTTAGAAAAGCATGGA  200

seq1  CATTTTTTATTCTGTCCAGAGAGCCAGATATATAGATTGGACAGAGATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTATTCTGTCCAGAGAGCCAGATATATAGATTGGACAGAGATGT  250

seq1  TTTTAGCCCACTGAAAAGCACCTTTAAGTCTATACTTAGAAGAAAACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCCCACTGAAAAGCACCTTTAAGTCTATACTTAGAAGAAAACCAA  300

seq1  AGGAAATTTAAAATCTTGAGCTTGTGACTCAATAGTAAGTAGCCAGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATTTAAAATCTTGAGCTTGTGACTCAATAGTAAGTAGCCAGTGCT  350

seq1  CTATCAGCTTCTCAGAACTCCATTGGTCCGTATTAAACCTGAACCTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGCTTCTCAGAACTCCATTGGTCCGTATTAAACCTGAACCTTTGG  400

seq1  AATCTTAGTATGAGCATAGCACGTGGGGGGTGGCAAGTCTAAAACATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAGTATGAGCATAGCACGTGGGGGGTGGCAAGTCTAAAACATTTT  450

seq1  CTATTTTCCAAATACCTCAAATCACTTTTTAGACCTTTAGAAGTTGTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCCAAATACCTCAAATCACTTTTTAGACCTTTAGAAGTTGTGTA  500

seq1  GACTTTAAACCAGTCTCTTTTCCATCTCATGGTTTACTGGAGATGAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAAACCAGTCTCTTTTCCATCTCATGGTTTACTGGAGATGAATCT  550

seq1  TTACTACTGTGACTAGTCATTGCAAAGCATGTTTCTTTGGTGACAAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTACTGTGACTAGTCATTGCAAAGCATGTTTCTTTGGTGACAAGGCA  600

seq1  CACCTGAAACCTGTTTATCCTTTAATTTGAGGCTTGTTAACTAGGCAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGAAACCTGTTTATCCTTTAATTTGAGGCTTGTTAACTAGGCAAAC  650

seq1  CTGTCTGCCTGACTTTAACAAAAGACCTAGCCGCTTTAGATGAACTAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCCTGACTTTAACAAAAGACCTAGCCGCTTTAGATGAACTAATG  700

seq1  TGGCTGCAGCCTTGTGGGAAGGAGCTGGTAGCCTGCTGCCACCAAGCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCAGCCTTGTGGGAAGGAGCTGGTAGCCTGCTGCCACCAAGCTGA  750

seq1  CAGACCTACAGGTAGTCTAGTCATCCAGCCGTCAGAGAGCCAGAAGGATA  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAGACCTACAGGTAGTCTAGTCATCCAGCCGTCAGAGAGCCAG-AGGATA  799

seq1  AACAGCAGGAAGTATGATCCAAATGGTGTATGCATCAAGCAGAACTAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAGGAAGTATGATCCAAATGGTGTATGCATCAAGCAGAACTAGAG  849

seq1  AGACCAGGTCATGAAAACATACACCTAGATGGCCAGCCCAGGTTCCTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGTCATGAAAACATACACCTAGATGGCCAGCCCAGGTTCCTGTG  899

seq1  GTCTCCATGGTGTTGGGGTCAGAGCTACCAAGACAGGGCAGCACCAGTCT  950
      ||||||||||||||||||||||||||||| ||||| ||||||| ||||||
seq2  GTCTCCATGGTGTTGGGGTCAGAGCTACC-AGACA-GGCAGCA-CAGTCT  946

seq1  TTGGCCACTAGGCACAGAAAATGAAAGGGTTTTCTGAGCAGGAGGATCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||| |||| |
seq2  TTGGCCACTAGGCACAGAAAATGAAAGGGTTTTCTGAGCAGGA-GATC-A  994

seq1  ATTGGGGGGTGGGGGGGA  1018
      ||||||||| ||||||||
seq2  ATTGGGGGGGGGGGGGGA  1012

seq1: chr12_114243066_114244110
seq2: B6Ng01-029K03.g_79_1109 (reverse)

seq1  ATAGAGAAACCTG-TCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACA  49
      ||||||||||||| ||||           || |   || || | ||  | 
seq2  ATAGAGAAACCTGTTCTC-----------AATATTCAAGAATATAACGCC  39

seq1  TAAAATAAGGTAAGAGGATGATGCCTGCTCGAC-AGCTTTAATCCTTGGC  98
      | |||||||| |||| |||||||| |||||||| ||||||||||||||||
seq2  TTAAATAAGG-AAGA-GATGATGCTTGCTCGACAAGCTTTAATCCTTGGC  87

seq1  TTTTCACACCATCGCCTACCGTGACTGTTCCTGGAGAGCAACACGGAGAG  148
       |||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  -TTTCACACCATCGCCTACCGTGACTGTT-CTGGAGAGCAACACGGAGAG  135

seq1  CTCCCTTGCATGTCCAGTGGGTAAATATGTCATGGCTGATCTGTCATTTC  198
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CT-CCTTGCATGTCCAGTGGGTAAATATGTCATGGCTGATCTGTCATTTC  184

seq1  CCAGTTATCAGACATACCCCTCCATAAGCTCTCCCTTTGAAATACCACAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTATCAGACATACCCCTCCATAAGCTCTCCCTTTGAAATACCACAC  234

seq1  AAACCTGCAATGCCACAGACTATGTGCAAATGCCCAAGGTAGCTACCAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGCAATGCCACAGACTATGTGCAAATGCCCAAGGTAGCTACCAAC  284

seq1  CAGAAGAGGGCAGCTCTGCCATCCTAAGGTGAAGGATGAGGGAGCCCACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGGGCAGCTCTGCCATCCTAAGGTGAAGGATGAGGGAGCCCACA  334

seq1  CTCCTGAGCAGAGTAACCCAGGAGGTGGCGCCCGCCTCTGGGTGAATTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGCAGAGTAACCCAGGAGGTGGCGCCCGCCTCTGGGTGAATTGA  384

seq1  GATCATGGGGAGAGCTGCAGGCTGGCCTTTGCTCTGCATTCACCTTCATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGGGGAGAGCTGCAGGCTGGCCTTTGCTCTGCATTCACCTTCATC  434

seq1  ACATGGGCAATTGAGGTGGGCATCGTGATTTACAAAGAAAACAAAAGCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGCAATTGAGGTGGGCATCGTGATTTACAAAGAAAACAAAAGCCT  484

seq1  ATTTCATTCTTTGTAAATATTTTGTCACTTGTATTTTCCATTGTCTGACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTCTTTGTAAATATTTTGTCACTTGTATTTTCCATTGTCTGACA  534

seq1  GATGTGAATGGTTTCCCAGGGTTGTAAGGATATCACCTACTAAGTGAGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGAATGGTTTCCCAGGGTTGTAAGGATATCACCTACTAAGTGAGTG  584

seq1  TATGTTTCCATACTGATGGTGCTTGGCTGGTACGGGGGAAGTGCTGGGGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTCCATACTGATGGTGCTTGGCTGGTACGGGGGAAGTGCTGGGGC  634

seq1  TGCCCTTGGCTTATTTTTCCAGGGCACCTAGCTCACCCCTGTCAGCGGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTGGCTTATTTTTCCAGGGCACCTAGCTCACCCCTGTCAGCGGCT  684

seq1  CAGCCACAGCCTATCCTGATTTATCTGCCACAAGACATGCTTTTATTTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACAGCCTATCCTGATTTATCTGCCACAAGACATGCTTTTATTTTT  734

seq1  CTGAGACAGATTCGTGTGATGTAACTCTGACTGGCTTGGAACTTGCTCTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACAGATTCGTGTGATGTAACTCTGACTGGCTTGGAACTTGCTCTA  784

seq1  TAGATCAGGTTAGCCCTGAACTCATAGCGATCTGAATGCCTCTGCCTCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCAGGTTAGCCCTGAACTCATAGCGATCTGAATGCCTCTGCCTCTG  834

seq1  GAGTGCTGGGATTAAAGGTGTGCAGCACCAGAGCTCCACAGCTGGCTTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGGGATTAAAGGTGTGCAGCACCAGAGCTCCACAGCTGGCTTGA  884

seq1  CTCAGAGCATCCTTTGTTCCCATCTCAATATTCTTCACTGGAGTTAAAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGCATCCTTTGTTCCCATCTCAATATTCTTCACTGGAGTTAAAAG  934

seq1  CCATGAAAGACGAGAAGAGAAAGGAAAGCAACAGAACCGATTGCATTCGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAAGACGAGAAGAGAAAGGAAAGCAACAGAACCGATTGCATTCGG  984

seq1  AGCACAGAGGTAATGCTCTCCTAGCACAGTTTATATTTTCTTATGGC  1045
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGAGGTAATGCTCTCCTAGCACAGTTTATATTTTCTTATGGC  1031