BAC Information

Click to search

BAC

Clone NameB6Ng01-031F21
Chromosome12 (Build37)
Map Location 32,631,616 - 32,631,843
singlet/doubletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031F21.bB6Ng01-031F21.g
ACCDH861003DH861004
length603177
definitionDH861003|Mus musculus domesticus DNA, BAC clone: B6Ng01-031F21, 5' end.DH861004|Mus musculus domesticus DNA, BAC clone: B6Ng01-031F21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacatcatgcaacacaatccaacatataccctagcccgtcttat
cttccttctacccttgcaaactcaaccccaataaaataacataagataga
attaacgaagaccaaagtgtggtcactttgccccttcttataattgggaa
caaaacacccatggaaggagttacagagacaaagtgtggagctgagagta
aaggatggaccatctagagactgccatactcgtggatctatcccataatc
agctttcaaacgctgacaccattgtatacaccagcaagattttgctgaaa
gtaccctgatatagctgtctcttgtgaggctatgccggggccttgcaaac
acagaagtggatgctcacagtcagctattggatggaacacagggccctca
atggaggagctagaaaaagtacccaaggagctaaagggatctgcaaccct
ataggtgaaacaacaatatgaactaaccagtaccccccagagctcgtgtc
tctagctgcatatgtatcagaggatggcctagtcggccatcattgggaag
agaggtcccttggtcttgcaaactttatatgcctcagggccaagaagtgg
gag
acatactatgcagcacatatctacctgtatacttctctatatatccatat
atatccatatatattcatatatatgaatatatataaggcacaagaaagaa
caagaaagaaaagtaacaataacaattggaaaagagatcatgagtttaag
aggattgggtaggggtggttgaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631843
seq2: B6Ng01-031F21.b_389_647 (reverse)

seq1  CTCCCACTTCTTGGCCCTG---------------GCAAGACCCATGGGCC  35
      |||||||||||||||||||               |||||||| | || ||
seq2  CTCCCACTTCTTGGCCCTGAGGCATATAAAGTTTGCAAGACCAAGGGACC  50

seq1  TCTCTTTCCACTGA----------------CTTCTGATACATACGCAGCT  69
      |||||| ||| |||                | ||||||||||| ||||||
seq2  TCTCTTCCCAATGATGGCCGACTAGGCCATCCTCTGATACATATGCAGCT  100

seq1  AGAGACACGAGCTC-CGGGGGTACTGGTCAGTTCATAATGTTGTTCCACC  118
      ||||||||||||||  |||||||||||| |||||||| ||||||| ||||
seq2  AGAGACACGAGCTCTGGGGGGTACTGGTTAGTTCATATTGTTGTTTCACC  150

seq1  TATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTACTTTCTCTAACTCCTC  168
      |||||||||||||| ||||||||||||||||||||||| |||| ||||||
seq2  TATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTTTCTAGCTCCTC  200

seq1  CATTGGGGACCCTGTGATCCTATCCAATAGCTGACTGTGAGCATCCACTT  218
      ||||| || ||||||| ||| |||||||||||||||||||||||||||||
seq2  CATTGAGGGCCCTGTGTTCC-ATCCAATAGCTGACTGTGAGCATCCACTT  249

seq1  CTGTGTTTGC  228
      ||||||||||
seq2  CTGTGTTTGC  259