BAC Information

Click to search

BAC

Clone NameB6Ng01-034I03
Chromosome12 (Build37)
Map Location 19,279,447 - 19,393,276
singlet/doubletdoublet
Overlap geneEG546524, EG668584
Upstream geneEG632781, LOC668541, LOC673160, 5730507C01Rik, EG668553, LOC668558, LOC100042641, LOC668568, LOC668570, EG668413, LOC671401
Downstream geneEG544848, EG627871, LOC100042698, LOC629055, EG668588, LOC100042706, EG668594, EG668600, LOC100042727, LOC673301, EG668605, LOC668614, LOC100042751
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034I03.bB6Ng01-034I03.g
ACCDH863240DH863241
length9591,189
definitionDH863240|Mus musculus domesticus DNA, BAC clone: B6Ng01-034I03, 5' end.DH863241|Mus musculus domesticus DNA, BAC clone: B6Ng01-034I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,279,447 - 19,280,415)(19,392,077 - 19,393,276)
sequence
gaattccactgcactgagaaaacagtctgtagggactaggtcgcctctgt
gatttgggcattgctcccacttacaggtagctcagaatcctacaagcaaa
tccctctgcctcaaacacataccaggagagcaaaggcgtgatccaagcat
ggatattagacactttcagctccactgggaacgcttttggtcttaaaagt
atttctcattatctttgtgtgagcatgcactaatgtggaaatcagagggc
actctgcaggacttggttctctcttctaccatgttggttctgagaactga
acttaggtcactaggctttgtggcaagtgttttccctactttttggccat
gtttattctccagtcattattttgtagacggatcctcagaggtttgctgg
actgtgggctctggaatgggctcactgctcacttacctccaagaatgacc
ccatgcctgcttacactcataaagaaattcccaacactctggctttgatc
ttctccactaactgccacataaagcttctgaattttgtttgatggaaaat
cctggaaatcctattaagcatacaagctacctgagctcctctcctgaaga
ctaattttaaaggtctaagtaaggcctcccagaatctagatttggaaaat
gaggtcagggcaagtgcacttattgggcaagcatgacttgagtttcaagc
ctagcacgcatgtggagagatattttaattcagcatcatggcagctctgg
cacgggatcacatccaaagagatgatcatggcttggacatggtcattgca
accatagccccagtaggtgagaaagatgctgaggactgtacctatggcaa
cccaggagtggagaggctagctggcatgagaaagacacagcattctgaac
agtgagaggggaggttttgctggactattctgggtgttggagtttagccc
attcttgga
gaattccccaccagaacctcaggaaagggccagtgagacagtgtgggtag
ctcgccccctacaggacagtgaaatcctccagggcactttagcgggacaa
gatgtagggacagttagttggggatgcaatgatagggaccatgttctgtc
tgtgctccttctcacagccttaagaagccagggataaagggtaaaggtac
gtgttttgcatagggagttgaccatgttacaagccgaatgggaattcaaa
cccatgaccttcgacttggaagaatactccaaccactattaagcatcctg
ttccctaagcttgtacaattagggacactcccagttacctgaagatagtt
ttagggtgctaggccaggcttcaccctgagaaaatcatagaatgcactga
tgtgctgtgggaagtgggggatacccaagagaaccagaggtagagatggt
tctcagagagtactccaacccacagctgactgatcacagacacaattggg
ccaataaatcatctgaattaggacattttcatctatatctcattcagaaa
ttctcagctgtattttaaaaacccagagtttctgaagacactagtcaaaa
atcacaccctctaactccccgaggcaagaggcatggttactgctgctgcc
aacaatacagcctagagaaaccttacaaaaaccttttgtgggtctgaaaa
gaagggaatgtgagggcattataagcccaacatgggaaataaaagtggtc
tcctgctgccataggacagtagagcagttcatcttcttaaggctcccatg
tacaaatatactgtatgaggtagcagctgaggtcagacattatgtatggc
ttctggtattttaccagcactgcctgtgaataagttcagacttcaaaaat
agctgtcggctggcgagatggcttagtggttaagagcacccgactgctct
tttgaggtccagagtcaatcccagctacaacatggtggtctcacatcatc
gtaatgagatctgactccccctccttggagtgtctggagatagctactgt
gtactatctatattataataataaatcctttataaaaaaatacctattag
ctgggtccaggggtagcttttatgccggcgcatggaatgatgtgcaatcc
aacttcggcaaccttctcctactttcccatgtgaacatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_19279447_19280415
seq2: B6Ng01-034I03.b_44_1002

seq1  GAATTCCACTGCACTGAGAAAACAGTCTGTAGGGACTAGGTCGCCTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGCACTGAGAAAACAGTCTGTAGGGACTAGGTCGCCTCTGT  50

seq1  GATTTGGGCATTGCTCCCACTTACAGGTAGCTCAGAATCCTACAAGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGGCATTGCTCCCACTTACAGGTAGCTCAGAATCCTACAAGCAAA  100

seq1  TCCCTCTGCCTCAAACACATACCAGGAGAGCAAAGGCGTGATCCAAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGCCTCAAACACATACCAGGAGAGCAAAGGCGTGATCCAAGCAT  150

seq1  GGATATTAGACACTTTCAGCTCCACTGGGAACGCTTTTGGTCTTAAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTAGACACTTTCAGCTCCACTGGGAACGCTTTTGGTCTTAAAAGT  200

seq1  ATTTCTCATTATCTTTGTGTGAGCATGCACTAATGTGGAAATCAGAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCATTATCTTTGTGTGAGCATGCACTAATGTGGAAATCAGAGGGC  250

seq1  ACTCTGCAGGACTTGGTTCTCTCTTCTACCATGTTGGTTCTGAGAACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCAGGACTTGGTTCTCTCTTCTACCATGTTGGTTCTGAGAACTGA  300

seq1  ACTTAGGTCACTAGGCTTTGTGGCAAGTGTTTTCCCTACTTTTTGGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGTCACTAGGCTTTGTGGCAAGTGTTTTCCCTACTTTTTGGCCAT  350

seq1  GTTTATTCTCCAGTCATTATTTTGTAGACGGATCCTCAGAGGTTTGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTCTCCAGTCATTATTTTGTAGACGGATCCTCAGAGGTTTGCTGG  400

seq1  ACTGTGGGCTCTGGAATGGGCTCACTGCTCACTTACCTCCAAGAATGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGGCTCTGGAATGGGCTCACTGCTCACTTACCTCCAAGAATGACC  450

seq1  CCATGCCTGCTTACACTCATAAAGAAATTCCCAACACTCTGGCTTTGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCTGCTTACACTCATAAAGAAATTCCCAACACTCTGGCTTTGATC  500

seq1  TTCTCCACTAACTGCCACATAAAGCTTCTGAATTTTGTTTGATGGAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACTAACTGCCACATAAAGCTTCTGAATTTTGTTTGATGGAAAAT  550

seq1  CCTGGAAATCCTATTAAGCATACAAGCTACCTGAGCTCCTCTCCTGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAATCCTATTAAGCATACAAGCTACCTGAGCTCCTCTCCTGAAGA  600

seq1  CTAATTTTAAAGGTCTAAGTAAGGCCTCCCAGAATCTAGATTTGGAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTAAAGGTCTAAGTAAGGCCTCCCAGAATCTAGATTTGGAAAAT  650

seq1  GAGGTCAGGGCAAGTGCACTTATTGGGCAAGCATGACTTGAGTTCAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  GAGGTCAGGGCAAGTGCACTTATTGGGCAAGCATGACTTGAGTTTCAAGC  700

seq1  CTAGCACGCATGTGGAGAGATATTTTAATTCAGCATCATGGCAGCTCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACGCATGTGGAGAGATATTTTAATTCAGCATCATGGCAGCTCTGG  750

seq1  CACGGGATCACATCCAAAGAGATGATCATGGCTTGGACCATGGTCATTGC  800
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CACGGGATCACATCCAAAGAGATGATCATGGCTTGGA-CATGGTCATTGC  799

seq1  AACCATAGCCCCAGTAGGTGAGAAAAGATGCTGAGGACTGTACCTATGGC  850
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AACCATAGCCCCAGTAGGTGAG-AAAGATGCTGAGGACTGTACCTATGGC  848

seq1  AACCCAGGAGTGGAGAGGCCTAGGCTGGCCATGAGAAAAGACACAGCATT  900
      |||||||||||||||||| ||| ||||| |||||| ||||||||||||||
seq2  AACCCAGGAGTGGAGAGG-CTA-GCTGG-CATGAG-AAAGACACAGCATT  894

seq1  CTGAACAGGTGGAGAGGGGAGGTTTTGCTGGACTATTCTGTGTGTTGGAG  950
      ||||||||   ||||||||||||||||||||||||||||| |||||||||
seq2  CTGAACAG--TGAGAGGGGAGGTTTTGCTGGACTATTCTGGGTGTTGGAG  942

seq1  TTTATAGCCCATTCTTGGA  969
      ||  |||||||||||||||
seq2  TT--TAGCCCATTCTTGGA  959

seq1: chr12_19392077_19393276
seq2: B6Ng01-034I03.g_68_1256 (reverse)

seq1  GATGTTCACAATGGTGGAAAGTGGCAGAGAGTTGCAGAGGTTTGGGATTG  50
      ||||||||| |||  ||||||| | |||  ||||| || |||  ||||||
seq2  GATGTTCAC-ATG--GGAAAGTAGGAGAAGGTTGCCGAAGTT--GGATTG  45

seq1  CAGTTTATTGCCTTGCGCCGGAATAAAAGCTACCCACTGG-CACAGCTAT  99
      ||  | ||| || |||||||| ||||||||||||| |||| | |||||| 
seq2  CACATCATT-CCATGCGCCGGCATAAAAGCTACCC-CTGGACCCAGCTA-  92

seq1  ATAGCTATTTTTTTTTAAA-GATTTATTTATTTATTATATGTAAGTACAC  148
      |||| ||||||||| |||| ||||||||  | || |||| |  |||||||
seq2  ATAGGTATTTTTTTATAAAGGATTTATTATTATAATATA-GATAGTACAC  141

seq1  TGTAGCTATCTTCAGACACTCC-AGAAGAGGGAGTCAGATCTCATTACGG  197
       |||||||||| |||||||||| || || ||||||||||||||||||| |
seq2  AGTAGCTATCTCCAGACACTCCAAGGAGGGGGAGTCAGATCTCATTAC-G  190

seq1  ATGGTTGTGAG-CCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTC  246
      || | |||||| ||||||||| || |||||||||   |||||||||| ||
seq2  AT-GATGTGAGACCACCATGTTGTAGCTGGGATT--GACTCTGGACC-TC  236

seq1  AGAAGAGCAGTCGGGTGCTCTTAACCACTAAGCCATCTCGCCAGCCCGAC  296
      | |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAAAGAGCAGTCGGGTGCTCTTAACCACTAAGCCATCTCGCCAG-CCGAC  285

seq1  AGCTATTTTTGAAGTCTGAACTTATTCACAGGCAGTGCTGGTAAAATACC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTTTGAAGTCTGAACTTATTCACAGGCAGTGCTGGTAAAATACC  335

seq1  AGAAGCCATACATAATGTCTGACCTCAGCTGCTACCTCATACAGTATATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCATACATAATGTCTGACCTCAGCTGCTACCTCATACAGTATATT  385

seq1  TGTACATGGGAGCCTTAAGAAGATGAACTGCTCTACTGTCCTATGGCAGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGGGAGCCTTAAGAAGATGAACTGCTCTACTGTCCTATGGCAGC  435

seq1  AGGAGACCACTTTTATTTCCCATGTTGGGCTTATAATGCCCTCACATTCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACCACTTTTATTTCCCATGTTGGGCTTATAATGCCCTCACATTCC  485

seq1  CTTCTTTTCAGACCCACAAAAGGTTTTTGTAAGGTTTCTCTAGGCTGTAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTCAGACCCACAAAAGGTTTTTGTAAGGTTTCTCTAGGCTGTAT  535

seq1  TGTTGGCAGCAGCAGTAACCATGCCTCTTGCCTCGGGGAGTTAGAGGGTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCAGCAGCAGTAACCATGCCTCTTGCCTCGGGGAGTTAGAGGGTG  585

seq1  TGATTTTTGACTAGTGTCTTCAGAAACTCTGGGTTTTTAAAATACAGCTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTGACTAGTGTCTTCAGAAACTCTGGGTTTTTAAAATACAGCTG  635

seq1  AGAATTTCTGAATGAGATATAGATGAAAATGTCCTAATTCAGATGATTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTCTGAATGAGATATAGATGAAAATGTCCTAATTCAGATGATTTA  685

seq1  TTGGCCCAATTGTGTCTGTGATCAGTCAGCTGTGGGTTGGAGTACTCTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCCAATTGTGTCTGTGATCAGTCAGCTGTGGGTTGGAGTACTCTCT  735

seq1  GAGAACCATCTCTACCTCTGGTTCTCTTGGGTATCCCCCACTTCCCACAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCATCTCTACCTCTGGTTCTCTTGGGTATCCCCCACTTCCCACAG  785

seq1  CACATCAGTGCATTCTATGATTTTCTCAGGGTGAAGCCTGGCCTAGCACC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAGTGCATTCTATGATTTTCTCAGGGTGAAGCCTGGCCTAGCACC  835

seq1  CTAAAACTATCTTCAGGTAACTGGGAGTGTCCCTAATTGTACAAGCTTAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACTATCTTCAGGTAACTGGGAGTGTCCCTAATTGTACAAGCTTAG  885

seq1  GGAACAGGATGCTTAATAGTGGTTGGAGTATTCTTCCAAGTCGAAGGTCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGGATGCTTAATAGTGGTTGGAGTATTCTTCCAAGTCGAAGGTCA  935

seq1  TGGGTTTGAATTCCCATTCGGCTTGTAACATGGTCAACTCCCTATGCAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTGAATTCCCATTCGGCTTGTAACATGGTCAACTCCCTATGCAAA  985

seq1  ACACGTACCTTTACCCTTTATCCCTGGCTTCTTAAGGCTGTGAGAAGGAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTACCTTTACCCTTTATCCCTGGCTTCTTAAGGCTGTGAGAAGGAG  1035

seq1  CACAGACAGAACATGGTCCCTATCATTGCATCCCCAACTAACTGTCCCTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACAGAACATGGTCCCTATCATTGCATCCCCAACTAACTGTCCCTA  1085

seq1  CATCTTGTCCCGCTAAAGTGCCCTGGAGGATTTCACTGTCCTGTAGGGGG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGTCCCGCTAAAGTGCCCTGGAGGATTTCACTGTCCTGTAGGGGG  1135

seq1  CGAGCTACCCACACTGTCTCACTGGCCCTTTCCTGAGGTTCTGGTGGGGA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTACCCACACTGTCTCACTGGCCCTTTCCTGAGGTTCTGGTGGGGA  1185

seq1  ATTC  1200
      ||||
seq2  ATTC  1189