BAC Information

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BAC

Clone NameB6Ng01-037O06
Chromosome12 (Build37)
Map Location 62,502,701 - 62,503,541
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665665, Ppia-ps12_475.1, LOC100040300, LOC665677
Downstream geneNanog-ps2, Lrfn5, LOC665699, LOC665707, LOC100040403, LOC665713, LOC622746
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037O06.bB6Ng01-037O06.g
ACCDH865621DH865622
length8411,207
definitionDH865621|Mus musculus domesticus DNA, BAC clone: B6Ng01-037O06, 5' end.DH865622|Mus musculus domesticus DNA, BAC clone: B6Ng01-037O06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaacaagagcaaatagattacaattttaaatcatcatagaacct
tatagagactgtaagcttaacctaaccattagcctaagctcgaaaatata
tatacaataaaacaaattgaataaagtttgctacttgctacaaaatataa
gaagcttataaatttatgggaaaatggaataatgttatcaaaaacatgaa
gcatctcacagaaaaagacaactacttagagaacctataagatgtttttt
ttttaattttattttataccagtagaagtcaatgtaatgctaaatgtata
taattttataaatcagtatttatttattcaagtccttcagcattgtaaat
ttggttaatgttgtcctcaaacaattcaaatgaagtttaacatagatacc
cactatgactcaaataatttcacttttaagcataaactggtgaaaagctt
gtatatgtgaatgttttgtatcccaaataatctaccctaagaaatacgta
taaaagttggtttagcatctatgttaatattataaaaaaaaaacccaaaa
cacagaccatatgatgagactaagcaactttttctatcgctattatgaaa
atatattgtacctacattttaattgtataacaaaatactgtcaaaagcaa
ggggaaagaattaatgttaactcacagtttgaggttacaacacatcaaaa
tcgtatattgtgttaagttctaagacagaggcagaaacttgaagcagcag
gtcatattatataaacaggaatattcacactcatctagcttcctttcatt
tttttcctcttctcttctcttctcttctcttatcttctctt
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cagtcccgagttttttctcgtcccggaattcggcaccaattgttattaga
cgcgttctcacgaccggccaggaaagacgcaacagaccagaatcttctgc
ggcaaagctttattgcttacatcttcaggagccagagtgcaagaagcaag
agagagagaaaacgaaaccccgtccctattaaggagaattctccttcgcc
taggacgtgtcactccctgattggctgcagcccatcggccgagttgacgt
cacggggaaggcagagcacatggagtagagaaccaccctcggcatatgcg
cagattatttgtttaccacttagaacacagctgtcagcgccatcttgtaa
cggcgaatgtgggcgcggctcccaacacccttcttattcctcctccctat
ctcctatgagagagtgagtaacacctgggtgtcccactactctggcacat
caagtctctatagggttaagcaaatcctctccctcaaaggccaggcaaga
cagcccagttaggaggattgaatctacagacaatcaacagctttaggaac
agtcattgttccagttgttgggggactcacataaatattgagctgcacat
caactacatatgtgctggaggcctaggttcagccattgtaggctctatgg
ttggtgattcggttttttgggagtatccaactgttcagatgatttgattt
tctttttcttcctgtgaagttcctagcccatcagaagccctcaatccttc
ccccagcacttttactctccctttccaatttgtatctacttgatcttcat
agtgtcttgttactctagataaaacttcaagtatatattgagtagatatt
gaaggagtggacaaccttttcttagtcctaatttaggaactgctttgagt
tccttcattatttgatggtggctatggctgctgagtgtggattatcattt
aaggtctgcctgttcctgatcctggcagaacaatgctaatcaatcttgga
ttaccttggtagttgtgggacctattcaagaattatatttccgttggatg
tccataccgggaggaccggtcttaagatagagcactcgtgtaatgcctgc
gcgagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_62502701_62503541
seq2: B6Ng01-037O06.b_48_888 (reverse)

seq1  AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGGAAAAAAATGAAAGG  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGATAAGAGAAGAGAAGAGAAGAGAAGAGGAAAAAAATGAAAGG  50

seq1  AAGCTAGATGAGTGTGAATATTCCTGTTTATATAATATGACCTGCTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGATGAGTGTGAATATTCCTGTTTATATAATATGACCTGCTGCTT  100

seq1  CAAGTTTCTGCCTCTGTCTTAGAACTTAACACAATATACGATTTTGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTCTGCCTCTGTCTTAGAACTTAACACAATATACGATTTTGATGT  150

seq1  GTTGTAACCTCAAACTGTGAGTTAACATTAATTCTTTCCCCTTGCTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAACCTCAAACTGTGAGTTAACATTAATTCTTTCCCCTTGCTTTTG  200

seq1  ACAGTATTTTGTTATACAATTAAAATGTAGGTACAATATATTTTCATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATTTTGTTATACAATTAAAATGTAGGTACAATATATTTTCATAAT  250

seq1  AGCGATAGAAAAAGTTGCTTAGTCTCATCATATGGTCTGTGTTTTGGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGATAGAAAAAGTTGCTTAGTCTCATCATATGGTCTGTGTTTTGGGTT  300

seq1  TTTTTTTTATAATATTAACATAGATGCTAAACCAACTTTTATACGTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTATAATATTAACATAGATGCTAAACCAACTTTTATACGTATTT  350

seq1  CTTAGGGTAGATTATTTGGGATACAAAACATTCACATATACAAGCTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGTAGATTATTTGGGATACAAAACATTCACATATACAAGCTTTTC  400

seq1  ACCAGTTTATGCTTAAAAGTGAAATTATTTGAGTCATAGTGGGTATCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTTATGCTTAAAAGTGAAATTATTTGAGTCATAGTGGGTATCTAT  450

seq1  GTTAAACTTCATTTGAATTGTTTGAGGACAACATTAACCAAATTTACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACTTCATTTGAATTGTTTGAGGACAACATTAACCAAATTTACAAT  500

seq1  GCTGAAGGACTTGAATAAATAAATACTGATTTATAAAATTATATACATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGGACTTGAATAAATAAATACTGATTTATAAAATTATATACATTT  550

seq1  AGCATTACATTGACTTCTACTGGTATAAAATAAAATTAAAAAAAAAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTACATTGACTTCTACTGGTATAAAATAAAATTAAAAAAAAAACAT  600

seq1  CTTATAGGTTCTCTAAGTAGTTGTCTTTTTCTGTGAGATGCTTCATGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGGTTCTCTAAGTAGTTGTCTTTTTCTGTGAGATGCTTCATGTTT  650

seq1  TTGATAACATTATTCCATTTTCCCATAAATTTATAAGCTTCTTATATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAACATTATTCCATTTTCCCATAAATTTATAAGCTTCTTATATTTT  700

seq1  GTAGCAAGTAGCAAACTTTATTCAATTTGTTTTATTGTATATATATTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAGTAGCAAACTTTATTCAATTTGTTTTATTGTATATATATTTTC  750

seq1  GAGCTTAGGCTAATGGTTAGGTTAAGCTTACAGTCTCTATAAGGTTCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTAGGCTAATGGTTAGGTTAAGCTTACAGTCTCTATAAGGTTCTAT  800

seq1  GATGATTTAAAATTGTAATCTATTTGCTCTTGTTTGAATTC  841
      |||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTTAAAATTGTAATCTATTTGCTCTTGTTTGAATTC  841