BAC Information

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BAC

Clone NameB6Ng01-038O05
Chromosome12 (Build37)
Map Location 47,617,657 - 47,739,151
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC664952
Downstream geneNova1, LOC100039190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038O05.bB6Ng01-038O05.g
ACCDH866314DH866315
length1,094926
definitionDH866314|Mus musculus domesticus DNA, BAC clone: B6Ng01-038O05, 5' end.DH866315|Mus musculus domesticus DNA, BAC clone: B6Ng01-038O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,738,048 - 47,739,151)(47,617,657 - 47,618,582)
sequence
gaattcatcagatgcctgagactaaagacagaatcctaccccacccctga
aagatacagggtggtcacaaagaatctgccctgtaagctgaggctactgg
caaagccagatgaagaatgttccaactggaaggcacaaggttgcatgatt
ggacacacacaattggacagttcaaagctattgacactggccagaaagca
caacacgcaatcatgttcagtgaaaacttgggctgaaataggattagatg
gtagtctggaggttacagaaggtgtgcttattctaaatgcaataggaaga
ctctggaaactttgaaatcagactatatggtgatcagacttgtgttttaa
aatcactgtcactgctgtctgggatgaatgcacccagaggttagggttct
tggggagaccagttagaaaccagctaagagatggcagtttcctgactaat
gtattttattccctgaaatcgagagagagagagagagaaagagtgagaga
gagagagagagagagagagagagagagagagagagagagattcattttaa
atgtttttctgtccttttgggaagcagtttgggacactgtatgtgactca
tctttgcaccaatcttctgagtcacaaatgcgggcagactttctgataat
tttgttagtggactatataatgcaattttttgaaactgagtttgaaaaac
gacagggagagttttgtagactaaatgaagctttaaaaatcaaagcatta
tgctgaacgcagtaaacaaataggcttttatctgtagtcttaaaatagga
aattcttttgtgccacaaaagaacttatcagatggtggagcttactggtg
ctggaggaaccaggaatctttgttttggtttgttttataaaaagtccccc
agattgcttgtcagtctgtattaattaccagatagctgctcagtcttatt
ctactttgtcccacagaagctattgtagatttcatcttaaaaaaaatatg
aaatagaaacatcatagcatctggcatcacatctgtcactgcatgggttt
cagggttaatttggctcatttgtaagttactggccaggcccatc
gaattccctcaatttctgtttctttattgtttcttcttccattttcaaag
tcttaaaattttttatttgtttctctcacctttttgtgtttgcttggcta
tttgtcggtcatagatttattcatttccttcatttctttctttctctttt
cctcaagtttttaaaagagatttagttatttcctctttaaggatctctgt
aatatttataaaacagattttaagatcattttcttccactttagctgttt
tggaatatttagtttttgttgtaggatagctggggtctggtgatgacata
atgacttgacaatgttgatagcaggccttccttactctgtgttacagcaa
acccaattctcagggtcgtccctagagctgcaacagaacaccagtggcag
cattgacttcactctatccatgtctcctatgggtggtaaaagtaactgtc
attcaccagatgcaattcaccatctcataggcttactgctgaataagctc
accctttccagttctttctgaactctgactgactggttcaactcagttgt
gctgggtcaaaactctgctccaagcttactgatccgccctggcttctctc
actgaattgctctacttgaaaagaaaattgcctctgaacttcaggaactg
aactcaactgcattcaactgaatggcaccaaactcaactgaactaaattc
cactgtaatgtttgaactcaactgaactagactcctgaactttcctacct
gcactgctccagtatccccaaaactgtgtcactagttgaatatgtagcag
aggatggcctagtcagccatcaatgggaggagaggcccttggtcttgcaa
agatcatatgccccagtacctgagaatgccaggaccaggagactggagtg
ggtggttggggagcagggttggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_47738048_47739151
seq2: B6Ng01-038O05.b_47_1140 (reverse)

seq1  GATGTGGCCTGGCCAAGTAACTTAACCAAATGAGCCAAATTAACCCTGGA  50
      |||| ||||||||| |||||||||  ||||||||||||||||||||| ||
seq2  GATG-GGCCTGGCC-AGTAACTTA--CAAATGAGCCAAATTAACCCT-GA  45

seq1  AACCCATGCAGTGACAGATGTGATGGCCAGATTGCTATGATGTTTCTATT  100
      |||||||||||||||||||||||| |||||| ||||||||||||||||||
seq2  AACCCATGCAGTGACAGATGTGAT-GCCAGA-TGCTATGATGTTTCTATT  93

seq1  TCATTATTTTTTTTTAAGATGAAATTCTACAATAGCTTCTGTGGGACAAA  150
      ||||   ||||||||||||||||| |||||||||||||||||||||||||
seq2  TCAT--ATTTTTTTTAAGATGAAA-TCTACAATAGCTTCTGTGGGACAAA  140

seq1  GTAGAATAAGACTGAGCAGCTATCTGGTAATTAATACAGACTGACAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATAAGACTGAGCAGCTATCTGGTAATTAATACAGACTGACAAGCA  190

seq1  ATCTGGGGGACTTTTTATAAAACAAACCAAAACAAAGATTCCTGGTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGGGACTTTTTATAAAACAAACCAAAACAAAGATTCCTGGTTCCT  240

seq1  CCAGCACCAGTAAGCTCCACCATCTGATAAGTTCTTTTGTGGCACAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACCAGTAAGCTCCACCATCTGATAAGTTCTTTTGTGGCACAAAAG  290

seq1  AATTTCCTATTTTAAGACTACAGATAAAAGCCTATTTGTTTACTGCGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTATTTTAAGACTACAGATAAAAGCCTATTTGTTTACTGCGTTC  340

seq1  AGCATAATGCTTTGATTTTTAAAGCTTCATTTAGTCTACAAAACTCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAATGCTTTGATTTTTAAAGCTTCATTTAGTCTACAAAACTCTCCC  390

seq1  TGTCGTTTTTCAAACTCAGTTTCAAAAAATTGCATTATATAGTCCACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGTTTTTCAAACTCAGTTTCAAAAAATTGCATTATATAGTCCACTAA  440

seq1  CAAAATTATCAGAAAGTCTGCCCGCATTTGTGACTCAGAAGATTGGTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTATCAGAAAGTCTGCCCGCATTTGTGACTCAGAAGATTGGTGCA  490

seq1  AAGATGAGTCACATACAGTGTCCCAAACTGCTTCCCAAAAGGACAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAGTCACATACAGTGTCCCAAACTGCTTCCCAAAAGGACAGAAAA  540

seq1  ACATTTAAAATGAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAAAATGAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  590

seq1  TCTCTCTCTCACTCTTTCTCTCTCTCTCTCTCTCGATTTCAGGGAATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCACTCTTTCTCTCTCTCTCTCTCTCGATTTCAGGGAATAAA  640

seq1  ATACATTAGTCAGGAAACTGCCATCTCTTAGCTGGTTTCTAACTGGTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTAGTCAGGAAACTGCCATCTCTTAGCTGGTTTCTAACTGGTCTC  690

seq1  CCCAAGAACCCTAACCTCTGGGTGCATTCATCCCAGACAGCAGTGACAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAACCCTAACCTCTGGGTGCATTCATCCCAGACAGCAGTGACAGT  740

seq1  GATTTTAAAACACAAGTCTGATCACCATATAGTCTGATTTCAAAGTTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAAAACACAAGTCTGATCACCATATAGTCTGATTTCAAAGTTTCC  790

seq1  AGAGTCTTCCTATTGCATTTAGAATAAGCACACCTTCTGTAACCTCCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTTCCTATTGCATTTAGAATAAGCACACCTTCTGTAACCTCCAGA  840

seq1  CTACCATCTAATCCTATTTCAGCCCAAGTTTTCACTGAACATGATTGCGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATCTAATCCTATTTCAGCCCAAGTTTTCACTGAACATGATTGCGT  890

seq1  GTTGTGCTTTCTGGCCAGTGTCAATAGCTTTGAACTGTCCAATTGTGTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGCTTTCTGGCCAGTGTCAATAGCTTTGAACTGTCCAATTGTGTGT  940

seq1  GTCCAATCATGCAACCTTGTGCCTTCCAGTTGGAACATTCTTCATCTGGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAATCATGCAACCTTGTGCCTTCCAGTTGGAACATTCTTCATCTGGC  990

seq1  TTTGCCAGTAGCCTCAGCTTACAGGGCAGATTCTTTGTGACCACCCTGTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAGTAGCCTCAGCTTACAGGGCAGATTCTTTGTGACCACCCTGTA  1040

seq1  TCTTTCAGGGGTGGGGTAGGATTCTGTCTTTAGTCTCAGGCATCTGATGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGGGGTGGGGTAGGATTCTGTCTTTAGTCTCAGGCATCTGATGA  1090

seq1  ATTC  1104
      ||||
seq2  ATTC  1094

seq1: chr12_47617657_47618582
seq2: B6Ng01-038O05.g_66_991

seq1  GAATTCCCTCAATTTCTGTTTCTTTATTGTTTCTTCTTCCATTTTCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCAATTTCTGTTTCTTTATTGTTTCTTCTTCCATTTTCAAAG  50

seq1  TCTTAAAATTTTTTATTTGTTTCTCTCACCTTTTTGTGTTTGCTTGGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAATTTTTTATTTGTTTCTCTCACCTTTTTGTGTTTGCTTGGCTA  100

seq1  TTTGTCGGTCATAGATTTATTCATTTCCTTCATTTCTTTCTTTCTCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCGGTCATAGATTTATTCATTTCCTTCATTTCTTTCTTTCTCTTTT  150

seq1  CCTCAAGTTTTTAAAAGAGATTTAGTTATTTCCTCTTTAAGGATCTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGTTTTTAAAAGAGATTTAGTTATTTCCTCTTTAAGGATCTCTGT  200

seq1  AATATTTATAAAACAGATTTTAAGATCATTTTCTTCCACTTTAGCTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATAAAACAGATTTTAAGATCATTTTCTTCCACTTTAGCTGTTT  250

seq1  TGGAATATTTAGTTTTTGTTGTAGGATAGCTGGGGTCTGGTGATGACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATATTTAGTTTTTGTTGTAGGATAGCTGGGGTCTGGTGATGACATA  300

seq1  ATGACTTGACAATGTTGATAGCAGGCCTTCCTTACTCTGTGTTACAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTGACAATGTTGATAGCAGGCCTTCCTTACTCTGTGTTACAGCAA  350

seq1  ACCCAATTCTCAGGGTCGTCCCTAGAGCTGCAACAGAACACCAGTGGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATTCTCAGGGTCGTCCCTAGAGCTGCAACAGAACACCAGTGGCAG  400

seq1  CATTGACTTCACTCTATCCATGTCTCCTATGGGTGGTAAAAGTAACTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACTTCACTCTATCCATGTCTCCTATGGGTGGTAAAAGTAACTGTC  450

seq1  ATTCACCAGATGCAATTCACCATCTCATAGGCTTACTGCTGAATAAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCAGATGCAATTCACCATCTCATAGGCTTACTGCTGAATAAGCTC  500

seq1  ACCCTTTCCAGTTCTTTCTGAACTCTGACTGACTGGTTCAACTCAGTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTCCAGTTCTTTCTGAACTCTGACTGACTGGTTCAACTCAGTTGT  550

seq1  GCTGGGTCAAAACTCTGCTCCAAGCTTACTGATCCGCCCTGGCTTCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTCAAAACTCTGCTCCAAGCTTACTGATCCGCCCTGGCTTCTCTC  600

seq1  ACTGAATTGCTCTACTTGAAAAGAAAATTGCCTCTGAACTTCAGGAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATTGCTCTACTTGAAAAGAAAATTGCCTCTGAACTTCAGGAACTG  650

seq1  AACTCAACTGCATTCAACTGAATGGCACCAAACTCAACTGAACTAAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAACTGCATTCAACTGAATGGCACCAAACTCAACTGAACTAAATTC  700

seq1  CACTGTAATGTTTGAACTCAACTGAACTAGACTCCTGAACTTTCCTACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAATGTTTGAACTCAACTGAACTAGACTCCTGAACTTTCCTACCT  750

seq1  GCACTGCTCCAGTATCCCCAAAACTGTGTCACTAGTTGAATATGTAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGCTCCAGTATCCCCAAAACTGTGTCACTAGTTGAATATGTAGCAG  800

seq1  AGGATGGCCTAGTCAGCCATCAATGGGAGGAGAGGCCCTTGGTCTTGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGCCTAGTCAGCCATCAATGGGAGGAGAGGCCCTTGGTCTTGCAA  850

seq1  AGATCATATGCCCCAGTACCTGAGAATGCCAGGACCAGGAGACTGGAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATATGCCCCAGTACCTGAGAATGCCAGGACCAGGAGACTGGAGTG  900

seq1  GGTGGTTGGGGAGCAGGGTTGGGGGA  926
      ||||||||||||||||||||||||||
seq2  GGTGGTTGGGGAGCAGGGTTGGGGGA  926