BAC Information

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BAC

Clone NameB6Ng01-040E10
Chromosome12 (Build37)
Map Location 120,516,374 - 120,614,585
singlet/doubletdoublet
Overlap geneLOC100043011
Upstream geneSp4, LOC100042993, LOC668611, EG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557
Downstream gene4732474O15Rik, LOC668632, LOC668633, Gm528, LOC100043017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040E10.bB6Ng01-040E10.g
ACCDH867295DH867296
length1,1341,059
definitionDH867295|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E10, 5' end.DH867296|Mus musculus domesticus DNA, BAC clone: B6Ng01-040E10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,613,442 - 120,614,585)(120,516,374 - 120,517,437)
sequence
gaattccaagaaaatcactatctaaagtgtttaggatttagaatcagact
ggtacctcaataaccaaacattagattatacagctactgctctcacataa
aagtcaggaatttgttggcttatgttgctgtggaactattgtaggaggat
gaaaaaaatcagagcttcgtagactaataaatgaccaactgagtaacagg
gtggtcctctctgtatttacctccattcttcttccaacagaataggactt
ctactgctttacttgagattgccccagaaagaaaaatctccttacatatg
tccacaaaaccaatgagtcattataatctagtgatttgtatgagcattga
atttctatgtgctgagggttgagattttgttgtctgttctatgaatctaa
tctatatttcagctactctttctttgcaaagagcatttaacttctaaaag
aaatgaccaacacacaggggtaatacagattattaaaggtatatgtaact
tggtcatagagtcataggtaaagtttaaatagttttttaactttcttctt
tattataaaattattttatttatttacatttcaaatgttgccccctcttc
cctgtacccagtcccagagttcttcaccctatatcccataccctttgcct
ctaagagggtgcttcccccatccacctaccccttccccccactcaacccc
cagcatcctccttccctggggcatcaagtctttacaggattaggtacatc
ctcttccactgaggccagacaaggcagcaagtttcaatagtttaaggaat
tagtcaatatttccaaccgttcttcaggtgatagagaatgttttcaatat
tgcattgttagcaaagcaagtgaggcaagaattcaaacaactgggttcta
ctctagcttctccagttgttaagctatacaagatcaaactgagacattta
atctgagccagactttcactggctgtagtgagtgtatctctgtcttgtca
agcttcatgatatgaggttgtacagagaagttaaaggatttgaacgtcaa
agtgaacaactaaactttggatttaacctccctattcggcacataattga
ctcctttatgctcagttctaatattaggctttaa
gaattcaccacaattaagaattcaactatctggatttatttaaggagaaa
gttttaggttgatatttaacctatgtcataaataatatctactaacaggc
ctttatttaaacagagagagtacatttatgcaaaaatttaataactgctt
tattttcaccattttaaacactcagttttataataataatcattttcaat
ttcaataagtaatgtaatgttttcctccacaacacatttgtgtaggtcaa
acttgctgagtcttttaaaagacaaacctgaagtctggtggcagtaggga
agaatgaagatgactgttgtttctgagttcttcagaggggtgtggtgatg
tcattacgtaggacaggaattacaaaatagaacaaaggaaagaaaaatca
aagccaagaataagaaatgtctggcctagtattactggatatccaacaaa
gtttacttaaatcaggatccacacttcacattttcttctatgtggccaat
aaaagcatgtcataaaaacagtctttttactggtaatcctactcccttat
attaaattgcttcatctcaaacacactcattttgccctttgttctgttag
actgtaactctaggttattcccgtggttcctagttctaacttggtctagg
ttgtttttaacttgaacttgagggttttcttgagtgtttacttcactgct
ttcacttttgtgcactttctgaaatactgcatttacctaatagttcccat
gtcacaaattctaatagctatactcccataactatccttgtaccctgtct
ggccttcaaattaagacatttcccctaaccccttcttagtttgttgtttt
aacagcacaaaactgatgatcacaactgtctccgtactacatagtaagtg
aaccaaactaaggaacccaaaagatctcttcttttggtatcagtcagcaa
caccccactaccccaccctctttccaatagtttaaggtaatctcttttcc
ttccttggagcattcttctattgaaataagacattttttcttcaatttca
acttgattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_120613442_120614585
seq2: B6Ng01-040E10.b_46_1179 (reverse)

seq1  TTAAAGCCTAAAATGTAAGAAACTGAGACATAAA-GAGTCAATAATGTGC  49
      ||||||||||| || ||   ||||||| |||||| |||||||| ||||||
seq2  TTAAAGCCTAATAT-TA--GAACTGAG-CATAAAGGAGTCAATTATGTGC  46

seq1  TGAATAGAGGAGGTAAAATCCAAGGTTTTAGTTGTTTCACTTTGACGTTC  99
       |||||| |||||| |||||||| | |||||||| |||||||||||||||
seq2  CGAATAG-GGAGGTTAAATCCAAAG-TTTAGTTG-TTCACTTTGACGTTC  93

seq1  AAATCCTTTAACTTCTCTGTACAACCTCATAATCATGAAGCTTGACAAGA  149
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAATCCTTTAACTTCTCTGTACAACCTCAT-ATCATGAAGCTTGACAAGA  142

seq1  CAGAGATTACACTCACTACCAGCCAGTGAAAGTCTGGCTCAGATTAAATG  199
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  CAGAGA-TACACTCACTA-CAGCCAGTGAAAGTCTGGCTCAGATTAAATG  190

seq1  TCTCAGTTTGATCTTGTATAGCTTAACAACTGGAGAAGCTAGAGTAAGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTCAGTTTGATCTTGTATAGCTTAACAACTGGAGAAGCTAGAGT-AGAA  239

seq1  CCCAGTTGTTTGAATTCTTGCCTCACTTGCTTTGCTAACAATGCAATATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTGTTTGAATTCTTGCCTCACTTGCTTTGCTAACAATGCAATATT  289

seq1  GAAAACATTCTCTATCACCTGAAGAACGGTTGGAAATATTGACTAATTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATTCTCTATCACCTGAAGAACGGTTGGAAATATTGACTAATTCC  339

seq1  TTAAACTATTGAAACTTGCTGCCTTGTCTGGCCTCAGTGGAAGAGGATGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTATTGAAACTTGCTGCCTTGTCTGGCCTCAGTGGAAGAGGATGT  389

seq1  ACCTAATCCTGTAAAGACTTGATGCCCCAGGGAAGGAGGATGCTGGGGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAATCCTGTAAAGACTTGATGCCCCAGGGAAGGAGGATGCTGGGGGT  439

seq1  TGAGTGGGGGGAAGGGGTAGGTGGATGGGGGAAGCACCCTCTTAGAGGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGGGGGAAGGGGTAGGTGGATGGGGGAAGCACCCTCTTAGAGGCA  489

seq1  AAGGGTATGGGATATAGGGTGAAGAACTCTGGGACTGGGTACAGGGAAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTATGGGATATAGGGTGAAGAACTCTGGGACTGGGTACAGGGAAGA  539

seq1  GGGGGCAACATTTGAAATGTAAATAAATAAAATAATTTTATAATAAAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCAACATTTGAAATGTAAATAAATAAAATAATTTTATAATAAAGAA  589

seq1  GAAAGTTAAAAAACTATTTAAACTTTACCTATGACTCTATGACCAAGTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTAAAAAACTATTTAAACTTTACCTATGACTCTATGACCAAGTTA  639

seq1  CATATACCTTTAATAATCTGTATTACCCCTGTGTGTTGGTCATTTCTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACCTTTAATAATCTGTATTACCCCTGTGTGTTGGTCATTTCTTTT  689

seq1  AGAAGTTAAATGCTCTTTGCAAAGAAAGAGTAGCTGAAATATAGATTAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTAAATGCTCTTTGCAAAGAAAGAGTAGCTGAAATATAGATTAGA  739

seq1  TTCATAGAACAGACAACAAAATCTCAACCCTCAGCACATAGAAATTCAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGAACAGACAACAAAATCTCAACCCTCAGCACATAGAAATTCAAT  789

seq1  GCTCATACAAATCACTAGATTATAATGACTCATTGGTTTTGTGGACATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATACAAATCACTAGATTATAATGACTCATTGGTTTTGTGGACATAT  839

seq1  GTAAGGAGATTTTTCTTTCTGGGGCAATCTCAAGTAAAGCAGTAGAAGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGAGATTTTTCTTTCTGGGGCAATCTCAAGTAAAGCAGTAGAAGTC  889

seq1  CTATTCTGTTGGAAGAAGAATGGAGGTAAATACAGAGAGGACCACCCTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTGTTGGAAGAAGAATGGAGGTAAATACAGAGAGGACCACCCTGT  939

seq1  TACTCAGTTGGTCATTTATTAGTCTACGAAGCTCTGATTTTTTTCATCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGTTGGTCATTTATTAGTCTACGAAGCTCTGATTTTTTTCATCCT  989

seq1  CCTACAATAGTTCCACAGCAACATAAGCCAACAAATTCCTGACTTTTATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAATAGTTCCACAGCAACATAAGCCAACAAATTCCTGACTTTTATG  1039

seq1  TGAGAGCAGTAGCTGTATAATCTAATGTTTGGTTATTGAGGTACCAGTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCAGTAGCTGTATAATCTAATGTTTGGTTATTGAGGTACCAGTCT  1089

seq1  GATTCTAAATCCTAAACACTTTAGATAGTGATTTTCTTGGAATTC  1144
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTAAATCCTAAACACTTTAGATAGTGATTTTCTTGGAATTC  1134

seq1: chr12_120516374_120517437
seq2: B6Ng01-040E10.g_70_1128

seq1  GAATTCACCACAATTAAGAATTCAACTATCTGGATTTATTTAAGGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCACAATTAAGAATTCAACTATCTGGATTTATTTAAGGAGAAA  50

seq1  GTTTTAGGTTGATATTTAACCTATGTCATAAATAATATCTACTAACAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGGTTGATATTTAACCTATGTCATAAATAATATCTACTAACAGGC  100

seq1  CTTTATTTAAACAGAGAGAGTACATTTATGCAAAAATTTAATAACTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTAAACAGAGAGAGTACATTTATGCAAAAATTTAATAACTGCTT  150

seq1  TATTTTCACCATTTTAAACACTCAGTTTTATAATAATAATCATTTTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCACCATTTTAAACACTCAGTTTTATAATAATAATCATTTTCAAT  200

seq1  TTCAATAAGTAATGTAATGTTTTCCTCCACAACACATTTGTGTAGGTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAAGTAATGTAATGTTTTCCTCCACAACACATTTGTGTAGGTCAA  250

seq1  ACTTGCTGAGTCTTTTAAAAGACAAACCTGAAGTCTGGTGGCAGTAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTGAGTCTTTTAAAAGACAAACCTGAAGTCTGGTGGCAGTAGGGA  300

seq1  AGAATGAAGATGACTGTTGTTTCTGAGTTCTTCAGAGGGGTGTGGTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAAGATGACTGTTGTTTCTGAGTTCTTCAGAGGGGTGTGGTGATG  350

seq1  TCATTACGTAGGACAGGAATTACAAAATAGAACAAAGGAAAGAAAAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACGTAGGACAGGAATTACAAAATAGAACAAAGGAAAGAAAAATCA  400

seq1  AAGCCAAGAATAAGAAATGTCTGGCCTAGTATTACTGGATATCCAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAGAATAAGAAATGTCTGGCCTAGTATTACTGGATATCCAACAAA  450

seq1  GTTTACTTAAATCAGGATCCACACTTCACATTTTCTTCTATGTGGCCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTTAAATCAGGATCCACACTTCACATTTTCTTCTATGTGGCCAAT  500

seq1  AAAAGCATGTCATAAAAACAGTCTTTTTACTGGTAATCCTACTCCCTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATGTCATAAAAACAGTCTTTTTACTGGTAATCCTACTCCCTTAT  550

seq1  ATTAAATTGCTTCATCTCAAACACACTCATTTTGCCCTTTGTTCTGTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTGCTTCATCTCAAACACACTCATTTTGCCCTTTGTTCTGTTAG  600

seq1  ACTGTAACTCTAGGTTATTCCCGTGGTTCCTAGTTCTAACTTGGTCTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAACTCTAGGTTATTCCCGTGGTTCCTAGTTCTAACTTGGTCTAGG  650

seq1  TTGTTTTTAACTTGAACTTGAGGGTTTTCTTGAGTGTTTACTTCACTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTAACTTGAACTTGAGGGTTTTCTTGAGTGTTTACTTCACTGCT  700

seq1  TTCACTTTTGTGCAC-TTCTGAAATACTGCATTTACCTAATAGTTCCCAT  749
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTCACTTTTGTGCACTTTCTGAAATACTGCATTTACCTAATAGTTCCCAT  750

seq1  GTCACAAATTCTAATAGCTATACTCCCATAACTATCCTTGTACCCTGTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAATTCTAATAGCTATACTCCCATAACTATCCTTGTACCCTGTCT  800

seq1  GGCCTTCAAATTAAGACATTTCCCCTAACCCCTTCTTAGTTTGTTGTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCAAATTAAGACATTTCCCCTAACCCCTTCTTAGTTTGTTGTTTT  850

seq1  AACAGCACAAAACTGATGATCACAACTGTCTCCGTACTACATAGTAAGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCACAAAACTGATGATCACAACTGTCTCCGTACTACATAGTAAGTG  900

seq1  AACCAAACTAAGGAAACCCAAAAGATCTCTTCTTTTGGTATCAGTCAGCA  949
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AACCAAACTAAGG-AACCCAAAAGATCTCTTCTTTTGGTATCAGTCAGCA  949

seq1  ACACCCCACTACCCCACCCCTCTTTCCAATAGTTTAAGGTAAATCTCCTT  999
      |||||||||||||||| ||||||||||||||||||||||| ||||| |||
seq2  ACACCCCACTACCCCA-CCCTCTTTCCAATAGTTTAAGGT-AATCT-CTT  996

seq1  TTCCTTCCTTGGAGCAATTCTTCCTATTGAAATAGGACATTTTTCTTTCA  1049
      ||||||||||||||| |||||| ||||||||||| |||||||||  ||||
seq2  TTCCTTCCTTGGAGC-ATTCTT-CTATTGAAATAAGACATTTTTTCTTCA  1044

seq1  ATTTCAACTTGAATT  1064
      |||||||||||| ||
seq2  ATTTCAACTTGATTT  1059