BAC Information

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BAC

Clone NameB6Ng01-040L16
Chromosome12 (Build37)
Map Location 27,110,656 - 27,260,391
singlet/doubletdoublet
Overlap geneRsad2, Tyki, LOC668731, 1700020D12Rik
Upstream geneLOC100042973, LOC100042974, LOC668726, Rnf144
Downstream geneSox11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040L16.bB6Ng01-040L16.g
ACCDH867603DH867604
length1,1591,157
definitionDH867603|Mus musculus domesticus DNA, BAC clone: B6Ng01-040L16, 5' end.DH867604|Mus musculus domesticus DNA, BAC clone: B6Ng01-040L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,259,225 - 27,260,391)(27,110,656 - 27,111,850)
sequence
gaattccaatagctgactccctgagggaaatacacatatgtctcatgaca
ttggagaaaacactcgatgctgttcaccataaagaaaatgcaaatttaat
tccccagtgataagcttctccaaggatgactagactaaacaagggacaat
ggggaccaaagttctcagatgttgctggaggaactaaagacagtgagatt
ggtgtagaaacaccttggcccctaatacaaatcactgaatgatccataaa
ttaaagcctgggttgcatccaaagactgttaaaacaagtatccccttgac
aacccattcaaatgtccgtagtagcattactgggatcagtcaaaatgtgt
aaataattcacacactcatcaaattacatggatggacaaaacaggatgtc
cacacaaagtaaagacacccagtactaaaatgaacaaaaatccaagagac
tctacagtagtagtaatgtttagaaatgttgcacacaccagtcatagact
ctgtttgtaagaaaccaccagcacacacaaatctatggagaccgaaatta
gattaatggtgaggtccactaggactgacagtggtagataatttgtgggc
tattgttggacatatggatttctctttgaagtgacaggatgtttccaaac
tggttgagatgatgcatgcaagaatagcctgggaagcacagtgcgtatca
cactgtctctagtatttggtttgttgttgtttgtttgctttttttcagga
aggtctcactgtgtagccctagatgccatggcattctttttgtacaccag
ggtgggcatgaattcacctacagcatccttgcttctgccacctgagtgct
aggattaaaggcatgtgccaccataccgggcactggatagcccacttaca
tgaactgatcatgtagtggctagagtgtatcgatttgaagattgatttaa
aagttatttgcagctcagatcccactgcctacccactaattagcaaatga
aatgggtatttgccaaggtttatcatatgatggccagaggtggttaagtc
tcccggaaatcctgtcctctttcaagattatcagcatattggccggtgaa
ggtgaaagggaaaccactatctgacctcaggttcctgcaatgtccaggga
tgaaataaa
gaattctctacagacacatctgatggaggtaatttttgtttagttgaggt
tccttctccttgggtgaccttagattgtgtcaaactgacaaaccaccaaa
gagctcagtgactttctcttgggtcaatttggtatagagagggtactggt
tcttctcatgttgatgtatcctgggtctcgttttagagttcctcaggaga
tagtctatggagtcacgggtgcatttacactaagccagccacactccata
tggtcttcctgcccaagcttctaggactcttacagaatgcaccaacacag
ccattgttgcttttaagagtaaggtaatgaccttctcgtgctcaaactcc
tgttttagtgtgatagacccaggcagcctgaacactgagcaaggtgcagc
cacacaagcaccactcttgtgcccacatcataaaaggcaagcttagtttg
gttttgtacagaaccctggaggcatggtgtagagcagccatcctttatac
agtgtcctcaggtgctggggccatgatcaccatctctccaggagttccag
gcacactttataaaaaagattctgacctggggttctttcagatgtctgtt
gactctttttatacttccaagtaaaaagtccaagactgcgaagtagaaag
aggaagtcttaggacaggcagcagtaattaaagacacatttggtaaagtt
tcctggtgtgaaaccagcaggtcagagggtaaatcactgatacctcaaat
gaaaataaaataaaagccgggcagtggtggcacacgcctttaatcccagc
acttgggaggcagaggcaggcaagtttctgagtttaaggccagcctggtc
tacagagtgagtttcatgacagctaaggctatacagagaactctgtctca
aaataattaataattaataataaataataattaataatattaatatgaga
ggaaagaaagaaatagaaataataattattaataataattttaatttgag
agaaaagaaagaaaaaagagaaagcttcaagtagaagatgaggtcatgtg
aaatcctcgaataaacaaacaacctgggttttatttctcccctcgttaca
aataaatgcttctcccacacacccccttggggagtgatcctagccctgtg
acaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_27259225_27260391
seq2: B6Ng01-040L16.b_45_1203 (reverse)

seq1  TTTATTTCATACCTAGGAACATACGAGGAACATTGAGGGTCAG-TAGTGG  49
      |||||||||| |||  | ||||   ||||||  ||| |||||| ||||||
seq2  TTTATTTCATCCCT--GGACATTGCAGGAAC-CTGA-GGTCAGATAGTGG  46

seq1  TTTCCTCTCTCCACATTCACAGGCCAATATGGCTGATAATCTTTGAAGGA  99
      ||||| || | ||| ||||| ||||||||| |||||||||| ||||| ||
seq2  TTTCC-CT-TTCACCTTCACCGGCCAATAT-GCTGATAATC-TTGAAAGA  92

seq1  GGACAGGATCT-CAGGAGACTTAACCACCTCTGGCCATCATATGATAAGC  148
      ||||||||| | | |||||||||||||||||||||||||||||||||| |
seq2  GGACAGGATTTCCGGGAGACTTAACCACCTCTGGCCATCATATGATAAAC  142

seq1  CTTTGGCAAAATACCCATCTCATTTGCTAATTAGTGGGTAGGCAGTGGGA  198
      | ||||| |||||||||| |||||||||||||||||||||||||||||||
seq2  C-TTGGC-AAATACCCATTTCATTTGCTAATTAGTGGGTAGGCAGTGGGA  190

seq1  TCTGAGCTGCAAATAACTTTTAAATCAATCTTCAAAATCGATACACTCTA  248
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTGAGCTGCAAATAACTTTTAAATCAATCTTC-AAATCGATACACTCTA  239

seq1  GCCACTACATGATCAGTTCATGTAAGTGGGCTATCCAGTGCCCGGTATGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTACATGATCAGTTCATGTAAGTGGGCTATCCAGTGCCCGGTATGG  289

seq1  TGGCACATGCCTTTAATCCTAGCACTCAGGTGGCAGAAGC-AGGATGCTG  347
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGGCACATGCCTTTAATCCTAGCACTCAGGTGGCAGAAGCAAGGATGCTG  339

seq1  TAGGTGAATTCATGCCCACCCTGGTGTACAAAAAGAATGCCATGGCATCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGAATTCATGCCCACCCTGGTGTACAAAAAGAATGCCATGGCATCT  389

seq1  AGGGCTACACAGTGAGACCTTCCTGAAAAAAAGCAAACAAACAACAACAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTACACAGTGAGACCTTCCTGAAAAAAAGCAAACAAACAACAACAA  439

seq1  ACCAAATACTAGAGACAGTGTGATACGCACTGTGCTTCCCAGGCTATTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATACTAGAGACAGTGTGATACGCACTGTGCTTCCCAGGCTATTCT  489

seq1  TGCATGCATCATCTCAACCAGTTTGGAAACATCCTGTCACTTCAAAGAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCATCATCTCAACCAGTTTGGAAACATCCTGTCACTTCAAAGAGA  539

seq1  AATCCATATGTCCAACAATAGCCCACAAATTATCTACCACTGTCAGTCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATATGTCCAACAATAGCCCACAAATTATCTACCACTGTCAGTCCT  589

seq1  AGTGGACCTCACCATTAATCTAATTTCGGTCTCCATAGATTTGTGTGTGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACCTCACCATTAATCTAATTTCGGTCTCCATAGATTTGTGTGTGC  639

seq1  TGGTGGTTTCTTACAAACAGAGTCTATGACTGGTGTGTGCAACATTTCTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTTTCTTACAAACAGAGTCTATGACTGGTGTGTGCAACATTTCTA  689

seq1  AACATTACTACTACTGTAGAGTCTCTTGGATTTTTGTTCATTTTAGTACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTACTACTACTGTAGAGTCTCTTGGATTTTTGTTCATTTTAGTACT  739

seq1  GGGTGTCTTTACTTTGTGTGGACATCCTGTTTTGTCCATCCATGTAATTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCTTTACTTTGTGTGGACATCCTGTTTTGTCCATCCATGTAATTT  789

seq1  GATGAGTGTGTGAATTATTTACACATTTTGACTGATCCCAGTAATGCTAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTGTGTGAATTATTTACACATTTTGACTGATCCCAGTAATGCTAC  839

seq1  TACGGACATTTGAATGGGTTGTCAAGGGGATACTTGTTTTAACAGTCTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGACATTTGAATGGGTTGTCAAGGGGATACTTGTTTTAACAGTCTTT  889

seq1  GGATGCAACCCAGGCTTTAATTTATGGATCATTCAGTGATTTGTATTAGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCAACCCAGGCTTTAATTTATGGATCATTCAGTGATTTGTATTAGG  939

seq1  GGCCAAGGTGTTTCTACACCAATCTCACTGTCTTTAGTTCCTCCAGCAAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGGTGTTTCTACACCAATCTCACTGTCTTTAGTTCCTCCAGCAAC  989

seq1  ATCTGAGAACTTTGGTCCCCATTGTCCCTTGTTTAGTCTAGTCATCCTTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGAACTTTGGTCCCCATTGTCCCTTGTTTAGTCTAGTCATCCTTG  1039

seq1  GAGAAGCTTATCACTGGGGAATTAAATTTGCATTTTCTTTATGGTGAACA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCTTATCACTGGGGAATTAAATTTGCATTTTCTTTATGGTGAACA  1089

seq1  GCATCGAGTGTTTTCTCCAATGTCATGAGACATATGTGTATTTCCCTCAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGAGTGTTTTCTCCAATGTCATGAGACATATGTGTATTTCCCTCAG  1139

seq1  GGAGTCAGCTATTGGAATTC  1167
      ||||||||||||||||||||
seq2  GGAGTCAGCTATTGGAATTC  1159

seq1: chr12_27110656_27111850
seq2: B6Ng01-040L16.g_71_1227

seq1  GAATTCTCTACAGACACATCTGATGGAGGTAATTTTTGTTTAGTTGAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACAGACACATCTGATGGAGGTAATTTTTGTTTAGTTGAGGT  50

seq1  TCCTTCTCCTTGGGTGACCTTAGATTGTGTCAAACTGACAAACCACCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCCTTGGGTGACCTTAGATTGTGTCAAACTGACAAACCACCAAA  100

seq1  GAGCTCAGTGACTTTCTCTTGGGTCAATTTGGTATAGAGAGGGTACTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGTGACTTTCTCTTGGGTCAATTTGGTATAGAGAGGGTACTGGT  150

seq1  TCTTCTCATGTTGATGTATCCTGGGTCTCGTTTTAGAGTTCCTCAGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCATGTTGATGTATCCTGGGTCTCGTTTTAGAGTTCCTCAGGAGA  200

seq1  TAGTCTATGGAGTCACGGGTGCATTTACACTAAGCCAGCCACACTCCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTATGGAGTCACGGGTGCATTTACACTAAGCCAGCCACACTCCATA  250

seq1  TGGTCTTCCTGCCCAAGCTTCTAGGACTCTTACAGAATGCACCAACACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTCCTGCCCAAGCTTCTAGGACTCTTACAGAATGCACCAACACAG  300

seq1  CCATTGTTGCTTTTAAGAGTAAGGTAATGACCTTCTCGTGCTCAAACTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTGCTTTTAAGAGTAAGGTAATGACCTTCTCGTGCTCAAACTCC  350

seq1  TGTTTTAGTGTGATAGACCCAGGCAGCCTGAACACTGAGCAAGGTGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGTGTGATAGACCCAGGCAGCCTGAACACTGAGCAAGGTGCAGC  400

seq1  CACACAAGCACCACTCTTGTGCCCACATCATAAAAGGCAAGCTTAGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAGCACCACTCTTGTGCCCACATCATAAAAGGCAAGCTTAGTTTG  450

seq1  GTTTTGTACAGAACCCTGGAGGCATGGTGTAGAGCAGCCATCCTTTATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTACAGAACCCTGGAGGCATGGTGTAGAGCAGCCATCCTTTATAC  500

seq1  AGTGTCCTCAGGTGCTGGGGCCATGATCACCATCTCTCCAGGAGTTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCTCAGGTGCTGGGGCCATGATCACCATCTCTCCAGGAGTTCCAG  550

seq1  GCACACTTTATAAAAAAGATTCTGACCTGGGGTTCTTTCAGATGTCTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTTTATAAAAAAGATTCTGACCTGGGGTTCTTTCAGATGTCTGTT  600

seq1  GACTCTTTTTATACTTCCAAGTAAAAAGTCCAAGACTGCGAAGTAGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTTTTATACTTCCAAGTAAAAAGTCCAAGACTGCGAAGTAGAAAG  650

seq1  AGGAAGTCTTAGGACAGGCAGCAGTAATTAAAGACACATTTGGTAAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTCTTAGGACAGGCAGCAGTAATTAAAGACACATTTGGTAAAGTT  700

seq1  TCCTGGTGTGAAACCAGCAGGTCAGAGGGTAAATCACTGATACCTCAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTGTGAAACCAGCAGGTCAGAGGGTAAATCACTGATACCTCAAAT  750

seq1  GAAAATAAAATAAAAGCCGGGCAGTGGTGGCACACGCCTTTAATCCCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAAATAAAAGCCGGGCAGTGGTGGCACACGCCTTTAATCCCAGC  800

seq1  ACTTGGGAGGCAGAGGCAGGCAAGTTTCTGAGTTTAAGGCCAGCCTGGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAGGCAGAGGCAGGCAAGTTTCTGAGTTTAAGGCCAGCCTGGTC  850

seq1  TACAGAGTGAGTTTCATGACAGCCAAGGCTATACAGAGAACTCTGTCTCA  900
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TACAGAGTGAGTTTCATGACAGCTAAGGCTATACAGAGAACTCTGTCTCA  900

seq1  AAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATATATA  950
      |||       ||| ||||| |||   ||||||| ||||| |||  |||| 
seq2  AAA------TAATTAATAATTAA--TAATAAAT-AATAATTAATAATATT  941

seq1  AATATGAGAGGAAAAGAAAAGAAAAATAAGAAATAAATAAATAAATAAAT  1000
      ||||||||||||||   |||||||    ||||||     ||||| |  ||
seq2  AATATGAGAGGAAA--GAAAGAAA---TAGAAAT-----AATAATT--AT  979

seq1  AAATAAATATATAAATATGAGAGGAAAAGAAAAGAAAAAAAAGAAGAAAA  1050
       |||||  || | ||| ||||| |||||| |||||||||| ||    |||
seq2  TAATAATAATTTTAATTTGAGA-GAAAAG-AAAGAAAAAAGAG----AAA  1023

seq1  GCTTCAAAGTAAGAAGATGGATGTCATAGTGAAATTCCCTCAGAATAAAC  1100
      ||||| |||| ||||||| || ||||| |||||||  |||| ||||||||
seq2  GCTTC-AAGT-AGAAGAT-GAGGTCAT-GTGAAAT--CCTC-GAATAAAC  1066

seq1  AAACAAACATGGGTTTATTTCTCCCCACTGTTACCAATGAAATGCCTTTC  1150
      |||||| |  || ||||||||||||| | ||||| ||| ||||||  |||
seq2  AAACAACCTGGGTTTTATTTCTCCCCTC-GTTACAAAT-AAATGC--TTC  1112

seq1  TCTCACACACCTC--TGTGGAGTAGATCCTAGCCCTGTGAGCAGGTA  1195
      || |||||||| |  || ||||| |||||||||||||||| ||||||
seq2  TCCCACACACCCCCTTGGGGAGT-GATCCTAGCCCTGTGA-CAGGTA  1157