BAC Information

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BAC

Clone NameB6Ng01-041B08
Chromosome12 (Build37)
Map Location 35,874,105 - 36,077,470
singlet/doubletdoublet
Overlap genenone
Upstream geneHdac9, 4921508M14Rik, Prps1l1, Snx13
Downstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041B08.bB6Ng01-041B08.g
ACCDH867849DH867850
length847827
definitionDH867849|Mus musculus domesticus DNA, BAC clone: B6Ng01-041B08, 5' end.DH867850|Mus musculus domesticus DNA, BAC clone: B6Ng01-041B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,874,105 - 35,874,949)(36,076,651 - 36,077,470)
sequence
gaattcagacaaatggtgagatgtgacatcagaggaagatgacagggagg
gctagccaactgagtcatgatgtaaatcaaaggtaggggtgtcctaccta
gaaaatggagggcaacgcaacctcataccagcagagaaacatgacaaagt
ggctcgttgagttagtccacttgctgtttaccaccttgagtatcttcggc
ttctcttgtattgacaaagatgtctctcaggtgagaaatcatggtggtga
ctctgaggctgggtggttttcaccaccgttgtgactgggagaagaggtct
ctgggattttcctgccgtcatgtgcagtgcttggtttgagtggtacaaga
acgcctcagcaagctgttacagtgctggtctctctaggtgccccgggcct
tttctgcacaccattgctcttttaggtaaaggcatggctgagtgccggca
ccactttattcccagtaccaaatgaaaccttccttaagtgcgactacatg
ttaataaacacagtcagtgggacccacttaaaaagaatgacctgtttatg
aaagaaaccctttgaaagatagaatatttccccctgtgggccagagcgca
ggcagcaaacaaggggctctttcaaaggcatacaacgtggtgggggaggg
attccaacttcctaactacaaaaataatgatacttttagcttcaacctgt
cttgcttcagggagttgtaaatgaactttatgggcataagcgggaacctc
tccaattttcttctttgttattggtatttcctaaggtggatatgatctga
accctagtgcacgtcctggaaatggaggcagcggcaaagctggacaa
gaattcttttgctaatctactgttaaatgtgttgttatttcttattttct
tttaatgaaaggactattcaaatcaggtagttctttttaatgttctaaaa
ataacaattgcatgcttttcagcctgctgtacaagtacaatactagcaaa
cacaaccctatttacctcctgaattaaggacatgacattatctcttatag
aatcccctcattactcctattgtctttggctccttgtaaataatatcctc
atttaagtcttttatactcatttgtatttccacaggttgtaaactttgtc
cctggtacaaagagcagtagtctctcaaaaagtgaagttagctctcatct
gaaactcatgtcttctaaaaaggggacctggtgcctcttctgtaacttct
gcattgctttcctggcaagcagacaacttcatcagagcaaccagccaagg
agactctttaaatggaagctgtgcacacaaggagcaaacgcattaaaaag
ttgctgacgggcatgaaatgctttgatgtgaagatggaaaactccagagc
aggaaggatttgaggcattttgagtctcattgactctgtggtttctctgc
agttatttccacaaggctaaaataaatgcagaaatggtatttttgaggcc
acagctgcagagggactgtgatgaatttcaattgaaaaatctagctgatc
gtgaagaatttgggtctttaaaaacccttaggaacaggagaatgttgttg
cttgcaattttcattttatctaagaagtaaaaagggaaacctcacttttt
tactcccagatgcatatcgactatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_35874105_35874949
seq2: B6Ng01-041B08.b_44_890

seq1  GAATTCAGACAAATGGTGAGATGTGACATCAGAGGAAGATGACAGGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACAAATGGTGAGATGTGACATCAGAGGAAGATGACAGGGAGG  50

seq1  GCTAGCCAACTGAGTCATGATGTAAATCAAAGGTAGGGGTGTCCTACCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCAACTGAGTCATGATGTAAATCAAAGGTAGGGGTGTCCTACCTA  100

seq1  GAAAATGGAGGGCAACGCAACCTCATACCAGCAGAGAAACATGACAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGAGGGCAACGCAACCTCATACCAGCAGAGAAACATGACAAAGT  150

seq1  GGCTCGTTGAGTTAGTCCACTTGCTGTTTACCACCTTGAGTATCTTCGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGTTGAGTTAGTCCACTTGCTGTTTACCACCTTGAGTATCTTCGGC  200

seq1  TTCTCTTGTATTGACAAAGATGTCTCTCAGGTGAGAAATCATGGTGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGTATTGACAAAGATGTCTCTCAGGTGAGAAATCATGGTGGTGA  250

seq1  CTCTGAGGCTGGGTGGTTTTCACCACCGTTGTGACTGGGAGAAGAGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGCTGGGTGGTTTTCACCACCGTTGTGACTGGGAGAAGAGGTCT  300

seq1  CTGGGATTTTCCTGCCGTCATGTGCAGTGCTTGGTTTGAGTGGTACAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTTTCCTGCCGTCATGTGCAGTGCTTGGTTTGAGTGGTACAAGA  350

seq1  ACGCCTCAGCAAGCTGTTACAGTGCTGGTCTCTCTAGGTGCCCCGGGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTCAGCAAGCTGTTACAGTGCTGGTCTCTCTAGGTGCCCCGGGCCT  400

seq1  TTTCTGCACACCATTGCTCTTTTAGGTAAAGGCATGGCTGAGTGCCGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCACACCATTGCTCTTTTAGGTAAAGGCATGGCTGAGTGCCGGCA  450

seq1  CCACTTTATTCCCAGTACCAAATGAAACCTTCCTTAAGTGCGACTACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTATTCCCAGTACCAAATGAAACCTTCCTTAAGTGCGACTACATG  500

seq1  TTAATAAACACAGTCAGTGGGACCCACTTAAAAAGAATGACCTGTTTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAACACAGTCAGTGGGACCCACTTAAAAAGAATGACCTGTTTATG  550

seq1  AAAGAAACCCTTTGAAAGATAGAATATTTCCCCCTGTGGGCCAGAGCGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACCCTTTGAAAGATAGAATATTTCCCCCTGTGGGCCAGAGCGCA  600

seq1  GGCAGCAAACAAGGGGCTCTTTCAAAGGCATACAACGTGGTGGGGGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAAACAAGGGGCTCTTTCAAAGGCATACAACGTGGTGGGGGAGGG  650

seq1  ATTCCAACTTCCTAACTACAAAAATAATGATACTTTTAGCTTCAACCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAACTTCCTAACTACAAAAATAATGATACTTTTAGCTTCAACCTGT  700

seq1  CTTGCTTCAGGGAGTTGTAAATGAACTTTATGGGCATAAGC-GGAACCTC  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTGCTTCAGGGAGTTGTAAATGAACTTTATGGGCATAAGCGGGAACCTC  750

seq1  TCCAA-TTTCTTCTTTGTTATTGGTATTTCCTAA-GTGGATATGATCTGA  797
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  TCCAATTTTCTTCTTTGTTATTGGTATTTCCTAAGGTGGATATGATCTGA  800

seq1  ACCCTAGTGCACGTCCTGGGAAATGGAGGCAGTGGGCAAGCTGGACAA  845
      ||||||||||||||||| |||||||||||||| ||  |||||||||||
seq2  ACCCTAGTGCACGTCCT-GGAAATGGAGGCAGCGGCAAAGCTGGACAA  847

seq1: chr12_36076651_36077470
seq2: B6Ng01-041B08.g_70_895 (reverse)

seq1  CCATAGTCGATATGCATCTTGGGAGT-AAAAAGTGAGGTTTCCCTTTTTA  49
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  CCATAGTCGATATGCATC-TGGGAGTAAAAAAGTGAGGTTTCCCTTTTTA  49

seq1  CTTCTTAGATAAAATG-AAATTGCAAGCAACAACATTCTCCTGTTCCTA-  97
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  CTTCTTAGATAAAATGAAAATTGCAAGCAACAACATTCTCCTGTTCCTAA  99

seq1  -GGGTTTTAAAGA-CCAAATTCTTCACGATTCAGCTAGATTTT--CATTG  143
       || ||||||||| ||||||||||||||| |||||||||||||   ||||
seq2  GGGTTTTTAAAGACCCAAATTCTTCACGA-TCAGCTAGATTTTTCAATTG  148

seq1  AAATTCATCACAGTCCCTCTGCAGCTGTGGCCTCAAAAATACCATTTCTG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATCACAGTCCCTCTGCAGCTGTGGCCTCAAAAATACCATTTCTG  198

seq1  CATTTATTTTAGCCTTGTGG-AATAACTGCAGAGAAACCACAGAGTCAAT  242
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CATTTATTTTAGCCTTGTGGAAATAACTGCAGAGAAACCACAGAGTCAAT  248

seq1  GAGACTCAAAATGCCTCAAATCCTTCCTGCTCTGGAGTTTTCCATCTTCA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCAAAATGCCTCAAATCCTTCCTGCTCTGGAGTTTTCCATCTTCA  298

seq1  CATCAAAGCATTTCATGCCCGTCAGCAACTTTTTAATGCGTTTGCTCCTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAGCATTTCATGCCCGTCAGCAACTTTTTAATGCGTTTGCTCCTT  348

seq1  GTGTGCACAGCTTCCATTTAAAGAGTCTCCTTGGCTGGTTGCTCTGATGA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCACAGCTTCCATTTAAAGAGTCTCCTTGGCTGGTTGCTCTGATGA  398

seq1  AGTTGTCTGCTTGCCAGGAAAGCAATGCAGAAGTTACAGAAGAGGCACCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCTGCTTGCCAGGAAAGCAATGCAGAAGTTACAGAAGAGGCACCA  448

seq1  GGTCCCCTTTTTAGAAGACATGAGTTTCAGATGAGAGCTAACTTCACTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCTTTTTAGAAGACATGAGTTTCAGATGAGAGCTAACTTCACTTT  498

seq1  TTGAGAGACTACTGCTCTTTGTACCAGGGACAAAGTTTACAACCTGTGGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGACTACTGCTCTTTGTACCAGGGACAAAGTTTACAACCTGTGGA  548

seq1  AATACAAATGAGTATAAAAGACTTAAATGAGGATATTATTTACAAGGAGC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAATGAGTATAAAAGACTTAAATGAGGATATTATTTACAAGGAGC  598

seq1  CAAAGACAATAGGAGTAATGAGGGGATTCTATAAGAGATAATGTCATGTC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACAATAGGAGTAATGAGGGGATTCTATAAGAGATAATGTCATGTC  648

seq1  CTTAATTCAGGAGGTAAATAGGGTTGTGTTTGCTAGTATTGTACTTGTAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTCAGGAGGTAAATAGGGTTGTGTTTGCTAGTATTGTACTTGTAC  698

seq1  AGCAGGCTGAAAAGCATGCAATTGTTATTTTTAGAACATTAAAAAGAACT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCTGAAAAGCATGCAATTGTTATTTTTAGAACATTAAAAAGAACT  748

seq1  ACCTGATTTGAATAGTCCTTTCATTAAAAGAAAATAAGAAATAACAACAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATTTGAATAGTCCTTTCATTAAAAGAAAATAAGAAATAACAACAC  798

seq1  ATTTAACAGTAGATTTGCAAAAGAATTC  820
      ||||||||||||||| ||||||||||||
seq2  ATTTAACAGTAGATTAGCAAAAGAATTC  826