BAC Information

Click to search

BAC

Clone NameB6Ng01-042C23
Chromosome12 (Build37)
Map Location 34,270,599 - 34,375,713
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801
Downstream geneLOC668806, Ferd3l, Twist1, Hdac9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042C23.bB6Ng01-042C23.g
ACCDH868633DH868634
length864969
definitionDH868633|Mus musculus domesticus DNA, BAC clone: B6Ng01-042C23, 5' end.DH868634|Mus musculus domesticus DNA, BAC clone: B6Ng01-042C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,374,849 - 34,375,713)(34,270,599 - 34,271,191)
sequence
gaattcaactgcccttggaaggcaaaagaaagcacaagataccctgaaat
tggggttacaggcatttgtaagctacatgatgttggtgctggaaattaaa
catgggtcatctggagagtagcagtgttattaattgttaaaccatctctt
cagaccccagaggatgcacttttggaattggtgtcatatcctgtagcctt
tgcctcaaacatagcccatccctctgcttagcctcctgagttatggatta
catcatctgtttgtggtaggcctggttaaaaaaaaaaagtctagagattg
gggtattttttggttttggttttggtttttgtcagttttttgtttgtttg
tttgtttgtttgtttttcttttaagacaaagtctcaacatgtaaatatgg
ctgccttggaactcaagaactatgtagaccaggttggcctcaaactcaca
gagatcttcctatctctgcctacccagcactgggattaaaggtgtgcact
accactgtgcttagccaatctagagaatttttgatgatgcaaatatctag
ttatttgaagaaagtctagtttgcactgccaaattgcatatctatcatct
aatgtctatgatggatgcatgaaaaaataaaatactttcagagtcataat
gaactcactcattctacacaattctgtaatccctttcattcttttaagtt
atcaaaaagtttctttgaacaaaagatctcacaaatctgtacctttttct
tgtgttattctctggcatattgaaaactatgcactccaatcgtggtagac
tagtttttttttttttaatagtctgaagttacttgaaaatggtacctttt
catgacaataataa
gaattcctggctactgtctttctgctagctccatgtcgagaacttttgtt
ctgcctctagaatggcagaccgagatttctgactaaattgcaggatcact
ttggtagatgcagaaaacaaactgatcagattagatttccccttgtattc
ggacgttctaaattagacacagaaaagacatatgccaaaatgctaagggc
tgcgtgtgaaacctataattgaaattgctctgcggggaaaagatgaaatg
tttcttgtaagcataggattagaggagggggaacacttttcccactcttc
taaaaatacgattggaagtctccgcaagagcagtcaggaaaagcaaagaa
agagaagaggtgcgagtaggagatgaaggagttaaagtttaaggtttaca
aataatatgattccacaggcaaaccatttaaatatattgccaaaaaatag
gactgataaggaggccacagaggacaaacttgacaaataagaagagactc
aattttacacatgaattacaagtttggtgaaaaaggaataaaccctgttc
aaaatagttacagtagaaaaatatttagaaatgatgaccaagaagtgaaa
gacatgtaacataaaaattataaaacaccaacaagagaactgatttagga
gtcaatgaatggagataccctgggttcatgttgatagactggaagagata
ttgttagaataaccatagtaactaaagtgacttatctattcagtgctttt
ctcatcaacataccaacagctttcttcagagaaatagagaaaccaaccct
gaaatttatacagcgctcgaaaaacatgcagaatagttagtgacactggg
caaaagaaaaacacacagtgactatacataggtccggcttttaaaacaga
cactcagaccagaagaatagcacaaggaacacagaatttacatggatgta
tattcagaaagccagctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_34374849_34375713
seq2: B6Ng01-042C23.b_40_903 (reverse)

seq1  TTATTATTGTCATGGAATGGTACCATTTTACAATGTAACTTCAGGCTATT  50
      |||||||||||||| || ||||||||||| ||| |||||||||| |||||
seq2  TTATTATTGTCATGAAAAGGTACCATTTT-CAA-GTAACTTCAGACTATT  48

seq1  AAAAAAAAAAAAAACTAGTCTACCACGATTGGAGTGCATAGTTTTCAATA  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAAAAAAAAAAACTAGTCTACCACGATTGGAGTGCATAGTTTTCAATA  97

seq1  TGCCAGAGAATAACACAAG-AAAAGGTACAGATTTGTGAGATCTTTTGTG  149
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  TGCCAGAGAATAACACAAGAAAAAGGTACAGATTTGTGAGATCTTTTGT-  146

seq1  TCAAAGAAAC-TTTTGATAACTT-AAAGAATGAAAGGGATTACAGAATTG  197
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  TCAAAGAAACTTTTTGATAACTTAAAAGAATGAAAGGGATTACAGAATTG  196

seq1  TGTAGAATGAGTGAGTTCATTATGACTCTGAAAGTATTTTATTTTTTCAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAATGAGTGAGTTCATTATGACTCTGAAAGTATTTTATTTTTTCAT  246

seq1  GCATCCATCATAGACATTAGATGATAGATATGCAATTTGGCAGTGCAAAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCATCATAGACATTAGATGATAGATATGCAATTTGGCAGTGCAAAC  296

seq1  TAGACTTTCTTCAAATAACTAGATATTTGCATCATCAAAAATTCTCTAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTTCTTCAAATAACTAGATATTTGCATCATCAAAAATTCTCTAGA  346

seq1  TTGGCTAAGCACAGTGGTAGTGCACACCTTTAATCCCAGTGCTGGGTAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTAAGCACAGTGGTAGTGCACACCTTTAATCCCAGTGCTGGGTAGG  396

seq1  CAGAGATAGGAAGATCTCTGTGAGTTTGAGGCCAACCTGGTCTACATAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATAGGAAGATCTCTGTGAGTTTGAGGCCAACCTGGTCTACATAGT  446

seq1  TCTTGAGTTCCAAGGCAGCCATATTTACATGTTGAGACTTTGTCTTAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGTTCCAAGGCAGCCATATTTACATGTTGAGACTTTGTCTTAAAA  496

seq1  GAAAAACAAACAAACAAACAAACAAACAAAAAACTGACAAAAACCAAAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACAAACAAACAAACAAACAAACAAAAAACTGACAAAAACCAAAAC  546

seq1  CAAAACCAAAAAATACCCCAATCTCTAGACTTTTTTTTTTTAACCAGGCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCAAAAAATACCCCAATCTCTAGACTTTTTTTTTTTAACCAGGCC  596

seq1  TACCACAAACAGATGATGTAATCCATAACTCAGGAGGCTAAGCAGAGGGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAAACAGATGATGTAATCCATAACTCAGGAGGCTAAGCAGAGGGA  646

seq1  TGGGCTATGTTTGAGGCAAAGGCTACAGGATATGACACCAATTCCAAAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTATGTTTGAGGCAAAGGCTACAGGATATGACACCAATTCCAAAAG  696

seq1  TGCATCCTCTGGGGTCTGAAGAGATGGTTTAACAATTAATAACACTGCTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCTCTGGGGTCTGAAGAGATGGTTTAACAATTAATAACACTGCTA  746

seq1  CTCTCCAGATGACCCATGTTTAATTTCCAGCACCAACATCATGTAGCTTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGATGACCCATGTTTAATTTCCAGCACCAACATCATGTAGCTTA  796

seq1  CAAATGCCTGTAACCCCAATTTCAGGGTATCTTGTGCTTTCTTTTGCCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCCTGTAACCCCAATTTCAGGGTATCTTGTGCTTTCTTTTGCCTT  846

seq1  CCAAGGGCAGTTGAATTC  865
      ||||||||||||||||||
seq2  CCAAGGGCAGTTGAATTC  864

seq1: chr12_34270599_34271191
seq2: B6Ng01-042C23.g_67_659

seq1  GAATTCCTGGCTACTGTCTTTCTGCTAGCTCCATGTCGAGAACTTTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGCTACTGTCTTTCTGCTAGCTCCATGTCGAGAACTTTTGTT  50

seq1  CTGCCTCTAGAATGGCAGACCGAGATTTCTGACTAAATTGCAGGATCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTAGAATGGCAGACCGAGATTTCTGACTAAATTGCAGGATCACT  100

seq1  TTGGTAGATGCAGAAAACAAACTGATCAGATTAGATTTCCCCTTGTATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGATGCAGAAAACAAACTGATCAGATTAGATTTCCCCTTGTATTC  150

seq1  GGACGTTCTAAATTAGACACAGAAAAGACATATGCCAAAATGCTAAGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGTTCTAAATTAGACACAGAAAAGACATATGCCAAAATGCTAAGGGC  200

seq1  TGCGTGTGAAACCTATAATTGAAATTGCTCTGCGGGGAAAAGATGAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGTGAAACCTATAATTGAAATTGCTCTGCGGGGAAAAGATGAAATG  250

seq1  TTTCTTGTAAGCATAGGATTAGAGGAGGGGGAACACTTTTCCCACTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTAAGCATAGGATTAGAGGAGGGGGAACACTTTTCCCACTCTTC  300

seq1  TAAAAATACGATTGGAAGTCTCCGCAAGAGCAGTCAGGAAAAGCAAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATACGATTGGAAGTCTCCGCAAGAGCAGTCAGGAAAAGCAAAGAA  350

seq1  AGAGAAGAGGTGCGAGTAGGAGATGAAGGAGTTAAAGTTTAAGGTTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAGGTGCGAGTAGGAGATGAAGGAGTTAAAGTTTAAGGTTTACA  400

seq1  AATAATATGATTCCACAGGCAAACCATTTAAATATATTGCCAAAAAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATGATTCCACAGGCAAACCATTTAAATATATTGCCAAAAAATAG  450

seq1  GACTGATAAGGAGGCCACAGAGGACAAACTTGACAAATAAGAAGAGACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATAAGGAGGCCACAGAGGACAAACTTGACAAATAAGAAGAGACTC  500

seq1  AATTTTACACATGAATTACAAGTTTGGTGAAAAAGGAATAAACCCTGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACACATGAATTACAAGTTTGGTGAAAAAGGAATAAACCCTGTTC  550

seq1  AAAATAGTTACAGTAGAAAAATATTTAGAAATGATGACCAAGA  593
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTTACAGTAGAAAAATATTTAGAAATGATGACCAAGA  593