BAC Information

Click to search

BAC

Clone NameB6Ng01-044B05
Chromosome12 (Build37)
Map Location 55,708,307 - 55,847,377
singlet/doubletdoublet
Overlap geneLOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6
Upstream geneNpas3, Egln3, EG665239, EG665251, LOC665256
Downstream geneCfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2, Garnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044B05.bB6Ng01-044B05.g
ACCDH869936DH869937
length7601,108
definitionDH869936|Mus musculus domesticus DNA, BAC clone: B6Ng01-044B05, 5' end.DH869937|Mus musculus domesticus DNA, BAC clone: B6Ng01-044B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,846,619 - 55,847,377)(55,708,307 - 55,709,436)
sequence
gaattcagggtagcgataataaatctactccggcattatgctttacagtg
aaggtcttttctttatcttttttttttctttctttcctccctcccccacc
ccccggccccctttgtttgaaatggccaaaccaggttcactgaatgcttt
acctcacgtagagtgaccttctgggtgcactgattcaaaatgcaggagta
tcatggttccctagatccccgtctacaattccctggattccctgcctatc
tcagcagataaccgggagacattcgtcagccgagccatttggtggctacc
atggctgtctagtgagtggtgtagaggaaaagctatctgctaggaggagg
gagggggtggtccccaggacgaaaggtggggtgcagacagatgaagagtc
cctgggtctgtgtcacccacgcctggtctttctgactggcccagactgct
tcctgtgcccccagtgtaaactggacttggatgatggacttctcatatat
ttcttactcctctcctatttggaaaccacagggagttcggctggtcaccc
tggaacgagttcctagtttgtttacatttctacaaaccaccctgatgatt
ctgggtcagggtctacccaagacccagacccagcctcctccctctgctgg
ttagtgtgcttgctctcttgacatgtttgccggtgccgttccaacgttgg
tttttctgttatcggtccagacatttttttgtcctttgtgtgcgtgaccc
taattggtag
gaattccagggctacgtggagaaaccctgtttcaaaaacaaaaaaacaaa
aagactgaccaaatcttttctttccttttttttctcttacttgtgattgc
ctgcagtagtttaataaacaccaaatgctggaagttacttaaccacacta
cccagattggaattctcactagttcaaatttacaaagctcttttaaaaca
atagtagctatcagaggaaaaaaaaaaaaaaaaacctcacattttaattt
tgcatactcaagtcacctatttggtcaactaagaggagccaatttgatta
ccagaaagtatttcagcagcatcagttatataaatgtatctatttcatgt
accacaaataagctttctgtgcagaggaacacttgacagagcaagacaaa
aggacccaagtgcttcctctaaaggtgccaaacccgtttttccaagaaaa
gtatcttcagggttaggacctgaacaaaacttccttctttaaaaatgcac
acacaaagtcttttgcctccagcagtataagctccttaacacggtagtaa
ttacaggtatttagctcaaaacttttcctaattttcaggattaaaaccag
tattgtgtcaagtatggaaactaattcttcccttaggtctcctcaaagtc
aatgaatcccatttcttcatctccttgtgtcaggactgctgtcaatatca
acccctcattcttgtcctgaagggtttctgtcaggccgtctgtgctatgc
caagtcaatagacagtaaagagttccaccagtactagaatctattattct
gccaaaatgcttcgttatgctacactgcggtgccagcaaactggtgctag
gctggcacagccactggtttgagattctcttttactaagccaagttacct
ggtggtatgtttaacctcaaaaggtagcttttggatggacaggatcagac
tatgtcaacccagtgtcatccctgcagatgagtggccttgaatgcatttg
cagagcctctttagcattggatagatgaaaaaagagaaacccatctgtac
tagcagagctactgatactcataggacttctctgcaatttactaggtctg
cttattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_55846619_55847377
seq2: B6Ng01-044B05.b_45_804 (reverse)

seq1  CTACCAATTAGGGTCACGCACACAAAGGAC-AAAAAATGTCTGGGCCGAT  49
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  CTACCAATTAGGGTCACGCACACAAAGGACAAAAAAATGTCTGGACCGAT  50

seq1  AACAGAAAAACCAACGTTGGAACGGCACCGGCAAACATGTCAAGAGAGCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAAAACCAACGTTGGAACGGCACCGGCAAACATGTCAAGAGAGCA  100

seq1  AGCACACTAACCAGCAGAGGGAGGAGGCTGGGTCTGGGTCTTGGGTAGAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACTAACCAGCAGAGGGAGGAGGCTGGGTCTGGGTCTTGGGTAGAC  150

seq1  CCTGACCCAGAATCATCAGGGTGGTTTGTAGAAATGTAAACAAACTAGGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCCAGAATCATCAGGGTGGTTTGTAGAAATGTAAACAAACTAGGA  200

seq1  ACTCGTTCCAGGGTGACCAGCCGAACTCCCTGTGGTTTCCAAATAGGAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGTTCCAGGGTGACCAGCCGAACTCCCTGTGGTTTCCAAATAGGAGA  250

seq1  GGAGTAAGAAATATATGAGAAGTCCATCATCCAAGTCCAGTTTACACTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAAGAAATATATGAGAAGTCCATCATCCAAGTCCAGTTTACACTGG  300

seq1  GGGCACAGGAAGCAGTCTGGGCCAGTCAGAAAGACCAGGCGTGGGTGACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAGGAAGCAGTCTGGGCCAGTCAGAAAGACCAGGCGTGGGTGACA  350

seq1  CAGACCCAGGGACTCTTCATCTGTCTGCACCCCACCTTTCGTCCTGGGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCAGGGACTCTTCATCTGTCTGCACCCCACCTTTCGTCCTGGGGA  400

seq1  CCACCCCCTCCCTCCTCCTAGCAGATAGCTTTTCCTCTACACCACTCACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCTCCCTCCTCCTAGCAGATAGCTTTTCCTCTACACCACTCACT  450

seq1  AGACAGCCATGGTAGCCACCAAATGGCTCGGCTGACGAATGTCTCCCGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCCATGGTAGCCACCAAATGGCTCGGCTGACGAATGTCTCCCGGT  500

seq1  TATCTGCTGAGATAGGCAGGGAATCCAGGGAATTGTAGACGGGGATCTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCTGAGATAGGCAGGGAATCCAGGGAATTGTAGACGGGGATCTAG  550

seq1  GGAACCATGATACTCCTGCATTTTGAATCAGTGCACCCAGAAGGTCACTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCATGATACTCCTGCATTTTGAATCAGTGCACCCAGAAGGTCACTC  600

seq1  TACGTGAGGTAAAGCATTCAGTGAACCTGGTTTGGCCATTTCAAACAAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGAGGTAAAGCATTCAGTGAACCTGGTTTGGCCATTTCAAACAAAG  650

seq1  GGGGCCGGGGGGTGGGGGAGGGAGGAAAGAAAGAAAAAAAAAAGATAAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCGGGGGGTGGGGGAGGGAGGAAAGAAAGAAAAAAAAAAGATAAAG  700

seq1  AAAAGACCTTCACTGTAAAGCATAATGCCGGAGTAGATTTATTATCGCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACCTTCACTGTAAAGCATAATGCCGGAGTAGATTTATTATCGCTA  750

seq1  CCCTGAATTC  759
      ||||||||||
seq2  CCCTGAATTC  760

seq1: chr12_55708307_55709436
seq2: B6Ng01-044B05.g_68_1175

seq1  GAATTCCAGGGCTACGTGGAGAAACCCTGTTTCAAAAACAAAAAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGCTACGTGGAGAAACCCTGTTTCAAAAACAAAAAAACAAA  50

seq1  AAGACTGACCAAATCTTTTCTTTCCTTTTTTTTCTCTTACTTGTGATTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGACCAAATCTTTTCTTTCCTTTTTTTTCTCTTACTTGTGATTGC  100

seq1  CTGCAGTAGTTTAATAAACACCAAATGCTGGAAGTTACTTAACCACACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTAGTTTAATAAACACCAAATGCTGGAAGTTACTTAACCACACTA  150

seq1  CCCAGATTGGAATTCTCACTAGTTCAAATTTACAAAGCTCTTTTAAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATTGGAATTCTCACTAGTTCAAATTTACAAAGCTCTTTTAAAACA  200

seq1  ATAGTAGCTATCAGAGGAAAAAAAAAAAAAAAAACCTCACATTTTAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGCTATCAGAGGAAAAAAAAAAAAAAAAACCTCACATTTTAATTT  250

seq1  TGCATACTCAAGTCACCTATTTGGTCAACTAAGAGGAGCCAATTTGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACTCAAGTCACCTATTTGGTCAACTAAGAGGAGCCAATTTGATTA  300

seq1  CCAGAAAGTATTTCAGCAGCATCAGTTATATAAATGTATCTATTTCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAGTATTTCAGCAGCATCAGTTATATAAATGTATCTATTTCATGT  350

seq1  ACCACAAATAAGCTTTCTGTGCAGAGGAACACTTGACAGAGCAAGACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAATAAGCTTTCTGTGCAGAGGAACACTTGACAGAGCAAGACAAA  400

seq1  AGGACCCAAGTGCTTCCTCTAAAGGTGCCAAACCCGTTTTTCCAAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCAAGTGCTTCCTCTAAAGGTGCCAAACCCGTTTTTCCAAGAAAA  450

seq1  GTATCTTCAGGGTTAGGACCTGAACAAAACTTCCTTCTTTAAAAATGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTCAGGGTTAGGACCTGAACAAAACTTCCTTCTTTAAAAATGCAC  500

seq1  ACACAAAGTCTTTTGCCTCCAGCAGTATAAGCTCCTTAACACGGTAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGTCTTTTGCCTCCAGCAGTATAAGCTCCTTAACACGGTAGTAA  550

seq1  TTACAGGTATTTAGCTCAAAACTTTTCCTAATTTTCAGGATTAAAACCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGTATTTAGCTCAAAACTTTTCCTAATTTTCAGGATTAAAACCAG  600

seq1  TATTGTGTCAAGTATGGAAACTAATTCTTCCCTTAGGTCTCCTCAAAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGTCAAGTATGGAAACTAATTCTTCCCTTAGGTCTCCTCAAAGTC  650

seq1  AATGAATCCCATTTCTTCATCTCCTTGTGTCAGGACTGCTGTCAATATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATCCCATTTCTTCATCTCCTTGTGTCAGGACTGCTGTCAATATCA  700

seq1  ACCCCTCATTCTTGTCCTGAAGGGTTTCTGTCAGGCCGTCTGTGCTATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCATTCTTGTCCTGAAGGGTTTCTGTCAGGCCGTCTGTGCTATGC  750

seq1  CAAGTCAATAGACAGTAAAGAGTTCCACCAGTACTAGAATCTATTATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAATAGACAGTAAAGAGTTCCACCAGTACTAGAATCTATTATTCT  800

seq1  GCCAAAATGCTTCGTTATGCTACACTGCGGTGCCAGCAAACTGGTGCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAATGCTTCGTTATGCTACACTGCGGTGCCAGCAAACTGGTGCTAG  850

seq1  GCTGGCACAGCCACTGGTTTGAGATTCTCTTTTACTAAGCCAAGTTACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCACAGCCACTGGTTTGAGATTCTCTTTTACTAAGCCAAGTTACCT  900

seq1  -GTGGTATGTTTAACCTCAAAAGGTAGCTTTTGGATGGACAGGATCAGAC  949
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTATGTTTAACCTCAAAAGGTAGCTTTTGGATGGACAGGATCAGAC  950

seq1  TATGTCCAACCCAGTGTCATCCCTGCAGATGAGTGGCCTTGAATGCATTT  999
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGT-CAACCCAGTGTCATCCCTGCAGATGAGTGGCCTTGAATGCATTT  999

seq1  GCAGAGGCCTCTTTAGCAATTGGATAAAAAAGAAAAAAAAAAAAAGGAAA  1049
      ||||| ||||||||||| |||||||     |||  |||||| |   ||||
seq2  GCAGA-GCCTCTTTAGC-ATTGGAT-----AGATGAAAAAAGA---GAAA  1039

seq1  CCCATCTGTACCTTAGCCAGAGCTACTTGATAACCCCATAGGAACCTTCT  1099
      |||||||||||  ||| ||||||||| |||||  | |||||||  |||| 
seq2  CCCATCTGTAC--TAG-CAGAGCTAC-TGATA--CTCATAGGA--CTTC-  1080

seq1  TCTGCAATTACATAGGGTCTGCTTTTATTCT  1130
      |||||||||   || |||||||  |||||||
seq2  TCTGCAATTTACTA-GGTCTGC--TTATTCT  1108