BAC Information

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BAC

Clone NameB6Ng01-044D04
Chromosome12 (Build37)
Map Location 120,921,941 - 121,057,908
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632
Downstream geneLOC668633, Gm528, LOC100043017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044D04.bB6Ng01-044D04.g
ACCDH870022DH870023
length1,0741,067
definitionDH870022|Mus musculus domesticus DNA, BAC clone: B6Ng01-044D04, 5' end.DH870023|Mus musculus domesticus DNA, BAC clone: B6Ng01-044D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,056,817 - 121,057,908)(120,921,941 - 120,923,009)
sequence
gaattctttgttcagttctgagccccatttttaatgggattatttgattt
tctggagtccaccttcttgagttctttatatatattgtatattagtcctc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgacggtgtcttttgccgcttcaagtacttttatttacat
tcctacagagatttcaattctccttccaccaagtccaaaactaagtacat
atcatagttcatttaaaaaatattttctatgaattagctggtaaaatttc
caatctatggtaaggatagggagttttatagcaacactatttcacataga
taaacagtcaatatcagtaaacatcattagcgatacacacatagttgtta
ctagtttcttcattccagtttgtcctactttgctttgattatatatatga
gatatgttataaaacactgatcaaaaacaacatgagggaggaaaggattt
gtttggtttactgttccacatcacagtctatcatcaagaaaagccagggc
agaaactcaaggaagaacttggaggtaggatttgaggcaggaaccatgga
ggagatgtcatttactggcttgtactctggctcatggtcagcagctgtca
ttatatttttccaaaattgccagtcctgggatggcatttttcacagtggg
ctgggaattcccacatcaacggtagataaagaaaataccttgctggcttg
cctaaacactagtttgatagcctctcttcctagatgaccctagcttgtgc
ctagttgaaaaaatatccattaaatacacaacttttacctgattatttga
acttatagtttctccatcatttctaaccattctcttgctctcgttcctac
atctgggcagtgctctcccatgagaagtgtttaaattgtattccaagtag
tccactggctaagcaagaaaagacacacaattactatagttattatgcaa
agtttgacgaaaagcaagttgtaatatttttaggactagcacatcaggag
tgtagcagtatagtagaaaacatg
gaattcatttcagcagaattctaggaaacatcgcttacacacagattctg
agcacctaaaataaagtgatcaagaggaatcagcgtctgtgcttttacag
caagtcatggtagatacagctcttcccttcccttaatagggttactaagc
aggccatcagagaaatgtattaagcatgacgtatctgggttccagcaagc
aattaaacaagatttctcatgatgttcttaaggtcaagagagagggaata
tggccaagtacaacagcagttaggtggaaaagttgctgctcagatcattt
tttcccaaatgtttttaattaatgtcagcctgcccagtggatcccagcca
tgcaacaaccacttttcattccatgcctatagcttaacattctggtcaat
tattggacaaagagaatgatgctatattttccccattcaaacataaaaat
aaattgaaatttgactcctgtactagagaacactattacagtaaaaaagg
catctataagctacaatatcttactaaatttctctagatgaaagttcatg
caaatattggactttatgcatgtgtacagaaaatgcacatttgtatcttg
attgtaaagcaaataaaaaatactaaatatgttacttgacaaagaattca
ttagtctcagtgtagtacaatcaccaaataaagaaaaggcctatttaact
gtttagggaattcatggatgtagggtattgacactaaaatgttctggtac
acctactagtctttaaaatctatttctatttttattttaagtagaagaaa
ggcacatgcatttctattgttttgcagaacatatgaggagacattttagc
ttctcagaagcatcttcctgctgtctgtgtttgttcagtatcttccaaga
tatctaattttcagaatgaagatccaattaagattaatagctaaatagct
ttttttctcatttccttggggcacaatcatcatgaatagatgtttcatta
gtactgtatagaatatcatatcaaatttgtatttagatgttatatgttga
taaaaacaaaattaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_121056817_121057908
seq2: B6Ng01-044D04.b_44_1117 (reverse)

seq1  CATGTTTTCTACTAATACTTGCTTACACTTCCCTGATTGTTGCTTAGTTC  50
      ||||||||||||| |||| ||| ||||||  ||||||   ||| ||| ||
seq2  CATGTTTTCTACT-ATAC-TGC-TACACT--CCTGAT--GTGC-TAG-TC  41

seq1  CTTAAAATAATTTACACCTTGCTTTTCCTTCAAACTTTGCATAATAAACT  100
      || ||||||  ||||| ||||||||| | |||||||||||||||| ||||
seq2  CTAAAAATA--TTACAACTTGCTTTT-CGTCAAACTTTGCATAAT-AACT  87

seq1  ATTAGTAATTTGTGTGTTCTTTTCTTGCTTAGCCAGTGGACTACTTGGAA  150
      | |||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  A-TAGTAA-TTGTGTG-TCTTTTCTTGCTTAGCCAGTGGACTACTTGGAA  134

seq1  TACAATTTAAACACTTCTCATGGGAGAGCACTGCCCAGAATGTAGGAACG  200
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TACAATTTAAACACTTCTCATGGGAGAGCACTGCCCAG-ATGTAGGAACG  183

seq1  AGAGCAAGGAGAATGGTTAGAAATGATGGAGAAACTATAAGTTCAAATAA  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAA-GAGAATGGTTAGAAATGATGGAGAAACTATAAGTTCAAATAA  232

seq1  TCAGGTAAAAGTTGTGTATTTAATGGATATTTTTTCAACTAGGCACAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAAAAGTTGTGTATTTAATGGATATTTTTTCAACTAGGCACAAGC  282

seq1  TAGGGTCATCTAGGAAGAGAGGCTATCAAACTAGTGTTTAGGCAAGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTCATCTAGGAAGAGAGGCTATCAAACTAGTGTTTAGGCAAGCCAG  332

seq1  CAAGGTATTTTCTTTATCTACCGTTGATGTGGGAATTCCCAGCCCACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTATTTTCTTTATCTACCGTTGATGTGGGAATTCCCAGCCCACTGT  382

seq1  GAAAAATGCCATCCCAGGACTGGCAATTTTGGAAAAATATAATGACAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGCCATCCCAGGACTGGCAATTTTGGAAAAATATAATGACAGCT  432

seq1  GCTGACCATGAGCCAGAGTACAAGCCAGTAAATGACATCTCCTCCATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCATGAGCCAGAGTACAAGCCAGTAAATGACATCTCCTCCATGGT  482

seq1  TCCTGCCTCAAATCCTACCTCCAAGTTCTTCCTTGAGTTTCTGCCCTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTCAAATCCTACCTCCAAGTTCTTCCTTGAGTTTCTGCCCTGGC  532

seq1  TTTTCTTGATGATAGACTGTGATGTGGAACAGTAAACCAAACAAATCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGATGATAGACTGTGATGTGGAACAGTAAACCAAACAAATCCTT  582

seq1  TCCTCCCTCATGTTGTTTTTGATCAGTGTTTTATAACATATCTCATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTCATGTTGTTTTTGATCAGTGTTTTATAACATATCTCATATAT  632

seq1  ATAATCAAAGCAAAGTAGGACAAACTGGAATGAAGAAACTAGTAACAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAAAGCAAAGTAGGACAAACTGGAATGAAGAAACTAGTAACAACT  682

seq1  ATGTGTGTATCGCTAATGATGTTTACTGATATTGACTGTTTATCTATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTATCGCTAATGATGTTTACTGATATTGACTGTTTATCTATGTG  732

seq1  AAATAGTGTTGCTATAAAACTCCCTATCCTTACCATAGATTGGAAATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTGTTGCTATAAAACTCCCTATCCTTACCATAGATTGGAAATTTT  782

seq1  ACCAGCTAATTCATAGAAAATATTTTTTAAATGAACTATGATATGTACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTAATTCATAGAAAATATTTTTTAAATGAACTATGATATGTACTT  832

seq1  AGTTTTGGACTTGGTGGAAGGAGAATTGAAATCTCTGTAGGAATGTAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGGACTTGGTGGAAGGAGAATTGAAATCTCTGTAGGAATGTAAAT  882

seq1  AAAAGTACTTGAAGCGGCAAAAGACACCGTCAATAAGACAAAAAGACCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTACTTGAAGCGGCAAAAGACACCGTCAATAAGACAAAAAGACCAC  932

seq1  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGAGGACTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGAGGACTA  982

seq1  ATATACAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAA  1032

seq1  TAATCCCATTAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCATTAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1074

seq1: chr12_120921941_120923009
seq2: B6Ng01-044D04.g_68_1134

seq1  GAATTCATTTCAGCAGAATTCTAGGAAACATCGCTTACACACAGATTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCAGCAGAATTCTAGGAAACATCGCTTACACACAGATTCTG  50

seq1  AGCACCTAAAATAAAGTGATCAAGAGGAATCAGCGTCTGTGCTTTTACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTAAAATAAAGTGATCAAGAGGAATCAGCGTCTGTGCTTTTACAG  100

seq1  CAAGTCATGGTAGATACAGCTCTTCCCTTCCCTTAATAGGGTTACTAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCATGGTAGATACAGCTCTTCCCTTCCCTTAATAGGGTTACTAAGC  150

seq1  AGGCCATCAGAGAAATGTATTAAGCATGACGTATCTGGGTTCCAGCAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATCAGAGAAATGTATTAAGCATGACGTATCTGGGTTCCAGCAAGC  200

seq1  AATTAAACAAGATTTCTCATGATGTTCTTAAGGTCAAGAGAGAGGGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACAAGATTTCTCATGATGTTCTTAAGGTCAAGAGAGAGGGAATA  250

seq1  TGGCCAAGTACAACAGCAGTTAGGTGGAAAAGTTGCTGCTCAGATCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAAGTACAACAGCAGTTAGGTGGAAAAGTTGCTGCTCAGATCATTT  300

seq1  TTTCCCAAATGTTTTTAATTAATGTCAGCCTGCCCAGTGGATCCCAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAAATGTTTTTAATTAATGTCAGCCTGCCCAGTGGATCCCAGCCA  350

seq1  TGCAACAACCACTTTTCATTCCATGCCTATAGCTTAACATTCTGGTCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAACCACTTTTCATTCCATGCCTATAGCTTAACATTCTGGTCAAT  400

seq1  TATTGGACAAAGAGAATGATGCTATATTTTCCCCATTCAAACATAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGACAAAGAGAATGATGCTATATTTTCCCCATTCAAACATAAAAAT  450

seq1  AAATTGAAATTTGACTCCTGTACTAGAGAACACTATTACAGTAAAAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAATTTGACTCCTGTACTAGAGAACACTATTACAGTAAAAAAGG  500

seq1  CATCTATAAGCTACAATATCTTACTAAATTTCTCTAGATGAAAGTTCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATAAGCTACAATATCTTACTAAATTTCTCTAGATGAAAGTTCATG  550

seq1  CAAATATTGGACTTTATGCATGTGTACAGAAAATGCACATTTGTATCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTGGACTTTATGCATGTGTACAGAAAATGCACATTTGTATCTTG  600

seq1  ATTGTAAAGCAAATAAAAAATACTAAATATGTTACTTGACAAAGAATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAAGCAAATAAAAAATACTAAATATGTTACTTGACAAAGAATTCA  650

seq1  TTAGTCTCAGTGTAGTACAATCACCAAATAAAGAAAAGGCCTATTTAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTCAGTGTAGTACAATCACCAAATAAAGAAAAGGCCTATTTAACT  700

seq1  GTTTAGGGAATTCATGGATGTAGGGTATTGACACTAAAATGTTCTGGTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGGAATTCATGGATGTAGGGTATTGACACTAAAATGTTCTGGTAC  750

seq1  ACCTACTAGTCTTTAAAATCTATTTCTATTTTTATTTTAAGTAGAAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTAGTCTTTAAAATCTATTTCTATTTTTATTTTAAGTAGAAGAAA  800

seq1  GGCACATGCATTTCTATTGTTTTGCAGAACATATGAGGAGACATTTTAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATGCATTTCTATTGTTTTGCAGAACATATGAGGAGACATTTTAGC  850

seq1  TTCTCAGAAGCATCTTCCTGCTGTCTGTGTTTGTTCAGTATCTTCCAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGAAGCATCTTCCTGCTGTCTGTGTTTGTTCAGTATCTTCCAAGA  900

seq1  TATCTAATTTTCAGAATGAAGATCCAATTAAGATTAATAGCTAAATAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATCTAATTTTCAGAATGAAGATCCAATTAAGATTAATAGCTAAATAGC-  949

seq1  TTTTTTTCTCATTTTCCTTGGGGCACAATCATCATGAATAGATGTTTCAT  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTCA-TTTCCTTGGGGCACAATCATCATGAATAGATGTTTCAT  998

seq1  TAGTACTGTATAGAATATCATATCAAAATTTGTATTTTAGATGTAATATG  1050
      |||||||||||||||||||||||| ||||||||| ||||||||| |||||
seq2  TAGTACTGTATAGAATATCATATC-AAATTTGTA-TTTAGATGTTATATG  1046

seq1  -TGATAGAAACAAAA-TAATA  1069
       ||||| |||||||| |||||
seq2  TTGATAAAAACAAAATTAATA  1067