BAC Information

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BAC

Clone NameB6Ng01-044K21
Chromosome12 (Build37)
Map Location 120,521,511 - 120,639,857
singlet/doubletdoublet
Overlap geneLOC100043011
Upstream geneSp4, LOC100042993, LOC668611, EG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557
Downstream gene4732474O15Rik, LOC668632, LOC668633, Gm528, LOC100043017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044K21.bB6Ng01-044K21.g
ACCDH870364DH870365
length1,190204
definitionDH870364|Mus musculus domesticus DNA, BAC clone: B6Ng01-044K21, 5' end.DH870365|Mus musculus domesticus DNA, BAC clone: B6Ng01-044K21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,521,511 - 120,522,911)(120,639,654 - 120,639,857)
sequence
gaattctgtaaagtattgcattcctttctcatgtgatgctttctgtgctg
gtcaaataaacagagggaacctctttgttagggacagataccagacacac
aacacacacacaaacacacacacacacacataaatcatataacacacagc
aatacacacacagagatggaagacagagggagcatgaagtagatatttca
aatctggagtttttcttagttaaatgactcaagggaaaatgtctttcttt
ctttctttccttaatgtgacaccaatgtgttattcataactcagggtaaa
tcactaatgtgcttaattcacacagatcatgcgttcaaacttacggatca
tgacttggggaataatagaatacattgagcaaagttggcttcttttcatc
tgtgtatattatatacatgataagataactttatttgcttaatggagaac
agatgtcacaggtgaggaaagggtttgcaggtgtggtgctgcctcactat
gcttgtattgttgaggctatatataaagaaaaagaagatagtaaaggagc
ctcatcagagggatggctatggaaacaaagcagaagcagtagaaactgtt
ctatgaataatgtcaatgtccactaatgttattagcttcattattagatt
tagttatcagtgagttgtgagttgatttttttaataccagaaaaaaaagt
tttgtgaccagttttgtgttgtgataatggactgcacagatatcagaaag
gaacttaacaaaataaaactaaggcatttatagtaaggagaagaattgga
gcatcagattctatcttaacctttgagcagacacaagtagctctctgagg
ttacactcagggtgacatgacatttgtatcacatatgactacatgacatt
tcatcagcatcctacaaagagtgatggcatatgtgtagttcataaatttt
acatagtaaatattttctatacattaaataaatgaagtaaatcctcttaa
tcaagcttctgactcctgggttatgatgtagaataagtggtattctttct
ggaaagaaggccaagcagtatggaagaagcctacattcatctaagtaggg
gcatttttaaacggattatttttgatgcaatcatgaagaaatcacttttt
ttgtactaacattactgaactagaaaacatctccttgact
catcacaaggcagaggcaggtgtactctataaattcaaggccagcctgat
ctccatagtgagctctaggacagctagaactacatagagagaccctgtct
caaacaaaaaacaaagttgcctttggttctctattatggacctggctgat
gtttatcactgttaatgccactgttaatgtggtgtggtggttgttgtggt
ggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_120521511_120522911
seq2: B6Ng01-044K21.b_49_1238

seq1  GAATTCTGTAAAGTATTGCATTCCTTTCTCATGTGATGCTTTCTGTGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAAAGTATTGCATTCCTTTCTCATGTGATGCTTTCTGTGCTG  50

seq1  GTCAAATAAACAGAGGGAACCTCTTTGTTAGGGACAGATACCAGACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATAAACAGAGGGAACCTCTTTGTTAGGGACAGATACCAGACACAC  100

seq1  AACACACACACAAACACACACACACACACATAAATCATATAACACACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACACACAAACACACACACACACACATAAATCATATAACACACAGC  150

seq1  AATACACACACAGAGATGGAAGACAGAGGGAGCATGAAGTAGATATTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACACACAGAGATGGAAGACAGAGGGAGCATGAAGTAGATATTTCA  200

seq1  AATCTGGAGTTTTTCTTAGTTAAATGACTCAAGGGAAAATGTCTTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGAGTTTTTCTTAGTTAAATGACTCAAGGGAAAATGTCTTTCTTT  250

seq1  CTTTCTTTCCTTAATGTGACACCAATGTGTTATTCATAACTCAGGGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCCTTAATGTGACACCAATGTGTTATTCATAACTCAGGGTAAA  300

seq1  TCACTAATGTGCTTAATTCACACAGATCATGCGTTCAAACTTACGGATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAATGTGCTTAATTCACACAGATCATGCGTTCAAACTTACGGATCA  350

seq1  TGACTTGGGGAATAATAGAATACATTGAGCAAAGTTGGCTTCTTTTCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGGGGAATAATAGAATACATTGAGCAAAGTTGGCTTCTTTTCATC  400

seq1  TGTGTATATTATATACATGATAAGATAACTTTATTTGCTTAATGGAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATATTATATACATGATAAGATAACTTTATTTGCTTAATGGAGAAC  450

seq1  AGATGTCACAGGTGAGGAAAGGGTTTGCAGGTGTGGTGCTGCCTCACTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCACAGGTGAGGAAAGGGTTTGCAGGTGTGGTGCTGCCTCACTAT  500

seq1  GCTTGTATTGTTGAGGCTATATATAAAGAAAAAGAAGATAGTAAAGGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTATTGTTGAGGCTATATATAAAGAAAAAGAAGATAGTAAAGGAGC  550

seq1  CTCATCAGAGGGATGGCTATGGAAACAAAGCAGAAGCAGTAGAAACTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAGAGGGATGGCTATGGAAACAAAGCAGAAGCAGTAGAAACTGTT  600

seq1  CTATGAATAATGTCAATGTCCACTAATGTTATTAGCTTCATTATTAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAATAATGTCAATGTCCACTAATGTTATTAGCTTCATTATTAGATT  650

seq1  TAGTTATCAGTGAGTTGTGAGTTGATTTTTTTAATACCAGAAAAAAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATCAGTGAGTTGTGAGTTGATTTTTTTAATACCAGAAAAAAAAGT  700

seq1  TTTGTGACCAGTTTTGTGTTGTGATAATGGACTGCACAGATATCAGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGACCAGTTTTGTGTTGTGATAATGGACTGCACAGATATCAGAAAG  750

seq1  GAACTTAACAAAATAAAACTAAGGCATTTATAGTAAGGAGAAGAATTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTAACAAAATAAAACTAAGGCATTTATAGTAAGGAGAAGAATTGGA  800

seq1  GCATCAGATTCTATCTTAACCTTTGAGCAGGACACAAGTAGCTCTCTGAG  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCATCAGATTCTATCTTAACCTTTGAGCA-GACACAAGTAGCTCTCTGAG  849

seq1  GTTACACTCAGGGTGACATGACATTTGTATCACATATGACTACATGACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACTCAGGGTGACATGACATTTGTATCACATATGACTACATGACAT  899

seq1  TTCATCAGCATCCTACAAAGAGTGATGGCATATGTGTAGTTCATAAATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAGCATCCTACAAAGAGTGATGGCATATGTGTAGTTCATAAATTT  949

seq1  TACATAGTAAATATTTTCTATACATTAAATAAATGAAGTAATATCTCTTA  1000
      |||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  TACATAGTAAATATTTTCTATACATTAAATAAATGAAGTAAATCCTCTTA  999

seq1  ATCAAGC-TCTGACT-CTGGGTTATGATGTAGATAAAGTGGTATTCTTTC  1048
      ||||||| ||||||| |||||||||||||||||  |||||||||||||||
seq2  ATCAAGCTTCTGACTCCTGGGTTATGATGTAGAATAAGTGGTATTCTTTC  1049

seq1  ATGAAAAGAGGCAAAGCAGTAATGAAG-AGCCTACATTCATCTAAGTTAG  1097
        ||||  |||| ||||||||  |||| |||||||||||||||||| |||
seq2  TGGAAAGAAGGCCAAGCAGTATGGAAGAAGCCTACATTCATCTAAG-TAG  1098

seq1  TGGCATTTTTAAACAGTATTTATTTTTTGATGCAATCATG-AGAAATCAC  1146
       ||||||||||||| | |||   ||||||||||||||||| |||||||||
seq2  GGGCATTTTTAAAC-GGATT--ATTTTTGATGCAATCATGAAGAAATCAC  1145

seq1  -TTTTATGTACTAACATTACTGAACTTAGAAAACCATTTTTCTCTTTG--  1193
       |||| ||||||||||||||||||| ||||||||      |||| |||  
seq2  TTTTTTTGTACTAACATTACTGAAC-TAGAAAAC-----ATCTCCTTGAC  1189

seq1  TATCTCTGTACACACACACACACACACACACACACACACCGAGCAGGGAG  1243
      |                                                 
seq2  T-------------------------------------------------  1190

seq1  AGAGAGAGAAAGAGAGAGAAAGATCCAGATAACTATCAAACCTGTCCAAT  1293
                                                        
seq2  --------------------------------------------------  1190

seq1  CGAAAACTATGGAGGTAGAGCAACAAAACAGCTACAGAGGTGACTTTTTA  1343
                                                        
seq2  --------------------------------------------------  1190

seq1  ATCAAAGCAATGAAATGATTAATTTAAATACCATGGCTGATGTTGTCGAT  1393
                                                        
seq2  --------------------------------------------------  1190

seq1  CCTTGACT  1401
              
seq2  --------  1190

seq1: chr12_120639654_120639857
seq2: B6Ng01-044K21.g_73_276 (reverse)

seq1  CACCACCACAACAACCACCACACCACATTAACAGTGGCATTAACAGTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCACAACAACCACCACACCACATTAACAGTGGCATTAACAGTGAT  50

seq1  AAACATCAGCCAGGTCCATAATAGAGAACCAAAGGCAACTTTGTTTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCAGCCAGGTCCATAATAGAGAACCAAAGGCAACTTTGTTTTTTG  100

seq1  TTTGAGACAGGGTCTCTCTATGTAGTTCTAGCTGTCCTAGAGCTCACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGACAGGGTCTCTCTATGTAGTTCTAGCTGTCCTAGAGCTCACTAT  150

seq1  GGAGATCAGGCTGGCCTTGAATTTATAGAGTACACCTGCCTCTGCCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCAGGCTGGCCTTGAATTTATAGAGTACACCTGCCTCTGCCTTGT  200

seq1  GATG  204
      ||||
seq2  GATG  204