BAC Information

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BAC

Clone NameB6Ng01-045M16
Chromosome12 (Build37)
Map Location 57,561,960 - 57,690,811
singlet/doubletdoublet
Overlap geneE030019B13Rik, Titf1, LOC100039993
Upstream geneNfkbia, Aldoa-ps1, Insm2, Garnl1, Brms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837
Downstream geneNkx2-9, Pax9, Slc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045M16.bB6Ng01-045M16.g
ACCDH871145DH871146
length1,0381,025
definitionDH871145|Mus musculus domesticus DNA, BAC clone: B6Ng01-045M16, 5' end.DH871146|Mus musculus domesticus DNA, BAC clone: B6Ng01-045M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,689,768 - 57,690,811)(57,561,960 - 57,563,008)
sequence
gaattcaggtggggttgtgtaaagttgttttttttttaattcctgctaac
aaagcacctggaagtgccactgaatcctgctgaccacagtttgcattttc
atctgcttccttctccccacgttctccttattaaactcagttctgtgatt
gattttctgcatagccaggccactatgaatgacaatggtaagccacgaag
cacagcagtctggcccacttactgaagactgaatcctacctgcgacagaa
attctaggctcaaaaatagctaagctttgagagaagcaggcatatgagaa
ccttaacctttttctttaatagtataattcaaaagtccaagttcttcaag
tgcttcatacctagaccagtgactggagttcatgtagatgtctctataaa
aagagcaacatctgcccccctgcccccctgcccccaagctgctgctgaag
gctgtgtttgtgtctgtgtccctgcaacagcaatgatctgtgtctgtgtc
aatgtttatggcccatgttaccaccaaaagctatacagtcatccctggtc
tcggtcatgttgatgtcagagggcttcacagacctggccccacctctcac
tgactgcagcattcagacaagctggccccatccctcaactggacaaagtg
agagagctggcccggtggcacagcgtggtcacaggagagctgtcatgtca
accaattcagctaccaagcatgccaagatgcaggttctgagttggcccac
cctaacatccaccccatttatgaactgctggagcacatgaagggctggtc
ccgcaaaccaaagcggaaggatctccatgacacaggtcaacaacaagata
ttcaagaggagtccaggttaggatctagtataggattgggggtgcatgat
gtgaattctcaaggattcatgaaaagtttaaaaaaaagtgacttcccttc
cgagggatggtaatcttacaggagagcgattatctgtatttcataacaaa
gaccttgaaatgcattcatggcgttattttggaatatt
gaattcacagagatctgcctgtctctgcctccctgagattgaatgggagc
tcaccatttcactcagcaaagttctgtgaattttgaaggagcaatgagtg
actgaagtttggttatttattgtaaccttgatgaaatacctttttgaatc
tttggtttctctgggtgaccacaggtactagaaatgattgtcttcgttgc
ctacactcattattgaaagagccggggaatacaaagaaacaaatgttccc
actcaaatccagaggactcctaaactctagtgcacaagcccacaggccct
gacccctgatttaaccatctcttatgccccagccccaccccagtgaccaa
cagcctggcatttcagtcctagcagaaggggaaagaagagaaatgagcaa
tgggactcagctggtggcacctgtgcctgaactcagcacacaactctcac
tgtcctgagagccatgaagcacagatgtccttcaaaccttctcaagattt
tgcttcttctggtgtctctccttcagtaagatgtgaacatagtcaacacc
atggcacagggagggagggagggaattctgaacaaaaaaagcaaaggaga
acactcagcaaattgtgattcttgttattgcattaaaaaaaaatttagtt
acaagacatgtacaatttaatgaaggtaatctttcctgagggcagatggc
aaagtcaagatatgtctcttagctcatactttgttaactaaactcgccaa
acttaacagataacacaaatattgtactatatacttctgtgaaacccttt
tacttttttacttgtaacccaggtttaactagttctgtattatctgggaa
agcctaattatacaagatgcaagacaaatcattccaagtacaagacatac
tgagtgacagacaggacttgtatttagtgcaaatatttgagctactcgaa
gtagtagtagtccaatgcgagtgctcattttcagcaggggattttgagga
tcagtgagagtctttagggcagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_57689768_57690811
seq2: B6Ng01-045M16.b_44_1081 (reverse)

seq1  AATATTTCAAAATAACGCCATGACTGCATTTCAAGGTCTGTGGTTATTGA  50
      |||||| |||||||||||||||| ||||||||||||||| | |||| |||
seq2  AATATTCCAAAATAACGCCATGAATGCATTTCAAGGTCT-TTGTTA-TGA  48

seq1  AATACAGATAATCGCTTCTCCTTGTAAGA-TACCATCCCTCGGAAGGGAT  99
      ||||||||||||||| ||||| ||||||| ||||||||||||||||||| 
seq2  AATACAGATAATCGC-TCTCC-TGTAAGATTACCATCCCTCGGAAGGGAA  96

seq1  GTCACTTTTTTTTTAAACTTTTCATTGATTCTTTGTGAATTTCACATCAT  149
      ||||| |||||||||||||||||| ||| || ||| ||| ||||||||||
seq2  GTCAC-TTTTTTTTAAACTTTTCA-TGAATCCTTGAGAA-TTCACATCAT  143

seq1  GCA-CCCCAATCCTATACTAGATCCTTACCTGGACTCCTCTTGGATATCT  198
      ||| |||||||||||||||||||||| |||||||||||||||| ||||||
seq2  GCACCCCCAATCCTATACTAGATCCTAACCTGGACTCCTCTTGAATATCT  193

seq1  TGTTGTTGCCCTGTGTCATGGAGATCCTTCCGCTTTGGTTCTGCGGGACC  248
      |||||||| ||||||||||||||||||||||||||||||| |||||||||
seq2  TGTTGTTGACCTGTGTCATGGAGATCCTTCCGCTTTGGTT-TGCGGGACC  242

seq1  AGCCCTTCATGTGCTCCAGCAGTTCATAAATGGGGTGGATGTTAGGGTGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTCATGTGCTCCAGCAGTTCATAAATGGGGTGGATGTTAGGGTGG  292

seq1  GCCAACTCAGAACCTGCATCTTGGCCTGCTTGGTAGCTGAATTGGTTGAC  348
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCCAACTCAGAACCTGCATCTTGGCATGCTTGGTAGCTGAATTGGTTGAC  342

seq1  ATGACAGCTCTCCTGTGACCACGCTGTGCCACCGGGCCAGCTCTCTCACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGCTCTCCTGTGACCACGCTGTGCCACCGGGCCAGCTCTCTCACT  392

seq1  TTGTCCAGTTGAGGGATGGGGCCAGCTTGTCTGAATGCTGCAGTCAGTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCAGTTGAGGGATGGGGCCAGCTTGTCTGAATGCTGCAGTCAGTGA  442

seq1  GAGGTGGGGCCAGGTCTGTGAAGCCCTCTGACATCAACATGACCGAGACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGGGCCAGGTCTGTGAAGCCCTCTGACATCAACATGACCGAGACC  492

seq1  AGGGATGACTGTATAGCTTTTGGTGGTAACATGGGCCATAAACATTGACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGACTGTATAGCTTTTGGTGGTAACATGGGCCATAAACATTGACA  542

seq1  CAGACACAGATCATTGCTGTTGCAGGGACACAGACACAAACACAGCCTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACAGATCATTGCTGTTGCAGGGACACAGACACAAACACAGCCTTC  592

seq1  AGCAGCAGCTTGGGGGCAGGGGGGCAGGGGGGCAGATGTTGCTCTTTTTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGCTTGGGGGCAGGGGGGCAGGGGGGCAGATGTTGCTCTTTTTA  642

seq1  TAGAGACATCTACATGAACTCCAGTCACTGGTCTAGGTATGAAGCACTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACATCTACATGAACTCCAGTCACTGGTCTAGGTATGAAGCACTTG  692

seq1  AAGAACTTGGACTTTTGAATTATACTATTAAAGAAAAAGGTTAAGGTTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTTGGACTTTTGAATTATACTATTAAAGAAAAAGGTTAAGGTTCT  742

seq1  CATATGCCTGCTTCTCTCAAAGCTTAGCTATTTTTGAGCCTAGAATTTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCCTGCTTCTCTCAAAGCTTAGCTATTTTTGAGCCTAGAATTTCT  792

seq1  GTCGCAGGTAGGATTCAGTCTTCAGTAAGTGGGCCAGACTGCTGTGCTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCAGGTAGGATTCAGTCTTCAGTAAGTGGGCCAGACTGCTGTGCTTC  842

seq1  GTGGCTTACCATTGTCATTCATAGTGGCCTGGCTATGCAGAAAATCAATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTACCATTGTCATTCATAGTGGCCTGGCTATGCAGAAAATCAATC  892

seq1  ACAGAACTGAGTTTAATAAGGAGAACGTGGGGAGAAGGAAGCAGATGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACTGAGTTTAATAAGGAGAACGTGGGGAGAAGGAAGCAGATGAAA  942

seq1  ATGCAAACTGTGGTCAGCAGGATTCAGTGGCACTTCCAGGTGCTTTGTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAACTGTGGTCAGCAGGATTCAGTGGCACTTCCAGGTGCTTTGTTA  992

seq1  GCAGGAATTAAAAAAAAAACAACTTTACACAACCCCACCTGAATTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAATTAAAAAAAAAACAACTTTACACAACCCCACCTGAATTC  1038

seq1: chr12_57561960_57563008
seq2: B6Ng01-045M16.g_68_1092

seq1  GAATTCACAGAGATCTGCCTGTCTCTGCCTCCCTGAGATTGAATGGGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGATCTGCCTGTCTCTGCCTCCCTGAGATTGAATGGGAGC  50

seq1  TCACCATTTCACTCAGCAAAGTTCTGTGAATTTTGAAGGAGCAATGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATTTCACTCAGCAAAGTTCTGTGAATTTTGAAGGAGCAATGAGTG  100

seq1  ACTGAAGTTTGGTTATTTATTGTAACCTTGATGAAATACCTTTTTGAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGTTTGGTTATTTATTGTAACCTTGATGAAATACCTTTTTGAATC  150

seq1  TTTGGTTTCTCTGGGTGACCACAGGTACTAGAAATGATTGTCTTCGTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTCTCTGGGTGACCACAGGTACTAGAAATGATTGTCTTCGTTGC  200

seq1  CTACACTCATTATTGAAAGAGCCGGGGAATACAAAGAAACAAATGTTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTCATTATTGAAAGAGCCGGGGAATACAAAGAAACAAATGTTCCC  250

seq1  ACTCAAATCCAGAGGACTCCTAAACTCTAGTGCACAAGCCCACAGGCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAATCCAGAGGACTCCTAAACTCTAGTGCACAAGCCCACAGGCCCT  300

seq1  GACCCCTGATTTAACCATCTCTTATGCCCCAGCCCCACCCCAGTGACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCTGATTTAACCATCTCTTATGCCCCAGCCCCACCCCAGTGACCAA  350

seq1  CAGCCTGGCATTTCAGTCCTAGCAGAAGGGGAAAGAAGAGAAATGAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGCATTTCAGTCCTAGCAGAAGGGGAAAGAAGAGAAATGAGCAA  400

seq1  TGGGACTCAGCTGGTGGCACCTGTGCCTGAACTCAGCACACAACTCTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTCAGCTGGTGGCACCTGTGCCTGAACTCAGCACACAACTCTCAC  450

seq1  TGTCCTGAGAGCCATGAAGCACAGATGTCCTTCAAACCTTCTCAAGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGAGAGCCATGAAGCACAGATGTCCTTCAAACCTTCTCAAGATTT  500

seq1  TGCTTCTTCTGGTGTCTCTCCTTCAGTAAGATGTGAACATAGTCAACACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTCTGGTGTCTCTCCTTCAGTAAGATGTGAACATAGTCAACACC  550

seq1  ATGGCACAGGGAGGGAGGGAGGGAATTCTGAACAAAAAAAGCAAAGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACAGGGAGGGAGGGAGGGAATTCTGAACAAAAAAAGCAAAGGAGA  600

seq1  ACACTCAGCAAATTGTGATTCTTGTTATTGCATTAAAAAAAAATTTAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAGCAAATTGTGATTCTTGTTATTGCATTAAAAAAAAATTTAGTT  650

seq1  ACAAGACATGTACAATTTAATGAAGGTAATC-TTCCTGAGGGCAGATGGC  699
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACAAGACATGTACAATTTAATGAAGGTAATCTTTCCTGAGGGCAGATGGC  700

seq1  AAAGTCAAGATATGTCTCTTAGCTCATACTTTGTTAACTAAACTCGCCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAAGATATGTCTCTTAGCTCATACTTTGTTAACTAAACTCGCCAA  750

seq1  ACTTAACAGATAACACAAATATTGTACTATATACTTCTGTGAAAACCCTT  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACTTAACAGATAACACAAATATTGTACTATATACTTCTGTG-AAACCCTT  799

seq1  TTACTTTTTTACTTGTAACCCAGGTTTAACTAGTTCTGTATTTTATCT-G  848
      ||||||||||||||||||||||||||||||||||||||||  |||||| |
seq2  TTACTTTTTTACTTGTAACCCAGGTTTAACTAGTTCTGTA--TTATCTGG  847

seq1  GAAAGCCTAAATTAATACAAGATGCAAGACAAATCAATCCAAGTACAAGA  898
      ||||||||||  | |||||||||||||||||||||| |||||||||||||
seq2  GAAAGCCTAA--TTATACAAGATGCAAGACAAATCATTCCAAGTACAAGA  895

seq1  CATAACTGAGTGACAAGACAGGACTTGTATTTTAGTGCAAAAATAATTTG  948
      ||| |||||||||| |||||||||||||| |||||||||||    |||||
seq2  CAT-ACTGAGTGAC-AGACAGGACTTGTA-TTTAGTGCAAA---TATTTG  939

seq1  AGCTAAACTCAGAAGTAAGTAGTAAGTCCAAATGCAGAGTGGCTCATTTT  998
      ||||  |||| ||||| |||||| ||||| ||||| |||| |||||||||
seq2  AGCT--ACTC-GAAGT-AGTAGT-AGTCC-AATGC-GAGT-GCTCATTTT  981

seq1  CCAAGCCAGGGGGATTTTGAGGATTCAGTGAGAGTCTGTAGAGGGCAGAG  1048
      |  |||   |||||||||||||| ||||||||||||| |  |||||||||
seq2  C--AGC--AGGGGATTTTGAGGA-TCAGTGAGAGTCTTT--AGGGCAGAG  1024

seq1  G  1049
      |
seq2  G  1025