BAC Information

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BAC

Clone NameB6Ng01-045O03
Chromosome12 (Build37)
Map Location 81,922,734 - 82,059,267
singlet/doubletdoublet
Overlap gene4933426M11Rik, Sfrs5, Slc10a1
Upstream geneLOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1, Actn1, Wdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568
Downstream geneSmoc1, Slc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9, Pcnx
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045O03.bB6Ng01-045O03.g
ACCDH871210DH871211
length957421
definitionDH871210|Mus musculus domesticus DNA, BAC clone: B6Ng01-045O03, 5' end.DH871211|Mus musculus domesticus DNA, BAC clone: B6Ng01-045O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,922,734 - 81,923,700)(82,058,841 - 82,059,267)
sequence
gaattccttagccctgaaagggccttgggagccatccaggtccatcccta
agcactgggaagactgggtggcttgcccgaggacagaaccactgcctaat
gctgaagctggacctagctgtctactatcagctccctgctatagccaaga
ctgctgcggtcctagaggactgagaagactgaacgaggatatggtagtgt
gtcactggttggtattcctgcttgcctggatcttgggagaaagtatgatg
ccctgagtatatcaacagcagttcttctggagcagcacaggttgtaagga
gtagcaaagcaattcaagaaaatccctggcacattccagtaacttttagg
tggcttaagaggaaagctgagggtgatttttataattaggagcaggttaa
atttcaacaaaagttatttttacctaggagtggtggagcatagctataat
ctcagcatttgagaggttggttgcaaattcaagggcagcctggattacct
agccctccccttctctctcccttcccttcatctcccttctgcttccctgc
tctggcctgcagtgaaatgggtaaggtaatgttctgtcaaatgttcctta
aatcccaatagaagaaattgtggctgttgaagcactgaaataaatgttag
tggctcagaggaaatagaagttggtgactggaaatatccataggagaaag
aaatagagtgcatctacaaaacctcatattgtttataggggatggtagga
ggtcctaaggtttgaaggtgaatgagaggggaaaattctgcaattccttc
aaagatggtaagagtagcgaaggcctggatagcactttttgatttctcct
ctggagactttggacttcttgaatacatatggaatgtaatcggtgcttca
ttctgttcagcttaggaaatggctttgtcctttcctttagcagtgagagt
gtggttg
ctatttcctaccgagtctccccactcctgtgcccactcccaaccttctga
tggtctcttctgtccccatgtccaggcaggcatgatcatcactttctccc
tctctgtggctgtcacagtcctgtctgtcatcaatgtgggcaacagcatc
atgttcgtcatgacaccacacttactggctacctcctccctgatgccttt
cactggcttcctgatgggctacattctctctgctctcttccgactaaatc
caaggtaggtcttctaggtcccaatgtcctcagggtgtctcttaagtctt
tttagaaataaggaaccttgagataagggcagagcatttccaaagcatgt
gttcaaaggcaccaactgaccgagggctttgagcaatgagaaatacttgg
ggggctggggggggaggactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_81922734_81923700
seq2: B6Ng01-045O03.b_44_1000

seq1  GAATTCCTTAGCCCTGAAAGGGCCTTGGGAGCCATCCAGGTCCATCCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGCCCTGAAAGGGCCTTGGGAGCCATCCAGGTCCATCCCTA  50

seq1  AGCACTGGGAAGACTGGGTGGCTTGCCCGAGGACAGAACCACTGCCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGGAAGACTGGGTGGCTTGCCCGAGGACAGAACCACTGCCTAAT  100

seq1  GCTGAAGCTGGACCTAGCTGTCTACTATCAGCTCCCTGCTATAGCCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGCTGGACCTAGCTGTCTACTATCAGCTCCCTGCTATAGCCAAGA  150

seq1  CTGCTGCGGTCCTAGAGGACTGAGAAGACTGAACGAGGATATGGTAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCGGTCCTAGAGGACTGAGAAGACTGAACGAGGATATGGTAGTGT  200

seq1  GTCACTGGTTGGTATTCCTGCTTGCCTGGATCTTGGGAGAAAGTATGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGGTTGGTATTCCTGCTTGCCTGGATCTTGGGAGAAAGTATGATG  250

seq1  CCCTGAGTATATCAACAGCAGTTCTTCTGGAGCAGCACAGGTTGTAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGTATATCAACAGCAGTTCTTCTGGAGCAGCACAGGTTGTAAGGA  300

seq1  GTAGCAAAGCAATTCAAGAAAATCCCTGGCACATTCCAGTAACTTTTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAAGCAATTCAAGAAAATCCCTGGCACATTCCAGTAACTTTTAGG  350

seq1  TGGCTTAAGAGGAAAGCTGAGGGTGATTTTTATAATTAGGAGCAGGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAAGAGGAAAGCTGAGGGTGATTTTTATAATTAGGAGCAGGTTAA  400

seq1  ATTTCAACAAAAGTTATTTTTACCTAGGAGTGGTGGAGCATAGCTATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAACAAAAGTTATTTTTACCTAGGAGTGGTGGAGCATAGCTATAAT  450

seq1  CTCAGCATTTGAGAGGTTGGTTGCAAATTCAAGGGCAGCCTGGATTACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATTTGAGAGGTTGGTTGCAAATTCAAGGGCAGCCTGGATTACCT  500

seq1  AGCCCTCCCCTTCTCTCTCCCTTCCCTTCATCTCCCTTCTGCTTCCCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCCCCTTCTCTCTCCCTTCCCTTCATCTCCCTTCTGCTTCCCTGC  550

seq1  TCTGGCCTGCAGTGAAATGGGTAAGGTAATGTTCTGTCAAATGTTCCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCTGCAGTGAAATGGGTAAGGTAATGTTCTGTCAAATGTTCCTTA  600

seq1  AATCCCAATAGAAGAAATTGTGGCTGTTGAAGCACTGAAATAAATGTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAATAGAAGAAATTGTGGCTGTTGAAGCACTGAAATAAATGTTAG  650

seq1  TGGCTCAGAGGAAATAGAAGTTGGTGACTGGAAATATCCATAGGAGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGAGGAAATAGAAGTTGGTGACTGGAAATATCCATAGGAGAAAG  700

seq1  AAATAGAGTGCATCTACAAAACCTCATATTGTTTATAGGGGATGGTAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAGTGCATCTACAAAACCTCATATTGTTTATAGGGGATGGTAGGA  750

seq1  GGTCCTAAGGGTTTGAAGGTGAATGAGAGGGGAAAATTCTGCAATTCCTT  800
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTAA-GGTTTGAAGGTGAATGAGAGGGGAAAATTCTGCAATTCCTT  799

seq1  CAAAGATGGTAAGAGTTAGCGAAGGGCCTGGATAGTCACTTTTTGATATT  850
      ||||||||||||||| ||||||| ||||||||||| ||||||||||| ||
seq2  CAAAGATGGTAAGAG-TAGCGAA-GGCCTGGATAG-CACTTTTTGAT-TT  845

seq1  CTCCTCTGGAGACTTTGGACTTCTTGTAATTACATTATGAAATGTAATCA  900
      ||||||||||||||||||||||||||  | |||| |||| ||||||||| 
seq2  CTCCTCTGGAGACTTTGGACTTCTTG--AATACA-TATGGAATGTAATC-  891

seq1  GGTGCTTACATTCTGTTCATACTTTAGGAAATGGTCTTTGTCCTTTCCCT  950
      ||||||| ||||||||||  |  ||||||||||| ||||||||||||| |
seq2  GGTGCTT-CATTCTGTTC--AGCTTAGGAAATGG-CTTTGTCCTTTCCTT  937

seq1  TAGCAGTGAGAG---GGTTG  967
      ||||||||||||   |||||
seq2  TAGCAGTGAGAGTGTGGTTG  957

seq1: chr12_82058841_82059267
seq2: B6Ng01-045O03.g_68_494 (reverse)

seq1  AAGTCCTCCCCCCCCAGCCCCCCAAGTATTTCTCATTGCTCAAAGCCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTCCCCCCCCAGCCCCCCAAGTATTTCTCATTGCTCAAAGCCCTC  50

seq1  GGTCAGTTGGTGCCTTTGAACACATGCTTTGGAAATGCTCTGCCCTTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTTGGTGCCTTTGAACACATGCTTTGGAAATGCTCTGCCCTTATC  100

seq1  TCAAGGTTCCTTATTTCTAAAAAGACTTAAGAGACACCCTGAGGACATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTTCCTTATTTCTAAAAAGACTTAAGAGACACCCTGAGGACATTG  150

seq1  GGACCTAGAAGACCTACCTTGGATTTAGTCGGAAGAGAGCAGAGAGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTAGAAGACCTACCTTGGATTTAGTCGGAAGAGAGCAGAGAGAATG  200

seq1  TAGCCCATCAGGAAGCCAGTGAAAGGCATCAGGGAGGAGGTAGCCAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCATCAGGAAGCCAGTGAAAGGCATCAGGGAGGAGGTAGCCAGTAA  250

seq1  GTGTGGTGTCATGACGAACATGATGCTGTTGCCCACATTGATGACAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTGTCATGACGAACATGATGCTGTTGCCCACATTGATGACAGACA  300

seq1  GGACTGTGACAGCCACAGAGAGGGAGAAAGTGATGATCATGCCTGCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTGACAGCCACAGAGAGGGAGAAAGTGATGATCATGCCTGCCTGG  350

seq1  ACATGGGGACAGAAGAGACCATCAGAAGGTTGGGAGTGGGCACAGGAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGGACAGAAGAGACCATCAGAAGGTTGGGAGTGGGCACAGGAGTG  400

seq1  GGGAGACTCGGTAGGAAATAGGAATTC  427
      |||||||||||||||||||||||||||
seq2  GGGAGACTCGGTAGGAAATAGGAATTC  427