BAC Information

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BAC

Clone NameB6Ng01-046G21
Chromosome12 (Build37)
Map Location 33,334,891 - 33,458,831
singlet/doubletdoublet
Overlap genenone
Upstream geneDus4l, LOC100043081, Gpr22, Hbp1, Prkar2b, Pik3cg, 2010109K11Rik, LOC100043548
Downstream genePbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046G21.bB6Ng01-046G21.g
ACCDH871598DH871599
length7661,015
definitionDH871598|Mus musculus domesticus DNA, BAC clone: B6Ng01-046G21, 5' end.DH871599|Mus musculus domesticus DNA, BAC clone: B6Ng01-046G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,334,891 - 33,335,664)(33,457,785 - 33,458,831)
sequence
gaattctccttcaaatcctagaaataggcccctagggtcagggttcagtc
tctgtgtatcttgctggggcttccaaaatattactgggaagtcacaagaa
aggaccactcacatacaatttaaagccaattgaatctctttattccatct
ggatgggtctatgctcaggaattctatatctaagtgtagcaacaagtgtc
tagagaatggggtttttgaaggcagaaactcatcctagcatctgtctcag
cagctgctgggagagtttaatgtatacaagtagttttatagaggctaaga
taagcagttagcaggcagattaacagaacctaaaatagctggtgtatctt
gatgatgtctatctagaatagagttggataattttctatgaaattctcca
tcaagaagatcaaattctagttaaacttgaagtagcctcagcaagaatac
aagatgagggggatgtctctgcactgtcttgccctgtcatactatcaact
tctgtgcctttggctaaactatacaaaatctgagccttatacgtatctga
agaaaaaaaaaatggaggcaatgagaaacctggttttaaaggtgttttaa
gagggtgggtcaggagcaggcggggaaggtataggggacttttcagatag
catttgaaatgtaaatgaagaaaaatctaataaaaaaacctaaaaaataa
aaataaaagtgttaaaaagtattagtgacatacaaaaataactgtggtcc
atcgaaacatgaagtt
gaattcttccctatctggcacgtatctcagtcgtctttttgttgcttctt
catttgatacactggggtgatacctctcagcttgcacaattggcatcctc
agggtcacaaaccagtggcttttagaacaagtaggaaactttctggtgca
tcagccacaaatcataatgcaacaatctgtagctcctggaatgcaaaaga
aggaatgtagacctgcctaaaactggacatgaagccttggctgcactggt
cttcagcctgcatgcagccagccagaagggatagtttcagtggtgttgcc
ttctctcctttgagtgatactggagattgggacctcaagtgaaaaaaaaa
aaagactgagaagaccaccaaataacatcagaagagatatgcatgccaaa
ggatgcacacattgtaacttagaaacccaggtagcaaataaggtaacatg
actcctaaaatgtctacaggtactcaacaactaagttgaaagatactgaa
gtcattaatgtaggagaaagttttaaagtttagttttaaaagtgattaat
gacctcaaagaggattgaagatctgaataagaaaggcaacaatatggatg
agaaaagatacttaaaaaacggatagtctgaaacaaaagaacaaacagaa
aatagaaaggaaaaactgaataaattgatgaaagacatggtggacctcat
caccaatatactagactaaagggaagaaataatattagggtctaggggta
gatggcacagatggtcaagttcttttcacccaagcatctgagttggatcg
tcagcacccaaaaaagcaagatgtagtggcacatgcgtgtaactcagtac
tgagtgggtgaaacagcagactatgagtaatctacaaagctgtgtatagg
acttataagatgtctcagtgatgactgtaggtcagcatcagtatcatggg
aaagttaagctatgggagccacatagctctacagtgcttgggtcattaca
tcagcattcaaactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_33334891_33335664
seq2: B6Ng01-046G21.b_43_808

seq1  GAATTCTCCTTCAAATCCTAGAAATAGGCCCCTAGGGTCAGGGTTCAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTCAAATCCTAGAAATAGGCCCCTAGGGTCAGGGTTCAGTC  50

seq1  TCTGTGTATCTTGCTGGGGCTTCCAAAATATTACTGGGAAGTCACAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTATCTTGCTGGGGCTTCCAAAATATTACTGGGAAGTCACAAGAA  100

seq1  AGGACCACTCACATACAATTTAAAGCCAATTGAATCTCTTTATTCCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCACTCACATACAATTTAAAGCCAATTGAATCTCTTTATTCCATCT  150

seq1  GGATGGGTCTATGCTCAGGAATTCTATATCTAAGTGTAGCAACAAGTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGTCTATGCTCAGGAATTCTATATCTAAGTGTAGCAACAAGTGTC  200

seq1  TAGAGAATGGGGTTTTTGAAGGCAGAAACTCATCCTAGCATCTGTCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAATGGGGTTTTTGAAGGCAGAAACTCATCCTAGCATCTGTCTCAG  250

seq1  CAGCTGCTGGGAGAGTTTAATGTATACAAGTAGTTTTATAGAGGCTAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTGGGAGAGTTTAATGTATACAAGTAGTTTTATAGAGGCTAAGA  300

seq1  TAAGCAGTTAGCAGGCAGATTAACAGAACCTAAAATAGCTGGTGTATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGTTAGCAGGCAGATTAACAGAACCTAAAATAGCTGGTGTATCTT  350

seq1  GATGATGTCTATCTAGAATAGAGTTGGATAATTTTCTATGAAATTCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGTCTATCTAGAATAGAGTTGGATAATTTTCTATGAAATTCTCCA  400

seq1  TCAAGAAGATCAAATTCTAGTTAAACTTGAAGTAGCCTCAGCAAGAATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGATCAAATTCTAGTTAAACTTGAAGTAGCCTCAGCAAGAATAC  450

seq1  AAGATGAGGGGGATGTCTCTGCACTGTCTTGCCCTGTCATACTATCAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAGGGGGATGTCTCTGCACTGTCTTGCCCTGTCATACTATCAACT  500

seq1  TCTGTGCCTTTGGCTAAACTATACAAAATCTGAGCCTTATACGTATCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCCTTTGGCTAAACTATACAAAATCTGAGCCTTATACGTATCTGA  550

seq1  AGAAAAAAAAAATGGAGGCAATGAGAAACCTGGTTTTAAAGGTGTTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAAAATGGAGGCAATGAGAAACCTGGTTTTAAAGGTGTTTTAA  600

seq1  GAGGGTGGGTCAGGGAGCAGGGCGGGGAAGGGTATAGGGGACTTTCAGGA  650
      |||||||||||| |||||| ||||||||| |||||||||||||||   ||
seq2  GAGGGTGGGTCA-GGAGCA-GGCGGGGAA-GGTATAGGGGACTTTTCAGA  647

seq1  TAGCATTTGAAATGTAAATGAAGAAAATATCTAATAAAAAAACCTAAAAA  700
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  TAGCATTTGAAATGTAAATGAAGAAAA-ATCTAATAAAAAAACCT-AAAA  695

seq1  AATAAAAATAAAAGTGTTTTAAAAAGTATTTAGTGACATACAAAAAT-AC  749
      ||||||||||||||||  |||||||||| |||||||||||||||||| ||
seq2  AATAAAAATAAAAGTG--TTAAAAAGTA-TTAGTGACATACAAAAATAAC  742

seq1  TGTGGTCCATTGGAAACATGAAGTT  774
      ||||||||| | |||||||||||||
seq2  TGTGGTCCA-TCGAAACATGAAGTT  766

seq1: chr12_33457785_33458831
seq2: B6Ng01-046G21.g_65_1079 (reverse)

seq1  GAGTTTGGAGTGGCTGATGGTTATATGATACCCAAAGCACTGTTTAGAGC  50
      ||||||| |   |||||||  || ||||   || ||||||||  ||||||
seq2  GAGTTTGAA--TGCTGATG--TA-ATGA---CCCAAGCACTG--TAGAGC  40

seq1  TTATGGTTGGCTCCCATAGCTTTAACTTTCCCCATTGGATTACTGATGCT  100
       ||||  ||||||||||||| |||||||| |||||  || ||||||||||
seq2  -TATG--TGGCTCCCATAGC-TTAACTTT-CCCAT--GA-TACTGATGCT  82

seq1  GGCCCTACAAGTCGTCACTGGGAACCCTTCTTATAAAGTCCCTAATGGCA  150
       | ||||| |||| |||||| ||   | |||||| ||||||   |   ||
seq2  -GACCTAC-AGTCATCACTGAGA---CATCTTAT-AAGTCCTATA---CA  123

seq1  CAGCTTTTGTAGATTTACTCATAGTCTGCCTGTTTCCACCCACTCAGTAC  200
      |||| |||||||| |||||||||||||| |||||| ||||||||||||||
seq2  CAGC-TTTGTAGA-TTACTCATAGTCTG-CTGTTT-CACCCACTCAGTAC  169

seq1  TGGAGTTACACGCATGTGCCACTACATCCTGCTTTTTTGGGTGCTGGCGA  250
      | |||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  T-GAGTTACACGCATGTGCCACTACATCTTGCTTTTTTGGGTGCTGACGA  218

seq1  TCCAACCTCAGATGCTTGGGTGAAAAGAACTTGACCATCTGTGCCATCTA  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAA-CTCAGATGCTTGGGTGAAAAGAACTTGACCATCTGTGCCATCTA  267

seq1  CCCCTAGACCCTAATATTATTTCTTCCCTTTAGTCTAGTATATTGGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAGACCCTAATATTATTTCTTCCCTTTAGTCTAGTATATTGGTGAT  317

seq1  GAGGTCCACCATGTCTTTCATCAATTTATTCAGTTTTTCCTTTCTATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCACCATGTCTTTCATCAATTTATTCAGTTTTTCCTTTCTATTTT  367

seq1  CTGTTTGTTCTTTTGTTTCAGACTATCCGTTTTTTAAGTATC-TTTCTCA  449
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGTTTGTTCTTTTGTTTCAGACTATCCGTTTTTTAAGTATCTTTTCTCA  417

seq1  TCCATATTGTTGCCTTTCTTATTCAGATCTTCAATCCTCTTTGAGGTCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATTGTTGCCTTTCTTATTCAGATCTTCAATCCTCTTTGAGGTCAT  467

seq1  TAATCACTTTTAAAACTAAACTTTAAAACTTTCTCCTACATTAATGACTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACTTTTAAAACTAAACTTTAAAACTTTCTCCTACATTAATGACTT  517

seq1  CAGTATCTTTCAACTTAGTTGTTGAGTACCTGTAGACATTTTAGGAGTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCTTTCAACTTAGTTGTTGAGTACCTGTAGACATTTTAGGAGTCA  567

seq1  TGTTACCTTATTTGCTACCTGGGTTTCTAAGTTACAATGTGTGCATCCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCTTATTTGCTACCTGGGTTTCTAAGTTACAATGTGTGCATCCTT  617

seq1  TGGCATGCATATCTCTTCTGATGTTATTTGGTGGTCTTCTCAGTCTTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGCATATCTCTTCTGATGTTATTTGGTGGTCTTCTCAGTCTTTTT  667

seq1  TTTTTTTCACTTGAGGTCCCAATCTCCAGTATCACTCAAAGGAGAGAAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCACTTGAGGTCCCAATCTCCAGTATCACTCAAAGGAGAGAAGG  717

seq1  CAACACCACTGAAACTATCCCTTCTGGCTGGCTGCATGCAGGCTGAAGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCACTGAAACTATCCCTTCTGGCTGGCTGCATGCAGGCTGAAGAC  767

seq1  CAGTGCAGCCAAGGCTTCATGTCCAGTTTTAGGCAGGTCTACATTCCTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGCCAAGGCTTCATGTCCAGTTTTAGGCAGGTCTACATTCCTTC  817

seq1  TTTTGCATTCCAGGAGCTACAGATTGTTGCATTATGATTTGTGGCTGATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCATTCCAGGAGCTACAGATTGTTGCATTATGATTTGTGGCTGATG  867

seq1  CACCAGAAAGTTTCCTACTTGTTCTAAAAGCCACTGGTTTGTGACCCTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAAAGTTTCCTACTTGTTCTAAAAGCCACTGGTTTGTGACCCTGA  917

seq1  GGATGCCAATTGTGCAAGCTGAGAGGTATCACCCCAGTGTATCAAATGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCAATTGTGCAAGCTGAGAGGTATCACCCCAGTGTATCAAATGAA  967

seq1  GAAGCAACAAAAAGACGACTGAGATACGTGCCAGATAGGGAAGAATTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAACAAAAAGACGACTGAGATACGTGCCAGATAGGGAAGAATTC  1015