BAC Information

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BAC

Clone NameB6Ng01-046L20
Chromosome12 (Build37)
Map Location 32,631,616 - 32,631,843
singlet/doubletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046L20.bB6Ng01-046L20.g
ACCDH871810DH871811
length1,273945
definitionDH871810|Mus musculus domesticus DNA, BAC clone: B6Ng01-046L20, 5' end.DH871811|Mus musculus domesticus DNA, BAC clone: B6Ng01-046L20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtaacccattttttaatagggttatttggtt
ttctggagtccaacttcttgagttctttatatatattggatattagttcc
ctatcagatttaggattagtaaagatcttttcctaatctgttggttgcct
tttggtcttattgacagtgtccattgccttacagaagctctacaatttta
tgaatcaatttgttgattcttgattttacagcacaagccattggtgttct
gctcaagaatcctgtgcccatatcttcaaagcttttccccactttctcct
ctataaatttcagtgtctcaggttttatgtagagttctttgatccactta
gattggagctttgtacaaggagataagaatggatcaatttgcattcttct
acatgctacttgccagttgagccaacaccatttgctaaagatgctgtctc
ctttccactagatggttttagctcctttgtcaaagatcaagtgaccatag
gtgtgtgggttcatttctgggtcttcaattctgttccattgatctacctg
tctgtcattgtaccagtaccatgacgtttttatcacaattgctctggtgg
aactgcaagctggtacaaccactctggaactcagtttggtggttcctcag
aaaattggatatagttatactagaagatccagcaataccactcctgggca
tatacccagaagatgctccaatatgtaataaggacacatgctccactatg
ttcatagcagccttatttataatagccagaagctagaaagaacccagatg
tccctcaacagaggaatggatacagaaaatgtggtacatttacacaatgg
agtactactcagctattaaaacaatgagtttaagaaatcttagacaaata
gatagatctggaggatatcatcttgagtgagtgtactggctagttttgtg
acaacttgacccagctggagtatcacagagaaagagcttcaattgaggaa
atgcctccatgaaatccactgtaagcattttttcaataagtggatcaagg
gaaaggctctgtggggggggaaccatctcttgtgctggggagtcttggtt
ctaaaaaagacagccggagcagtgagagaaagcagccataagaacgttct
ccatagcttctgctagtctggttcttgaacctctgaattcgactctcgca
ctcctggatgaagaacatggaagtgtactgaataactttctccactatgc
tctggctctgagtgttgtgcggc
gaattcagtctggcggttcctcagaaaattggacattagtactactggag
gatcctgcaatacctctcctagacatatatccagaagatattccaaccgg
taagaaggacacatgctccactatgttcatagcagccttatttataatac
ccagaagctggaaagaacctagatgcccctcaacagaggaatggatacag
aaaatgtggtacatttacacaatggagtactactcagctattaaaaaaat
gaatttatgaaattcctaggcaaatggatggacctggagggcatcatcct
gagtgaggtaacccaatcacaaaagaactcgcacaatatgtactcactga
taagtggatattagcccagaaatttagaatacccaagacataagatacaa
tttgctaaacgcatgaaactcaagaagaacgaagaccaaagtgtggacag
gttgcctcttcttagaattgggaacaaaacactcatggaaggagttacag
agacaaaatttggagctgagatgaaaggatggaccatctagagactgcca
tatctgggaatccatcccataatcagcttctaaatgctgacaccattgca
tacactagcaagattttgctgaaaggacccggatatggctgtctcttgtg
agactatgccggggcctggcaaatacagaagtggatgctcacagtcagct
atttcatggatcacagggcccccaatggaggagctagagaaagtacccaa
ggagctgaagggatgtgcaatcctataggtggaacaacagtatgaactaa
acaaccctccccgctcccccccctcccggagctcgtgtctctagctgcat
atgaatcagagatggcctagtcagccatcagtggaaagagaggctcattc
gtagtgcaaactttatatgcctagtacagggccaagaagtgggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631843
seq2: B6Ng01-046L20.g_734_1010 (reverse)

seq1  CTCCCACTTCTTGGCCCTG-------------------GCAAGACCCATG  31
      |||||||||||||||||||                   |||  ||  |||
seq2  CTCCCACTTCTTGGCCCTGTACTAGGCATATAAAGTTTGCACTACGAATG  50

seq1  GGCCTCTCTTTCCA-------CTGACT--------TCTGATACATACGCA  66
       |||||||||||||       ||||||        |||||| |||| |||
seq2  AGCCTCTCTTTCCACTGATGGCTGACTAGGCCATCTCTGATTCATATGCA  100

seq1  GCTAGAGACACGAGCTCCGG-------------GGGTA---CTGGTCAGT  100
      ||||||||||||||||||||             ||| |    || | |||
seq2  GCTAGAGACACGAGCTCCGGGAGGGGGGGGAGCGGGGAGGGTTGTTTAGT  150

seq1  TCATAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGG  150
      ||||| |||||||||||||||||| ||||| | ||||| |||||||||||
seq2  TCATACTGTTGTTCCACCTATAGGATTGCACATCCCTTCAGCTCCTTGGG  200

seq1  TACTTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCT  200
      ||||||||||| |||||||||||||| ||||||||||| ||  |||||||
seq2  TACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCC-ATGAAATAGCT  249

seq1  GACTGTGAGCATCCACTTCTGTGTTTGC  228
      |||||||||||||||||||||| |||||
seq2  GACTGTGAGCATCCACTTCTGTATTTGC  277