BAC Information

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BAC

Clone NameB6Ng01-048G24
Chromosome12 (Build37)
Map Location 113,292,341 - 113,422,842
singlet/doubletdoublet
Overlap geneTdrd9, A530050D06Rik, Kif26a
Upstream geneRcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943
Downstream geneA730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048G24.bB6Ng01-048G24.g
ACCDH872997DH872998
length1,065441
definitionDH872997|Mus musculus domesticus DNA, BAC clone: B6Ng01-048G24, 5' end.DH872998|Mus musculus domesticus DNA, BAC clone: B6Ng01-048G24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,292,341 - 113,293,216)(113,422,417 - 113,422,842)
sequence
gaattcagtgtccagttatctggggttcactcgaaatcttctggacttct
ccaaggagcttggctggcttcaccagctctgccctctacagcacacgcag
cttgtcttctgggctccagtggctccactccactgctgctcttgggatca
cccattctactgacatctgcaaaatgctggggtcttctcctacaactggg
ttgtgtcttccccagtggcctctcctgacctcagcagcaccaagcctcag
ctgttctccatgatctctccatgttctcaaaaccagctccatattgggac
gtttacactactgagttcagctgtagcacaaggtacaactttggtcataa
ctggaacgcagcttctgtatgctgactttcagaaaacacttcccaaaaga
ttccacctcggtgatgctgggctcttctcagtcactactaatttcttagc
tccagcttccctgcaccagctgcccagcatcagctgtcccagtaatgtgt
ttcccttcactgttgcctcttatgattgtggctgactttcagcccccctg
accagaatgaattaataatctcaattcagaatagcaaatggctctgatag
tcgttgaattccattttgttttgttttggtttttcggttttctcaagata
gggtttctctgtgtagccagctgaattccattttgaaacttcacaagcca
aggctctatcctttgcacacagccaggccttcatcctatgtactgttctc
aacattcttttttttttttttttttccatttttattaggtatttcgctca
tttacatttgaaatgctaataccaaaagtcccccattagccacccacccc
ctcttccctacccacccattccccttttatgggcctggcgttcccctgta
ctggggcatataaagtttgcgtgtcatgggctctctttccagtgatggcc
gactaggccatctttgatgcatatgcagctagagtcaagtacctccgggg
tactggtttattctaatgttgttcaccataaggttgcagttcctttagct
ctttgggactttctc
cttcccagctcctcccagcctccagggcttcctgtgtggaaacagcctga
atcctgccttgctaaacacaatatcaggagggagagggcgccctgtgagc
ttcctgtttgcaggcagcagatcccagggcctggccccagtgctcctggc
ccaggaatggagcagccaatccagaggggtggaaggaagagtgtcttcac
cccagttcaggaatgtaggggttctcctggaaggatatggctatgacaca
gggccttgcagttccccgggggactgtgaggtagacctcctaaagctgag
gccacttccagagagctcaaagcattgtgagtccacggcgtctccttctg
actcaacttagttcttggagaagggatctctctctctctctctctctctc
tctctctctctctctctctcgcgcgcgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_113292341_113293216
seq2: B6Ng01-048G24.b_240_1107

seq1  GGGTTGTGTCTTCCCCAGTGGCCTCTCCTGACCTCAGCAGCACCAAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTGTCTTCCCCAGTGGCCTCTCCTGACCTCAGCAGCACCAAGCCT  50

seq1  CAGCTGTTCTCCATGATCTCTCCATGTTCTCAAAACCAGCTCCATATTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTTCTCCATGATCTCTCCATGTTCTCAAAACCAGCTCCATATTGG  100

seq1  GACGTTTACACTACTGAGTTCAGCTGTAGCACAAGGTACAACTTTGGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTTTACACTACTGAGTTCAGCTGTAGCACAAGGTACAACTTTGGTCA  150

seq1  TAACTGGAACGCAGCTTCTGTATGCTGACTTTCAGAAAACACTTCCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGAACGCAGCTTCTGTATGCTGACTTTCAGAAAACACTTCCCAAA  200

seq1  AGATTCCACCTCGGTGATGCTGGGCTCTTCTCAGTCACTACTAATTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCACCTCGGTGATGCTGGGCTCTTCTCAGTCACTACTAATTTCTT  250

seq1  AGCTCCAGCTTCCCTGCACCAGCTGCCCAGCATCAGCTGTCCCAGTAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGCTTCCCTGCACCAGCTGCCCAGCATCAGCTGTCCCAGTAATG  300

seq1  TGTTTCCCTTCACTGTTGCCTCTTATGATTGTGGCTGACTTTCAGCCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCCTTCACTGTTGCCTCTTATGATTGTGGCTGACTTTCAGCCCCC  350

seq1  CTGACCAGAATGAATTAATAATCTCAATTCAGAATAGCAAATGGCTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAGAATGAATTAATAATCTCAATTCAGAATAGCAAATGGCTCTGA  400

seq1  TAGTCGTTGAATTCCATTTTGTTTTGTTTTGGTTTTTCGGTTTTCTCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCGTTGAATTCCATTTTGTTTTGTTTTGGTTTTTCGGTTTTCTCAAG  450

seq1  ATAGGGTTTCTCTGTGTAGCCAGCTGAATTCCATTTTGAAACTTCACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTTTCTCTGTGTAGCCAGCTGAATTCCATTTTGAAACTTCACAAG  500

seq1  CCAAGGCTCTATCCTTTGCACACAAGCCAGGCCTTCATCCTATGTACTGT  550
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCAAGGCTCTATCCTTTGCACAC-AGCCAGGCCTTCATCCTATGTACTGT  549

seq1  TCTCAACATTCTTTTTTTTTTTTTTTTTTCCATTTTTTATTAGGTATTTC  600
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTCAACATTCTTTTTTTTTTTTTTTTTTCCA-TTTTTATTAGGTATTTC  598

seq1  GCTCATTTACATTTGAAATGCT-ATACCAAAAGTCCCCCA-TAGCCACCC  648
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  GCTCATTTACATTTGAAATGCTAATACCAAAAGTCCCCCATTAGCCACCC  648

seq1  ACCCCCTCTCCCCTACCCACCCACTCCCCTTTTATGGCCCTGGCGTTCCC  698
      ||||||||| ||||||||||||| ||||||||||||| ||||||||||||
seq2  ACCCCCTCTTCCCTACCCACCCATTCCCCTTTTATGGGCCTGGCGTTCCC  698

seq1  CTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAG  748
      ||||||||||||||||||||||||||||||  ||||| ||||||||||||
seq2  CTGTACTGGGGCATATAAAGTTTGCGTGTC--ATGGG-CTCTCTTTCCAG  745

seq1  TGATGGCCGACTAGGCCATCTTTTGATGCATATGCAGCTAGAGTCAAG-A  797
      |||||||||||||||||||| ||||||||||||||||||||||||||| |
seq2  TGATGGCCGACTAGGCCATC-TTTGATGCATATGCAGCTAGAGTCAAGTA  794

seq1  GCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCA  847
       ||||||||||||||||  ||| |||||||||| |||| ||| |||||||
seq2  CCTCCGGGGTACTGGTTTATTC-TAATGTTGTT-CACC-ATAAGGTTGCA  841

seq1  GATCCCTTTAGCTTCTTTGGTACTTTCTC  876
      | | |||||||| ||||||| ||||||||
seq2  G-TTCCTTTAGC-TCTTTGGGACTTTCTC  868

seq1: chr12_113422417_113422842
seq2: B6Ng01-048G24.g_67_492 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCCCTT  50

seq1  CTCCAAGAACTAAGTTGAGTCAGAAGGAGACGCCGTGGACTCACAATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGAACTAAGTTGAGTCAGAAGGAGACGCCGTGGACTCACAATGCT  100

seq1  TTGAGCTCTCTGGAAGTGGCCTCAGCTTTAGGAGGTCTACCTCACAGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTCTCTGGAAGTGGCCTCAGCTTTAGGAGGTCTACCTCACAGTCC  150

seq1  CCCGGGGAACTGCAAGGCCCTGTGTCATAGCCATATCCTTCCAGGAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGGAACTGCAAGGCCCTGTGTCATAGCCATATCCTTCCAGGAGAAC  200

seq1  CCCTACATTCCTGAACTGGGGTGAAGACACTCTTCCTTCCACCCCTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACATTCCTGAACTGGGGTGAAGACACTCTTCCTTCCACCCCTCTGG  250

seq1  ATTGGCTGCTCCATTCCTGGGCCAGGAGCACTGGGGCCAGGCCCTGGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTGCTCCATTCCTGGGCCAGGAGCACTGGGGCCAGGCCCTGGGAT  300

seq1  CTGCTGCCTGCAAACAGGAAGCTCACAGGGCGCCCTCTCCCTCCTGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCCTGCAAACAGGAAGCTCACAGGGCGCCCTCTCCCTCCTGATAT  350

seq1  TGTGTTTAGCAAGGCAGGATTCAGGCTGTTTCCACACAGGAAGCCCTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTAGCAAGGCAGGATTCAGGCTGTTTCCACACAGGAAGCCCTGGA  400

seq1  GGCTGGGAGGAGCTGGGAAGGAATTC  426
      ||||||||||||||||||||||||||
seq2  GGCTGGGAGGAGCTGGGAAGGAATTC  426