BAC Information

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BAC

Clone NameB6Ng01-050F20
Chromosome12 (Build37)
Map Location 46,658,311 - 46,659,478
singlet/doubletsinglet
Overlap genenone
Upstream geneNrcam, EG620025, Stxbp6
Downstream geneLOC664952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050F20.bB6Ng01-050F20.g
ACCDH874332DH874333
length1,126693
definitionDH874332|Mus musculus domesticus DNA, BAC clone: B6Ng01-050F20, 5' end.DH874333|Mus musculus domesticus DNA, BAC clone: B6Ng01-050F20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgaagataaagacattttcatgtctaagaaagcatagctattga
taaccccaaatcaacaggcatcttcagcaattaaagagcttgcaggcagt
cagcctgaagaaatctgcccactcatggaagcattcacctgagctgaact
agggatacaggcagaacttcagacggtggttacggaagaaatcaagaaat
tagctgaaggctaatttcttttcagtaatacgcatgttatgtaatgatta
aatcaagcttatctgcacatctaccaccttagacatcatcatttctacgt
gatatccttttccaaatcctcccttataaccattttgaggtatacagtac
aatagtgttaactttaatcacactactcatatctagatagctgactacag
ggacatgttcctgagattccaggatggtaaggccattccttgaaactcat
cctagcaatgtagcaagactttgtttcaaaacctactaagaaaatgctat
attcttatctattaaaaggaatgaaattacatccccagccaaaacactca
tggatgtagagccatggtgttaaggaaattaaactaggtacagaaatact
aacctgatctgacttacataaaatctcaaagagttaagtgctaatttaaa
aggctctatagagttggctgattagctgattagacacctaaaataataca
ctgagaacttttctccaaagtctgtaataccttgaacagggatgagttcc
agggatgaattgcctcttacttttcctaaagcaagtccagaaccgataga
aaatgaagtgtgtgggaattgattcttctaaatccagaagttacagatta
atatgaaaattgtctgacagagagatgacagccagagagcagacagtgcc
tgcacttggccacctaattcttatgtgcagtactttcctgatcacctgtc
ctcactatattaataaaatcacatgaccaataagcttaaacatgcccaca
ggataattagtttgcagaatttgtttgaatcacttgcaaattgtttagct
ggcatcacagacagtgctgcaggctacctctctgagttcagttgtgaacc
tggctgccctgaggcattcatttttc

gaattctctgtttatctctgttccccattttttaataaggttatttggtt
ctctggatgaaacccaagaggaaggaagaccaaaatgtgaatgtttcagt
gctttttagaagagtgaacaaaactcagaaggaaatatggagacaaagag
tagagcagagaaggaaggaaaggtcatccagggactagcccaccagggga
tccatcccatatatagccaccaaaccctgactttattgtggatgccaaga
agtgtttgctgatggaagcctgatatggctgtctcctgagaggctctgat
agagcctgacaaagtcagaggcagatgcttgcaggcaacctttgaactga
tcttagggggtccctgatggaggagttggagaagggactgaaggagctga
gggggggttgcaaccccatggatggagcaacaatgtcaacagaccggacc
cccatcccgagctcccaggaactgcaccaccacccaaagaatacacatgg
agccacccgtagcgctggctgcatatgtgacagaggatggccttgttgga
catcagtgggaggagaggatcttgggcctgagggtgttcaatgtcccagt
gtagggaatgccagggcaggaggacaggagtgggagggtctgtgggggca
caccctcatagatgcaggagaaagggatgatgggatggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_46658311_46659478
seq2: B6Ng01-050F20.b_45_1170

seq1  GAATTCTGAAGATAAAGACATTTTCATGTCTAAGAAAGCATAGCTATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAGATAAAGACATTTTCATGTCTAAGAAAGCATAGCTATTGA  50

seq1  TAACCCCAAATCAACAGGCATCTTCAGCAATTAAAGAGCTTGCAGGCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCCAAATCAACAGGCATCTTCAGCAATTAAAGAGCTTGCAGGCAGT  100

seq1  CAGCCTGAAGAAATCTGCCCACTCATGGAAGCATTCACCTGAGCTGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGAAGAAATCTGCCCACTCATGGAAGCATTCACCTGAGCTGAACT  150

seq1  AGGGATACAGGCAGAACTTCAGACGGTGGTTACGGAAGAAATCAAGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATACAGGCAGAACTTCAGACGGTGGTTACGGAAGAAATCAAGAAAT  200

seq1  TAGCTGAAGGCTAATTTCTTTTCAGTAATACGCATGTTATGTAATGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAAGGCTAATTTCTTTTCAGTAATACGCATGTTATGTAATGATTA  250

seq1  AATCAAGCTTATCTGCACATCTACCACCTTAGACATCATCATTTCTACGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGCTTATCTGCACATCTACCACCTTAGACATCATCATTTCTACGT  300

seq1  GATATCCTTTTCCAAATCCTCCCTTATAACCATTTTGAGGTATACAGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCCTTTTCCAAATCCTCCCTTATAACCATTTTGAGGTATACAGTAC  350

seq1  AATAGTGTTAACTTTAATCACACTACTCATATCTAGATAGCTGACTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGTTAACTTTAATCACACTACTCATATCTAGATAGCTGACTACAG  400

seq1  GGACATGTTCCTGAGATTCCAGGATGGTAAGGCCATTCCTTGAAACTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGTTCCTGAGATTCCAGGATGGTAAGGCCATTCCTTGAAACTCAT  450

seq1  CCTAGCAATGTAGCAAGACTTTGTTTCAAAACCTACTAAGAAAATGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCAATGTAGCAAGACTTTGTTTCAAAACCTACTAAGAAAATGCTAT  500

seq1  ATTCTTATCTATTAAAAGGAATGAAATTACATCCCCAGCCAAAACACTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTATCTATTAAAAGGAATGAAATTACATCCCCAGCCAAAACACTCA  550

seq1  TGGATGTAGAGCCATGGTGTTAAGGAAATTAAACTAGGTACAGAAATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTAGAGCCATGGTGTTAAGGAAATTAAACTAGGTACAGAAATACT  600

seq1  AACCTGATCTGACTTACATAAAATCTCAAAGAGTTAAGTGCTAATTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGATCTGACTTACATAAAATCTCAAAGAGTTAAGTGCTAATTTAAA  650

seq1  AGGCTCTATAGAGTTGGCTGATTAGCTGATTAGACACCTAAAATAATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTATAGAGTTGGCTGATTAGCTGATTAGACACCTAAAATAATACA  700

seq1  CTGAGAACTTTTCTCCAAAGTCTGTAATACCTTGAACAGGGATGAGTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACTTTTCTCCAAAGTCTGTAATACCTTGAACAGGGATGAGTTCC  750

seq1  AGGGATGAATTGCCTCTTACTTTTCCTAAAGCAAGTCCAGAACCGATAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGAATTGCCTCTTACTTTTCCTAAAGCAAGTCCAGAACCGATAGA  800

seq1  AAATGAAGTGTGTGGGAATTGATTCTTCTAAAATCCAGAAGTTACAAGAT  850
      ||||||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  AAATGAAGTGTGTGGGAATTGATTCTTCT-AAATCCAGAAGTTAC-AGAT  848

seq1  TAATATGAAAAATTGTCTGACAGAAGAAGAATGACAGCCAGAGAGCAGAC  900
      ||||||| ||||||||||||||| |||   ||||||||||||||||||||
seq2  TAATATG-AAAATTGTCTGACAG-AGA--GATGACAGCCAGAGAGCAGAC  894

seq1  AGTGCCTGGCACTTGGCCCACCTAATTCTTTATTGTGCAGTACTTTCCTG  950
      ||||||| |||||||| |||||||||||||   |||||||||||||||||
seq2  AGTGCCT-GCACTTGG-CCACCTAATTCTT--ATGTGCAGTACTTTCCTG  940

seq1  ATCACCTGTCCTCAACTATATTTAAATAAAATTCACATGACCAAATAAAG  1000
      ||||||||||||| ||||||||  ||||||| ||||||||||||   |||
seq2  ATCACCTGTCCTC-ACTATATT--AATAAAA-TCACATGACCAA--TAAG  984

seq1  CTTAAACATGCCCACAGGTATAATTTAGTTTGCCAAGAATTTTGTTTTAA  1050
      |||||||||||||||||| |||| |||||||||  |||| ||||||| ||
seq2  CTTAAACATGCCCACAGG-ATAA-TTAGTTTGC--AGAA-TTTGTTTGAA  1029

seq1  AATTCACTTGCAGATCTGTTTAGCTTGGCATCAACAGTACAGTTTGCTGC  1100
         ||||||||| || |||||||| ||||||| |||| ||||  ||||||
seq2  ---TCACTTGCAAAT-TGTTTAGC-TGGCATC-ACAG-ACAG--TGCTGC  1070

seq1  AGGCTCTACCTCTCCTGAGTTTTTCAAGTCTGTGACACCTGGCTGCCCCT  1150
      |||  |||||||| |||||||     ||| ||||| ||||||||| ||||
seq2  AGG--CTACCTCT-CTGAGTT----CAGT-TGTGA-ACCTGGCTG-CCCT  1110

seq1  GAAGGCATTTCATTTTTC  1168
      | ||||| ||||||||||
seq2  G-AGGCA-TTCATTTTTC  1126


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