BAC Information

Click to search

BAC

Clone NameB6Ng01-050G13
Chromosome12 (Build37)
Map Location 104,122,339 - 104,259,933
singlet/doubletdoublet
Overlap geneCox8c, 9030205A07Rik
Upstream geneTrip11, Atxn3, LOC100040305, LOC100040297, Cpsf2, Slc24a4, Rin3, Lgmn, Golga5, Chga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678
Downstream geneLOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050G13.bB6Ng01-050G13.g
ACCDH874364DH874365
length1,1841,204
definitionDH874364|Mus musculus domesticus DNA, BAC clone: B6Ng01-050G13, 5' end.DH874365|Mus musculus domesticus DNA, BAC clone: B6Ng01-050G13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,258,732 - 104,259,933)(104,122,339 - 104,123,604)
sequence
gaattcactcagcagcctcaaatcaaaataacgaccactcacccggtata
accaaagcagtagagaattctaatagagaattcgaatagggaaggcgggt
catttcccggatcccatcacccaggtgcactttacagattaaattgtgtt
agcaaatcattttcttcatttattcatgtgtttgtttatatggcctataa
atgatgccctcaaggggggttcaaaagtacactgtccattaatcttctaa
tgagattcaaactaaagaaagatttttacaacagtgtatgcccacatacc
aaacactgagtttaaaaatatattttttttcttaataacatttcttaaca
attcatgtctgcttttagaataaaagacaattcttaaggaattttacatt
aaaatcgtactgtcgtgcaatataatatttgcttaattccatgaataaga
tacatcaattattctgtcaagaagttctgctcttgaagtttgatttctgt
tctaagtgataattttgcaagtagaaataaagtatagcttaatcacatca
aaattagaagacaagtataaatctgatcaaagcaacagttataatatgta
attgctaaaatttatataaatccagttagtaaatatgggtccatcttgat
tcaaaacttactttccagacttcttgtttatacttcatgaggcattccaa
taattgacaatgatacactgtaaagaagaaaatataatttataatgaaat
gtaaataccagaagatcatccttggagatacgataaatcaattcaccatc
cattttcactttaatcattaaattcgaaagtatttatcacacttttagaa
accataccagcccttagctttaccaaactttaattcaaagccattcagaa
gcactttgcaaactgcactagcaaaggaaatactagacatctcagcaata
tactacgtaatgtaaacttgaccaatgcagctaagaactgcatgagaggg
caagcctcacccatgaggtcaatacagcctcacatcattgagtgactcct
tctttgtcgatgtgctgagcatccaccactctacctacaaacaccaggcc
gatgtgagctagggaaacggtggctgtattttcctatgaactcgccagac
tggaactcttgagtgacacggaaatttacactta
gaattcaggagttcaaatctaacctccagtctatagtaagttgatggcta
gtctgagcaacatgagaccttttctcaaaaactaacaagcaagcaagcaa
gcaaacaaacaattcacctgtaatcccagtcctcagaaggctgaggcagc
aggagtatgaagccagcctgagctacatagtgaactcttgtttataaata
gtgatgtctagttcctcaaaaaatataaaagagtatgaaaagacaagaca
cacaatagaaaaagatgttcacaatttagaggcgaaaagctgagactata
gctcagtgaaatagttctctagcgtgggtgaagaccctggagtcagcctc
cagcacacataaggtcctgaagtggactgtgaggaaagaggcaaacaaat
gaaagagttccaaataaagagaaacaaagagggggctcaaacacactaat
gtaaaggaaggacccatgctaatactgacggctccgactgatttaaggaa
acaagacaagacaggcaagttgggcaggcaagatgacttagtgggtaaag
gtgattgccaccaaacctgaaaacctgacttcaattccaagaacccatat
ggtagtaggagaggactgactccccataagttgtcctccaactctcatac
atatactaagacacatggagtaacacacacacacacacacacacacacat
gaataaaagtaaataaacattaaaaatagctctagctgagttcaaggcca
acctgtgctacaatgagacctctcaaacaaacaaatgaacaacaaacccc
aacaatattagtgtgagattgattaggatctgaactttaaattttttttt
tctgtactgctggtgggaatgaataggaaaacacttagaaagcagtttag
ccttgctagaggatgaactcttttgtgctacacacaactagatagaccag
acaccacctccctaaaggtacttagctgtactatatcatagctagtttat
tgaaactatgctattcgatagtctttggtcaagtattcttaatgtgcttg
tcttaatgattaagagtgttatagcctaagagaatagcattatggcgact
tcagccttcaggcagacgaagcagtttagtcaggaacgtgacagagtcca
tccagtgagggctgatcagttaactctgcgttaggaccatgcccctgagt
ctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_104258732_104259933
seq2: B6Ng01-050G13.b_44_1227 (reverse)

seq1  TAAGTGGTAAAATTTCTGTGTCACTCAGTAGTTTTCAGTCTTGGCGGGGT  50
      ||||||   ||||||| ||||||||||  || || ||||| |||| | ||
seq2  TAAGTG--TAAATTTCCGTGTCACTCAAGAG-TTCCAGTC-TGGC-GAGT  45

seq1  GCATAGGAAAAT-CAG-CACCAGTTTCCTAGCT-ACATACGGCCTGGTGT  97
       ||||||||||| ||| ||||  || ||||||| |||| |||||||||||
seq2  TCATAGGAAAATACAGCCACCGTTTCCCTAGCTCACAT-CGGCCTGGTGT  94

seq1  TTGTGAGGTAGAGTGTGTGGATTGCTCAGCACATCTGACAAAGAAGGAGT  147
      |||| |||||||||| ||||| ||||||||||||| ||||||||||||| 
seq2  TTGT-AGGTAGAGTG-GTGGA-TGCTCAGCACATC-GACAAAGAAGGAG-  139

seq1  TCACTCAAAATGATGGTGAGGCTTGTATGTGACCTCATGGGTGAGGCTTG  197
      ||||||  |||||| ||||||| ||||| |||||||||||||||||||||
seq2  TCACTC--AATGAT-GTGAGGC-TGTAT-TGACCTCATGGGTGAGGCTTG  184

seq1  CCCTTCTCATGCAGTTCTTAGCTGCATTGGTTCAAGTTTACATTACGTAA  247
      ||| |||||||||||||||||||||||||| ||||||||||||||||| |
seq2  CCC-TCTCATGCAGTTCTTAGCTGCATTGG-TCAAGTTTACATTACGT-A  231

seq1  GTATAATTGCTGGAGATGTCTAGTATTTCCTTTGCTAGTGCAGTTTGCAA  297
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTAT-ATTGCT-GAGATGTCTAGTATTTCCTTTGCTAGTGCAGTTTGCAA  279

seq1  AGTGCTTCTGAATGGCTTTGGAATAAAGTTTGGTAAAGCTAAGGGCTGGT  347
      |||||||||||||||||||| | |||||||||||||||||||||||||||
seq2  AGTGCTTCTGAATGGCTTTGAATTAAAGTTTGGTAAAGCTAAGGGCTGGT  329

seq1  ATGGTTTCTAAAAGTGTGATAAATACTTTCGAATTTAATGATTAAAGTGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTCTAAAAGTGTGATAAATACTTTCGAATTTAATGATTAAAGTGA  379

seq1  AAATGGATGGTGAATTGATTTATCGTATCTCCAAGGATGATCTTCTGGTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATGGTGAATTGATTTATCGTATCTCCAAGGATGATCTTCTGGTA  429

seq1  TTTACATTTCATTATAAATTATATTTTCTTCTTTACAGTGTATCATTGTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTCATTATAAATTATATTTTCTTCTTTACAGTGTATCATTGTC  479

seq1  AATTATTGGAATGCCTCATGAAGTATAAACAAGAAGTCTGGAAAGTAAGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTGGAATGCCTCATGAAGTATAAACAAGAAGTCTGGAAAGTAAGT  529

seq1  TTTGAATCAAGATGGACCCATATTTACTAACTGGATTTATATAAATTTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATCAAGATGGACCCATATTTACTAACTGGATTTATATAAATTTTA  579

seq1  GCAATTACATATTATAACTGTTGCTTTGATCAGATTTATACTTGTCTTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTACATATTATAACTGTTGCTTTGATCAGATTTATACTTGTCTTCT  629

seq1  AATTTTGATGTGATTAAGCTATACTTTATTTCTACTTGCAAAATTATCAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGATGTGATTAAGCTATACTTTATTTCTACTTGCAAAATTATCAC  679

seq1  TTAGAACAGAAATCAAACTTCAAGAGCAGAACTTCTTGACAGAATAATTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACAGAAATCAAACTTCAAGAGCAGAACTTCTTGACAGAATAATTG  729

seq1  ATGTATCTTATTCATGGAATTAAGCAAATATTATATTGCACGACAGTACG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTTATTCATGGAATTAAGCAAATATTATATTGCACGACAGTACG  779

seq1  ATTTTAATGTAAAATTCCTTAAGAATTGTCTTTTATTCTAAAAGCAGACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATGTAAAATTCCTTAAGAATTGTCTTTTATTCTAAAAGCAGACA  829

seq1  TGAATTGTTAAGAAATGTTATTAAGAAAAAAAATATATTTTTAAACTCAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGTTAAGAAATGTTATTAAGAAAAAAAATATATTTTTAAACTCAG  879

seq1  TGTTTGGTATGTGGGCATACACTGTTGTAAAAATCTTTCTTTAGTTTGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGTATGTGGGCATACACTGTTGTAAAAATCTTTCTTTAGTTTGAA  929

seq1  TCTCATTAGAAGATTAATGGACAGTGTACTTTTGAACCCCCCTTGAGGGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTAGAAGATTAATGGACAGTGTACTTTTGAACCCCCCTTGAGGGC  979

seq1  ATCATTTATAGGCCATATAAACAAACACATGAATAAATGAAGAAAATGAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTATAGGCCATATAAACAAACACATGAATAAATGAAGAAAATGAT  1029

seq1  TTGCTAACACAATTTAATCTGTAAAGTGCACCTGGGTGATGGGATCCGGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAACACAATTTAATCTGTAAAGTGCACCTGGGTGATGGGATCCGGG  1079

seq1  AAATGACCCGCCTTCCCTATTCGAATTCTCTATTAGAATTCTCTACTGCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACCCGCCTTCCCTATTCGAATTCTCTATTAGAATTCTCTACTGCT  1129

seq1  TTGGTTATACCGGGTGAGTGGTCGTTATTTTGATTTGAGGCTGCTGAGTG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTATACCGGGTGAGTGGTCGTTATTTTGATTTGAGGCTGCTGAGTG  1179

seq1  AATTC  1202
      |||||
seq2  AATTC  1184

seq1: chr12_104122339_104123604
seq2: B6Ng01-050G13.g_66_1269

seq1  GAATTCAGGAGTTCAAATCTAACCTCCAGTCTATAGTAAGTTGATGGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGTTCAAATCTAACCTCCAGTCTATAGTAAGTTGATGGCTA  50

seq1  GTCTGAGCAACATGAGACCTTTTCTCAAAAACTAACAAGCAAGCAAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGCAACATGAGACCTTTTCTCAAAAACTAACAAGCAAGCAAGCAA  100

seq1  GCAAACAAACAATTCACCTGTAATCCCAGTCCTCAGAAGGCTGAGGCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAACAATTCACCTGTAATCCCAGTCCTCAGAAGGCTGAGGCAGC  150

seq1  AGGAGTATGAAGCCAGCCTGAGCTACATAGTGAACTCTTGTTTATAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTATGAAGCCAGCCTGAGCTACATAGTGAACTCTTGTTTATAAATA  200

seq1  GTGATGTCTAGTTCCTCAAAAAATATAAAAGAGTATGAAAAGACAAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTCTAGTTCCTCAAAAAATATAAAAGAGTATGAAAAGACAAGACA  250

seq1  CACAATAGAAAAAGATGTTCACAATTTAGAGGCGAAAAGCTGAGACTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAGAAAAAGATGTTCACAATTTAGAGGCGAAAAGCTGAGACTATA  300

seq1  GCTCAGTGAAATAGTTCTCTAGCGTGGGTGAAGACCCTGGAGTCAGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGAAATAGTTCTCTAGCGTGGGTGAAGACCCTGGAGTCAGCCTC  350

seq1  CAGCACACATAAGGTCCTGAAGTGGACTGTGAGGAAAGAGGCAAACAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACACATAAGGTCCTGAAGTGGACTGTGAGGAAAGAGGCAAACAAAT  400

seq1  GAAAGAGTTCCAAATAAAGAGAAACAAAGAGGGGGCTCAAACACACTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGTTCCAAATAAAGAGAAACAAAGAGGGGGCTCAAACACACTAAT  450

seq1  GTAAAGGAAGGACCCATGCTAATACTGACGGCTCCGACTGATTTAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGAAGGACCCATGCTAATACTGACGGCTCCGACTGATTTAAGGAA  500

seq1  ACAAGACAAGACAGGCAAGTTGGGCAGGCAAGATGACTTAGTGGGTAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACAAGACAGGCAAGTTGGGCAGGCAAGATGACTTAGTGGGTAAAG  550

seq1  GTGATTGCCACCAAACCTGAAAACCTGACTTCAATTCCAAGAACCCATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGCCACCAAACCTGAAAACCTGACTTCAATTCCAAGAACCCATAT  600

seq1  GGTAGTAGGAGAGGACTGACTCCCCATAAGTTGTCCTCCAACTCTCATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTAGGAGAGGACTGACTCCCCATAAGTTGTCCTCCAACTCTCATAC  650

seq1  ATATACTAAGACACATGGAGTAACACACACACACACACACACACACACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTAAGACACATGGAGTAACACACACACACACACACACACACACAT  700

seq1  GAATAAAAGTAAATAAACATTAAAAATAGCTCTAGCTGAGTTCAAGGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAAGTAAATAAACATTAAAAATAGCTCTAGCTGAGTTCAAGGCCA  750

seq1  ACCTGTGCTACAATGAGACCTCTCAAACAAACAAATGAACAACAAACCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGCTACAATGAGACCTCTCAAACAAACAAATGAACAACAAACCCC  800

seq1  AACAATATTTAGTGTGAGATTTGATTAGGATCTGAACTTTAAATTTTTTT  850
      ||||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  AACAATA-TTAGTGTGAGA-TTGATTAGGATCTGAACTTTAAATTTTTTT  848

seq1  TTTCTGTACTGCTGGTGGGAATGAAAATAGGAAAAACACTTAGGAAAGCA  900
      |||||||||||||||||||||||  |||||| |||||||||| |||||||
seq2  TTTCTGTACTGCTGGTGGGAATG--AATAGG-AAAACACTTA-GAAAGCA  894

seq1  GTTTAGCCTTGCCTAGGAAGGATGAAACTCTTTTGTGCTACCACACAACT  950
      ||||||||||| ||||  |||||| ||||||||||||||| |||||||||
seq2  GTTTAGCCTTG-CTAG--AGGATG-AACTCTTTTGTGCTA-CACACAACT  939

seq1  AAGATAGACCAGGACACCCAACCCTCCCCTAAAGGTACTTAGCTGGTACT  1000
       |||||||||| ||||||  |||   |||||||||||||||||| |||||
seq2  -AGATAGACCA-GACACC--ACC--TCCCTAAAGGTACTTAGCT-GTACT  982

seq1  TAATTATCATTAGGCTAAGTTTATTTGAAAACTATGCTAATTTCGTATTA  1050
          ||||||   ||| ||||||||   |||||||||||  |||| ||  
seq2  ---ATATCAT--AGCT-AGTTTATT--GAAACTATGCTA--TTCG-AT--  1019

seq1  GGTCTTTGTCAAAGTTATTCTTTAATGTGCTTGTTCCTTTAAATGATTAA  1100
       |||||||   ||| ||||| |||||||||||||  |||  |||||||||
seq2  AGTCTTTGGTCAAG-TATTC-TTAATGTGCTTGT--CTT--AATGATTAA  1063

seq1  AGATGTTATAGCCTAGGAGATTAGCCATTTAATTGGCAGCTGTCAAGCCC  1150
         |||||||||||| |||| ||| ||||    ||||  || |||   ||
seq2  GAGTGTTATAGCCTAAGAGAATAG-CATT---ATGGCGACT-TCA--GCC  1106

seq1  TTCAGGCAGCAGCAGCAGCAGCTCAGCCCAGGAACCTGACCAAGTAGCCC  1200
      |||||   ||||  | ||||| | ||  ||||||| ||||  |||     
seq2  TTCAG---GCAGACGAAGCAGTTTAG-TCAGGAACGTGACAGAGT-----  1147

seq1  CAAATCAGAGAGGGCTGGGATCCAAGTGTAACCCCTGCTGTTGGGGGCCA  1250
      | |  ||| |||||||  ||||  ||| ||| | |||| |||  || |||
seq2  CCATCCAGTGAGGGCT--GATC--AGT-TAA-CTCTGC-GTT-AGGACCA  1189

seq1  TGGTCCCTGAGTCTAG  1266
      | | ||||||||||||
seq2  T-GCCCCTGAGTCTAG  1204