BAC Information

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BAC

Clone NameB6Ng01-050O21
Chromosome12 (Build37)
Map Location 97,160,849 - 97,277,328
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039603, LOC667688, Flrt2
Downstream gene1700019M22Rik, LOC100039664, EG628277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050O21.bB6Ng01-050O21.g
ACCDH874729DH874730
length1,120976
definitionDH874729|Mus musculus domesticus DNA, BAC clone: B6Ng01-050O21, 5' end.DH874730|Mus musculus domesticus DNA, BAC clone: B6Ng01-050O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,160,849 - 97,161,997)(97,276,336 - 97,277,328)
sequence
gaattcctgtctcaaaaaaacaaacaaaataccccccaaaacaaaaacaa
acaaacaaaacaacaacttggaaggtagatgatgttagttagcacttgca
taatagaatgaatgttcttaatgcctctggactgcattgttttaaaggat
aaaatcataaatcttatgttatatttatttttaataataatttatgaaga
taataataatatgtgtgaatgatctaaaagtagaaggaaagatgtcttga
gtaagagccagaactagcaggagggggctcagaaaagggatgaagagaga
tgacatgtgtttctgaaagaatgttcaagagttttatgtatttatatgga
aaatgcacatgaaactcaatatacccagtgctagtaaatcagcatatttc
ttcatacatttatattctaatgagatcatgggaatagaagaactgttcct
agcacaggggacaatattaaatattttggtaacagtcttgcctcagccat
tgtcttcatttacctctctgcacactgtgtttgtcattatagtgcatatt
atacaatatacttatgttctctgaaggaaagagaatcaagactatttttt
atttgattctggtttcttaagcactacacaacccattgatcatagcatct
caatgaatatttactgaggcactccattagtaagccaagaagagtatgat
tggagagcatgtatgttaatgggttttcaagtgattattctgttttactg
tgatgttgacagagcattcacaaggatgtaagagtgggctccacctcaca
cagttgaaaacaaaattggaaagagaatagagaaccatgagattactcca
ctgcctgtccctggggagaagtttgcagtgtaaaactagagacatactgt
gacttagctttgtctggatccaaatgaacgtcttcgtgtgctgagaactg
tcatttatgtctgggtgtgggagtgaaagtcatggaaagtcacattcagt
gactgctctttaggctcttctagaacaataactaactcaaatttaagtct
cacactacagtcctcgggtagtttgatgaagcatgcagcgagtactctta
tctgcagtctctacggacct
gaattctgactgcaggtgagaggcaccctgagtcttatctcaggaatgta
gattcctccttaacagcacggggtgtcaagctgagctcagcacataactc
aggtccttagaaatcttgggagtcaggaagagataaggaagagaggacta
taattcaaattttagggtcttaggtgccaggaagggatagcgaggaggag
gtgtccagctcctaacacaaggccatttggcttattagggtgggaaactt
tcgaaagtcttactttctcaaggtatggtctccaacaaaacccccttaag
gcttcctctatagcaccagaaaaccagaaaacgcgttgtctcgtttcatt
aaatatgggattctctcaagatttgcatcataccctgctgtaaactgttc
tatttaacctctgtgtttagatttcattccaaatgccataaaatcaaagg
aggtatttcacaacaaaaattagcaccacagtctcactgtacttttcttt
gcagttcttatgtgttgcttcatgattataacttttaatataaaaaatgt
tcttataattccttgcttaaagcttatccccaatgagaatgaagtgttca
cacatgactatctcaacctatttgtttcagaaatgtattagaggcaaaga
ggagcgtggatgggataggggttcatggagtggcatctggtaggagacaa
catataaaaagtaagtaaacaaaataattaataaaaaagagtatcaccta
ctagccatcaagtagtttgttaaataaattactcaagcaaaatgctgatt
aaacaaatgccccataaagataggaacaggcaagattcagactgtgtaat
ttaaaattcaaagtgatatggaggatatgatcttgttaatcagaaagaaa
ttacaacagctgataatatctaccaggcagcttcctgatcaggacattat
ccatagagagtaaatgtggcagctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_97160849_97161997
seq2: B6Ng01-050O21.b_48_1167

seq1  GAATTCCTGTCTCAAAAAAACAAACAAAATACCCCCCAAAACAAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCTCAAAAAAACAAACAAAATACCCCCCAAAACAAAAACAA  50

seq1  ACAAACAAAACAACAACTTGGAAGGTAGATGATGTTAGTTAGCACTTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAACAACAACTTGGAAGGTAGATGATGTTAGTTAGCACTTGCA  100

seq1  TAATAGAATGAATGTTCTTAATGCCTCTGGACTGCATTGTTTTAAAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAATGAATGTTCTTAATGCCTCTGGACTGCATTGTTTTAAAGGAT  150

seq1  AAAATCATAAATCTTATGTTATATTTATTTTTAATAATAATTTATGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATAAATCTTATGTTATATTTATTTTTAATAATAATTTATGAAGA  200

seq1  TAATAATAATATGTGTGAATGATCTAAAAGTAGAAGGAAAGATGTCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAATATGTGTGAATGATCTAAAAGTAGAAGGAAAGATGTCTTGA  250

seq1  GTAAGAGCCAGAACTAGCAGGAGGGGGCTCAGAAAAGGGATGAAGAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGCCAGAACTAGCAGGAGGGGGCTCAGAAAAGGGATGAAGAGAGA  300

seq1  TGACATGTGTTTCTGAAAGAATGTTCAAGAGTTTTATGTATTTATATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGTGTTTCTGAAAGAATGTTCAAGAGTTTTATGTATTTATATGGA  350

seq1  AAATGCACATGAAACTCAATATACCCAGTGCTAGTAAATCAGCATATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCACATGAAACTCAATATACCCAGTGCTAGTAAATCAGCATATTTC  400

seq1  TTCATACATTTATATTCTAATGAGATCATGGGAATAGAAGAACTGTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACATTTATATTCTAATGAGATCATGGGAATAGAAGAACTGTTCCT  450

seq1  AGCACAGGGGACAATATTAAATATTTTGGTAACAGTCTTGCCTCAGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGGGGACAATATTAAATATTTTGGTAACAGTCTTGCCTCAGCCAT  500

seq1  TGTCTTCATTTACCTCTCTGCACACTGTGTTTGTCATTATAGTGCATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCATTTACCTCTCTGCACACTGTGTTTGTCATTATAGTGCATATT  550

seq1  ATACAATATACTTATGTTCTCTGAAGGAAAGAGAATCAAGACTATTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATATACTTATGTTCTCTGAAGGAAAGAGAATCAAGACTATTTTTT  600

seq1  ATTTGATTCTGGTTTCTTAAGCACTACACAACCCATTGATCATAGCATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTCTGGTTTCTTAAGCACTACACAACCCATTGATCATAGCATCT  650

seq1  CAATGAATATTTACTGAGGCACTCCATTAGTAAGCCAAGAAGAGTATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAATATTTACTGAGGCACTCCATTAGTAAGCCAAGAAGAGTATGAT  700

seq1  TGGAGAGCATGTATGTTAATGGGTTTTCAAGTGATTATTCTGTTTTACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGCATGTATGTTAATGGGTTTTCAAGTGATTATTCTGTTTTACTG  750

seq1  TGATGTTGACAGAGCATTCACAAGGATGTAAGAGTGGGCTCCACCTCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGACAGAGCATTCACAAGGATGTAAGAGTGGGCTCCACCTCACA  800

seq1  CAGTTGAAAACAAAATTGGAAAGAGAATAGAGAACCATGAGATTACTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAAAACAAAATTGGAAAGAGAATAGAGAACCATGAGATTACTCCA  850

seq1  CTGCCTGTCCCTGGGGAGAAGTTTGCAGTGTAAAAACTAGAGACAATACT  900
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  CTGCCTGTCCCTGGGGAGAAGTTTGCAGTGT-AAAACTAGAGAC-ATACT  898

seq1  GTGACTTAAGCTTTTGTTCTGGATCCAAATGAACGTCTCCGTGTGCCTGA  950
      ||||||| ||||||   ||||||||||||||||||||| |||||| ||| 
seq2  GTGACTT-AGCTTT--GTCTGGATCCAAATGAACGTCTTCGTGTG-CTG-  943

seq1  AGAACTGTCATTTATGTCTGGGTTGTGGGAGTGAAAAGTCATGGAAAGTT  1000
      |||||||||||||||||||||| |||||||||| |||||||||||||| |
seq2  AGAACTGTCATTTATGTCTGGG-TGTGGGAGTG-AAAGTCATGGAAAG-T  990

seq1  CACATTCAGGTGACTGCCTCTTTTAGCTCTTCTAGAAACAATTACCTTAA  1050
      |||||||| ||||||| ||||||  |||||||||| |||||| ||  |||
seq2  CACATTCA-GTGACTG-CTCTTTAGGCTCTTCTAG-AACAATAAC--TAA  1035

seq1  CTCAAATTTAAGTCTCTACACTTACAGTTCCTCGTGTAATGTTTGATGAA  1100
      |||||||||||||||| |||| ||||| |||||| |||  ||||||||||
seq2  CTCAAATTTAAGTCTC-ACAC-TACAG-TCCTCGGGTA--GTTTGATGAA  1080

seq1  GGCAGGCAGCGAGAAGTAACTCTTTAATCTGCATGCTCACTACGGACCT  1149
       ||| ||||||||     ||||||  |||||||   || ||||||||||
seq2  -GCATGCAGCGAG----TACTCTT--ATCTGCA--GTCTCTACGGACCT  1120

seq1: chr12_97276336_97277328
seq2: B6Ng01-050O21.g_69_1044 (reverse)

seq1  TCAGCTGCCACATTTTACTTCTCTTATGGATAATGTTCCTTGATTCAGGA  50
      |||||||||||| ||||| |||| ||||||||||||  | ||| ||||||
seq2  TCAGCTGCCACA-TTTAC-TCTC-TATGGATAATGT--CCTGA-TCAGGA  44

seq1  AGCTTGCCTGGTAAGATATTTATCAGCTGTTGTTAATTTTCTTTTCTTGA  100
      ||| |||||||| ||||| ||||||||||||| ||||||   |||||   
seq2  AGC-TGCCTGGT-AGATA-TTATCAGCTGTTG-TAATTT--CTTTCT--G  86

seq1  ATTAACAAGATCATATTCCTCCATATCACTTTGAATTTTTAAATTACACA  150
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  ATTAACAAGATCATA-TCCTCCATATCACTTTGAA-TTTTAAATTACACA  134

seq1  GTCTGAAATCTTGCCTGTTCCTATCTTTATGGGGCATTTGTTTAATCAGC  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTG-AATCTTGCCTGTTCCTATCTTTATGGGGCATTTGTTTAATCAGC  183

seq1  ATTTTGCTTGAGTAATTTATTTAACAAACTACTTGATGGCTAGTAGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTTGAGTAATTTATTTAACAAACTACTTGATGGCTAGTAGGTGA  233

seq1  TACTCTTTTTTATTAATTATTTTGTTTACTTACTTTTTATATGTTGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTTTTTATTAATTATTTTGTTTACTTACTTTTTATATGTTGTCTC  283

seq1  CTACCAGATGCCACTCCATGAACCCCTATCCCATCCACGCTCCTCTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGATGCCACTCCATGAACCCCTATCCCATCCACGCTCCTCTTTGC  333

seq1  CTCTAATACATTTCTGAAACAAATAGGTTGAGATAGTCATGTGTGAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATACATTTCTGAAACAAATAGGTTGAGATAGTCATGTGTGAACAC  383

seq1  TTCATTCTCATTGGGGATAAGCTTTAAGCAAGGAATTATAAGAACATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTCATTGGGGATAAGCTTTAAGCAAGGAATTATAAGAACATTTT  433

seq1  TTATATTAAAAGTTATAATCATGAAGCAACACATAAGAACTGCAAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTAAAAGTTATAATCATGAAGCAACACATAAGAACTGCAAAGAAA  483

seq1  AGTACAGTGAGACTGTGGTGCTAATTTTTGTTGTGAAATACCTCCTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGTGAGACTGTGGTGCTAATTTTTGTTGTGAAATACCTCCTTTGA  533

seq1  TTTTATGGCATTTGGAATGAAATCTAAACACAGAGGTTAAATAGAACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGGCATTTGGAATGAAATCTAAACACAGAGGTTAAATAGAACAGT  583

seq1  TTACAGCAGGGTATGATGCAAATCTTGAGAGAATCCCATATTTAATGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCAGGGTATGATGCAAATCTTGAGAGAATCCCATATTTAATGAAA  633

seq1  CGAGACAACGCGTTTTCTGGTTTTCTGGTGCTATAGAGGAAGCCTTAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAACGCGTTTTCTGGTTTTCTGGTGCTATAGAGGAAGCCTTAAGG  683

seq1  GGGTTTTGTTGGAGACCATACCTTGAGAAAGTAAGACTTTCGAAAGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTGTTGGAGACCATACCTTGAGAAAGTAAGACTTTCGAAAGTTTC  733

seq1  CCACCCTAATAAGCCAAATGGCCTTGTGTTAGGAGCTGGACACCTCCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTAATAAGCCAAATGGCCTTGTGTTAGGAGCTGGACACCTCCTCC  783

seq1  TCGCTATCCCTTCCTGGCACCTAAGACCCTAAAATTTGAATTATAGTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTATCCCTTCCTGGCACCTAAGACCCTAAAATTTGAATTATAGTCCT  833

seq1  CTCTTCCTTATCTCTTCCTGACTCCCAAGATTTCTAAGGACCTGAGTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTTATCTCTTCCTGACTCCCAAGATTTCTAAGGACCTGAGTTAT  883

seq1  GTGCTGAGCTCAGCTTGACACCCCGTGCTGTTAAGGAGGAATCTACATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAGCTCAGCTTGACACCCCGTGCTGTTAAGGAGGAATCTACATTC  933

seq1  CTGAGATAAGACTCAGGGTGCCTCTCACCTGCAGTCAGAATTC  993
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATAAGACTCAGGGTGCCTCTCACCTGCAGTCAGAATTC  976