BAC Information

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BAC

Clone NameB6Ng01-051A21
Chromosome12 (Build37)
Map Location 74,467,836 - 74,620,307
singlet/doubletdoublet
Overlap geneEG666356
Upstream geneRtn1, Lrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6
Downstream geneTmem30b, 2210039B01Rik, Prkch, EG666385, LOC100041489, Hif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051A21.bB6Ng01-051A21.g
ACCDH874812DH874813
length1,1021,179
definitionDH874812|Mus musculus domesticus DNA, BAC clone: B6Ng01-051A21, 5' end.DH874813|Mus musculus domesticus DNA, BAC clone: B6Ng01-051A21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,467,836 - 74,468,939)(74,619,122 - 74,620,307)
sequence
gaattcaaacaggaaatgtaggatgcagaccgccatctttctttggcccc
acttttcatcagggtatgtagggcttctcccagatccccactaagaaaga
attactctgtatccgggtttctctccttcctgtttctggcttctgtgggt
ttattagtgaatcagaactcaagctgtgctgttactagtctggggtcggg
cattatgaacaggaaacacttaaaaaaaaaaaaaaaacaaagcctgcaaa
aaccattttacatttttctggcttactttttaagaactatttctccccaa
tacgtttttactcctctctcctacccacgactaacagtggttgggacatt
gcaaccattttgcacacctaattcaattcctccagatgttagtgttccag
agcctttaagacacatgatgagtcgtggggagaggccccatcaagggagt
ctgtggtgccaggtgaacaaaggcacctttatctccaggtcccaacctgg
tgagaatcacagcatcgggggactcaaagccaactcttgtttgaaagcaa
attgggtcttccaaaaacacatccggggctctgcatacctgtgagtgaca
gccttctaggcccttgactaactgctgtgtcgggctgtgctttggcacgc
caagtcctgccctcgggatgcaaatggaaccagagctctgaagcaggcct
gggaagcaagtccagtggtctgatttgcatgggaagctttaccctctgag
tgaaggcagccaaattccctgggctccccggccctccggaaatgcgcctt
acaggggctgggggccctgggcccgaccgcgtgggtgtgatttgatgttc
atcgccacagctgccgcgctcagccctggtcattgccattggtcccgctc
cattttactgcctcggaatcctcttgttgcatgttcgtggttaatacagc
agccaggagacgccagacagccttcagcacctggtcaaatttaagctcat
tacacatgatgtccccacccccattgtcagcgcgaggggaggtcagatgg
ttcatttgggaaggtgccacttgttgagtccctgccagactcactctcta
tt
gaattcttccctccatgcagcactcttcctggtcagaactgtaggttaac
tggaggtctgtgtctccattctttagagtccacatagcatcaccataaca
aaatacttgacaagcgacttatcaagatgtccagccaacactggctctag
agaactgcctggaggctgcatcactgcagggtatacagtggtggtgagag
acatcaggcttccttcttttacaacaatccattcccaagaacccaagagg
ccacacctgataacctaaggaccttccacagactcaaccttaatggttct
tctgttcctttccgaaacattacccaagagaccaagcatgtcactacccg
ggatcctcgggaagtccctcaaccatgagagaagtacagagtatttctcc
cagcaccgtccaggtgatgatacagagctggtggggtgaggaagcggtgt
tgcgcggatatgttagaatgataaacacaatgaccaaaagcagattagga
agagaccggtctacatcacagtccatcatcagagaagcctcggcaggaac
ttaaaggcaggaacctggaggcaggaacaggcacagagaccacagaggag
cactgcttactggcttgttcctcctggcttgctctcttttcttttacaac
cccgaaccacctgcgcaagggtggtactgtccacagaggtctgggtcctt
ccacataaatcaccaatcatgaaagccccaaaggcttgcctatgggctaa
tctgataggggcattttctccgtcaaagtccccttttctcagatggctag
cagggatgaccaccagagcacaggggatgaccaccaaccagagcacaagg
gatgaccgccagtacctgtctccaccagccaggttccctacggatagata
gctggccattcccaggattttccaccccatcctctagtaaatgtcgtata
ggcagagaaacctttaaaatgaacttaagtttactcatcccaaattaaag
gcatgtctaccacggcttcacattatattccctcccccaaattcacaacc
cgctttggcagcctttcagcttgtttttttttggcgtggccatatcaaga
tttgaaagcagaaaattatttttttcagggaagctattggcttctttggc
ttgattagctgagacattctagccgtctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_74467836_74468939
seq2: B6Ng01-051A21.b_37_1138

seq1  GAATTCAAACAGGAAATGTAGGATGCAGACCGCCATCTTTCTTTGGCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAGGAAATGTAGGATGCAGACCGCCATCTTTCTTTGGCCCC  50

seq1  ACTTTTCATCAGGGTATGTAGGGCTTCTCCCAGATCCCCACTAAGAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCATCAGGGTATGTAGGGCTTCTCCCAGATCCCCACTAAGAAAGA  100

seq1  ATTACTCTGTATCCGGGTTTCTCTCCTTCCTGTTTCTGGCTTCTGTGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCTGTATCCGGGTTTCTCTCCTTCCTGTTTCTGGCTTCTGTGGGT  150

seq1  TTATTAGTGAATCAGAACTCAAGCTGTGCTGTTACTAGTCTGGGGTCGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGTGAATCAGAACTCAAGCTGTGCTGTTACTAGTCTGGGGTCGGG  200

seq1  CATTATGAACAGGAAACACTTAAAAAAAAAAAAAAAACAAAGCCTGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGAACAGGAAACACTTAAAAAAAAAAAAAAAACAAAGCCTGCAAA  250

seq1  AACCATTTTACATTTTTCTGGCTTACTTTTTAAGAACTATTTCTCCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTTACATTTTTCTGGCTTACTTTTTAAGAACTATTTCTCCCCAA  300

seq1  TACGTTTTTACTCCTCTCTCCTACCCACGACTAACAGTGGTTGGGACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTTTTACTCCTCTCTCCTACCCACGACTAACAGTGGTTGGGACATT  350

seq1  GCAACCATTTTGCACACCTAATTCAATTCCTCCAGATGTTAGTGTTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCATTTTGCACACCTAATTCAATTCCTCCAGATGTTAGTGTTCCAG  400

seq1  AGCCTTTAAGACACATGATGAGTCGTGGGGAGAGGCCCCATCAAGGGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTAAGACACATGATGAGTCGTGGGGAGAGGCCCCATCAAGGGAGT  450

seq1  CTGTGGTGCCAGGTGAACAAAGGCACCTTTATCTCCAGGTCCCAACCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTGCCAGGTGAACAAAGGCACCTTTATCTCCAGGTCCCAACCTGG  500

seq1  TGAGAATCACAGCATCGGGGGACTCAAAGCCAACTCTTGTTTGAAAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATCACAGCATCGGGGGACTCAAAGCCAACTCTTGTTTGAAAGCAA  550

seq1  ATTGGGTCTTCCAAAAACACATCCGGGGCTCTGCATACCTGTGAGTGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTCTTCCAAAAACACATCCGGGGCTCTGCATACCTGTGAGTGACA  600

seq1  GCCTTCTAGGCCCTTGACTAACTGCTGTGTCGGGCTGTGCTTTGGCACGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTAGGCCCTTGACTAACTGCTGTGTCGGGCTGTGCTTTGGCACGC  650

seq1  CAAGTCCTGCCCTCGGGATGCAAATGGAACCAGAGCTCTGAAGCAGGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCTGCCCTCGGGATGCAAATGGAACCAGAGCTCTGAAGCAGGCCT  700

seq1  GGGAAGCAAGTCCAGTGGTCTGATTTGCATGGGAAGCTTTACCCTCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCAAGTCCAGTGGTCTGATTTGCATGGGAAGCTTTACCCTCTGAG  750

seq1  TGAAGGCAGCCAAATTCCCTGGGCTCCCCGGCCCTCCGGAAATGCGCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCAGCCAAATTCCCTGGGCTCCCCGGCCCTCCGGAAATGCGCCTT  800

seq1  ACAGGGGCTGGGGGCCCTGGGCCCGACCGCGTGGGTGTGATTTGAATGTT  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACAGGGGCTGGGGGCCCTGGGCCCGACCGCGTGGGTGTGATTTG-ATGTT  849

seq1  CATCGCCACAGCTGCCGCGCTCAGCCCTGGTCATTGCCATTGGTCCCGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGCCACAGCTGCCGCGCTCAGCCCTGGTCATTGCCATTGGTCCCGCT  899

seq1  CCATTTTACTGCCTCGGAATCCTCTTG-TGCATGTTCGTGGTTAATACAG  949
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCATTTTACTGCCTCGGAATCCTCTTGTTGCATGTTCGTGGTTAATACAG  949

seq1  CAGCCAGGAGACGCCAGACAGCTCTCAGCACCTGGTTCAAATTTAAGGCT  999
      ||||||||||||||||||||||  ||||||||||| |||||||||| |||
seq2  CAGCCAGGAGACGCCAGACAGCCTTCAGCACCTGG-TCAAATTTAA-GCT  997

seq1  CATTTACACATGATGT-CACACACGCATTGTCAGCGCGA-GGGAGGTCAG  1047
      || ||||||||||||| | ||| | |||||||||||||| ||||||||| 
seq2  CA-TTACACATGATGTCCCCACCCCCATTGTCAGCGCGAGGGGAGGTCA-  1045

seq1  GATGGTTCATTTTGGGAAGGTTTGCATTGTTGAGTCTCTGCAGCACTCAC  1097
      ||||||||| |||||||||||     |||||||||| ||||   ||||||
seq2  GATGGTTCA-TTTGGGAAGGTGCCACTTGTTGAGTCCCTGCCAGACTCAC  1094

seq1  T-GCTATT  1104
      |  |||||
seq2  TCTCTATT  1102

seq1: chr12_74619122_74620307
seq2: B6Ng01-051A21.g_69_1247 (reverse)

seq1  AAGAGCGGCTAGAAAATGGTCAAACTAATC-AGGCAAAGAAGCCATTAGC  49
      |||| |||||||  ||||    | |||||| || ||||||||||| ||||
seq2  AAGA-CGGCTAG--AATGTCTCAGCTAATCAAGCCAAAGAAGCCAATAGC  47

seq1  TTTTCCCTGAAAAAAATTA-TTTCTGCCTTTCAAATCTTGATAT-GCCAC  97
        ||||||||||||||| | |||||| ||||||||||||||||| |||||
seq2  --TTCCCTGAAAAAAATAATTTTCTG-CTTTCAAATCTTGATATGGCCAC  94

seq1  TGCATAAAAAAACAAGCTGGAAGGCTGCCAAAGCGTG-TGTGAATTTGGG  146
        || |||||||||||||| ||||||||||||||| | ||||||||| ||
seq2  GCCAAAAAAAAACAAGCTGAAAGGCTGCCAAAGCGGGTTGTGAATTT-GG  143

seq1  GGGAGGGAATTATTAATGGTGAGCCGTTGGTAGACATGCCTTTAATTTGG  196
      ||||||||||   |||||   ||||| ||||||||||||||||||||| |
seq2  GGGAGGGAAT--ATAATGTGAAGCCG-TGGTAGACATGCCTTTAATTT-G  189

seq1  GGATGAGTAAACTTAAGTTCATTTTAAAGGTTTCTCTGCCTATACGACAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGTAAACTTAAGTTCATTTTAAAGGTTTCTCTGCCTATACGACAT  239

seq1  TTACTAGAGGATGGGGTTGGAAAATCCTGGGAATGGCCAGCTATCTATCC  296
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTACTAGAGGATGGGG-TGGAAAATCCTGGGAATGGCCAGCTATCTATCC  288

seq1  GTAGGGAACCTGGCTGGTGGAGACAGGTACTGGCGGTCATCCCTTGTGCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGAACCTGGCTGGTGGAGACAGGTACTGGCGGTCATCCCTTGTGCT  338

seq1  CTGGTTGGTGGTCAT-CCCTGTGCTCTGGTGGTCATCCCTGCTAGCCATC  395
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGGTTGGTGGTCATCCCCTGTGCTCTGGTGGTCATCCCTGCTAGCCATC  388

seq1  TGAGAAAAGGGGACTTTGACGGAGAAAATGCCCCTATCAGATTAGCCCAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAAGGGGACTTTGACGGAGAAAATGCCCCTATCAGATTAGCCCAT  438

seq1  AGGCAAGCCTTTGGGGCTTTCATGATTGGTGATTTATGTGGAAGGACCCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGCCTTTGGGGCTTTCATGATTGGTGATTTATGTGGAAGGACCCA  488

seq1  GACCTCTGTGGACAGTACCACCCTTGCGCAGGTGGTTCGGGGTTGTAAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTGTGGACAGTACCACCCTTGCGCAGGTGGTTCGGGGTTGTAAAA  538

seq1  GAAAAGAGAGCAAGCCAGGAGGAACAAGCCAGTAAGCAGTGCTCCTCTGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGAGCAAGCCAGGAGGAACAAGCCAGTAAGCAGTGCTCCTCTGT  588

seq1  GGTCTCTGTGCCTGTTCCTGCCTCCAGGTTCCTGCCTTTAAGTTCCTGCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTGTGCCTGTTCCTGCCTCCAGGTTCCTGCCTTTAAGTTCCTGCC  638

seq1  GAGGCTTCTCTGATGATGGACTGTGATGTAGACCGGTCTCTTCCTAATCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTCTCTGATGATGGACTGTGATGTAGACCGGTCTCTTCCTAATCT  688

seq1  GCTTTTGGTCATTGTGTTTATCATTCTAACATATCCGCGCAACACCGCTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGGTCATTGTGTTTATCATTCTAACATATCCGCGCAACACCGCTT  738

seq1  CCTCACCCCACCAGCTCTGTATCATCACCTGGACGGTGCTGGGAGAAATA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCCCACCAGCTCTGTATCATCACCTGGACGGTGCTGGGAGAAATA  788

seq1  CTCTGTACTTCTCTCATGGTTGAGGGACTTCCCGAGGATCCCGGGTAGTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTACTTCTCTCATGGTTGAGGGACTTCCCGAGGATCCCGGGTAGTG  838

seq1  ACATGCTTGGTCTCTTGGGTAATGTTTCGGAAAGGAACAGAAGAACCATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTTGGTCTCTTGGGTAATGTTTCGGAAAGGAACAGAAGAACCATT  888

seq1  AAGGTTGAGTCTGTGGAAGGTCCTTAGGTTATCAGGTGTGGCCTCTTGGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGAGTCTGTGGAAGGTCCTTAGGTTATCAGGTGTGGCCTCTTGGG  938

seq1  TTCTTGGGAATGGATTGTTGTAAAAGAAGGAAGCCTGATGTCTCTCACCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGGAATGGATTGTTGTAAAAGAAGGAAGCCTGATGTCTCTCACCA  988

seq1  CCACTGTATACCCTGCAGTGATGCAGCCTCCAGGCAGTTCTCTAGAGCCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTATACCCTGCAGTGATGCAGCCTCCAGGCAGTTCTCTAGAGCCA  1038

seq1  GTGTTGGCTGGACATCTTGATAAGTCGCTTGTCAAGTATTTTGTTATGGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGCTGGACATCTTGATAAGTCGCTTGTCAAGTATTTTGTTATGGT  1088

seq1  GATGCTATGTGGACTCTAAAGAATGGAGACACAGACCTCCAGTTAACCTA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTATGTGGACTCTAAAGAATGGAGACACAGACCTCCAGTTAACCTA  1138

seq1  CAGTTCTGACCAGGAAGAGTGCTGCATGGAGGGAAGAATTC  1186
      |||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTGACCAGGAAGAGTGCTGCATGGAGGGAAGAATTC  1179