BAC Information

Click to search

BAC

Clone NameB6Ng01-051F16
Chromosome12 (Build37)
Map Location 87,210,421 - 87,366,779
singlet/doubletdoublet
Overlap geneTtll5
Upstream geneLtbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik
Downstream geneTgfb3, 1700019E19Rik, 1700020O03Rik, LOC100042112, Esrrb, LOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051F16.bB6Ng01-051F16.g
ACCDH875024DH875025
length1,1481,113
definitionDH875024|Mus musculus domesticus DNA, BAC clone: B6Ng01-051F16, 5' end.DH875025|Mus musculus domesticus DNA, BAC clone: B6Ng01-051F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,210,421 - 87,211,587)(87,365,634 - 87,366,779)
sequence
gaattcaggtacttggtgattgccaaggaattcagattacctcacaggct
gtacactgtccagaatctgccaccgcagcaagtagggggaagagatacca
gcgacagagagaagtccttcctagcctgtcactctccctggcaggccttt
gctgtttgtgaagtctgagtcatttctggctctgaggaccaaggatcagg
ctggtaatcccctcccagactctgcagggcgctgcccagtaactgcagcg
ttttggcagtttccctgctgcagctggttgacagcagatcagagctctcc
ggctcaggccgcctgttgtcttccatcagatttttctaggtcaggctagg
atgaaactcttgcttctggcaagagtgcctgagatgaagtctcattgccc
gtgacccctctccgcaggaagctctacatgctaaagatgactcaggtgct
actactgcagtctccttgctttgtgcatttgttctgaatgtagaagatat
acctaccaaattgagtacttaactcttctatacctaggctctgtgatgcc
gactgactgtaagagtatacactgtcaggtgttcaggccacgtcatagtt
tgtacgtgagagaagcattagtaagatcttactgactttgtgcttgcttc
ccccttgtgcttcttctatattgataaaggtcttgaaacaagcagcttag
gggcactgtgcagtactatttataaattcccaccgcagatccgtcttgct
tgccattgagtcatgttccaacatcaccgtcatcactttcttaccattta
gggctcttggtagggttttttcccctttcctctgtcagttaaagaattaa
aagtcaagaaaaacaaacaaacaaacaaacaaacaaacaccacttcaaat
atcaagtgcaacaagtagcagcagggaaagatgtcaagacagaccacaga
gtgagctggttaaaagaaaggcttttgctatgggcgagggagcccagaac
aagcacatgcagagaaagtccctgcaggacgagactgggaaggcaaagcc
tgactttctcagcaactggatttcccagtctgaagggtcttcaggcgctt
ctcctggttaggttttccatttgacgaagaaggctgatagatcacaat
gaattccaggtgaagagatgagctttctcagggctgtgttgctgacagat
ctacattgccaaggactgcttcagagaggactgcaagggataccagaaga
gaggctcgaggaaagcgatacaccaccgcaggtccaagtctcacagacct
ggaaacggaggggtgccagtactccttggcaggccatcagtttggtttgg
agcaggctgtcacatttacccttctggatgccagtacactgagggacatc
tcgacctttttgctcagttctctaacctttacaagttgttcatcacagga
caacatgctttgtgtcagcagtagaatgccactgcctgagtggcaccaga
attttgggtgttttctatttctctggtacattttggtagatgaccaagcc
atggatttggtgttcctgtctctcctctcattcctttctggagagagttt
aaatgggctggggaaagatatttgaagctttctgatccaatgtaaatgaa
ccctgtggtgggtaaataactttcctttctcctttgctctcctggggtat
tttaatgaataatgcttctcaaagaagtttataaatattcccccagaggt
aagaagaatattaagctcataggaggtgtgccattaatgctgagtatgtg
ggactgagcgaagaagaaaggaataattacattctcgaggtttcagagtt
gtttctggtaagttttgaaggcgatagctggaacataacactcagagcaa
catcagtgaagtgaggacagtttccccagacccagtccagcaatcccgta
attgcactggctcccacaggtggcagaggatgggatctagcttgttttgt
ggccaattaacagctgtgtgctcataaaccttgtaacaagtaaaaccttt
tacattgtgctctcacgtcaccaaagcctttccaaatatttttgttcctt
tcactcagtactcaaagccctaccctagtctatagtctgtcttgatataa
atagccggcccttcgagatactggatcttacagcatctctttcccacccc
cctgttatactactggaccctgttatggctttatgtttttgatgttcgag
agcctatgtttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_87210421_87211587
seq2: B6Ng01-051F16.b_45_1192

seq1  GAATTCAGGTACTTGGTGATTGCCAAGGAATTCAGATTACCTCACAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTACTTGGTGATTGCCAAGGAATTCAGATTACCTCACAGGCT  50

seq1  GTACACTGTCCAGAATCTGCCACCGCAGCAAGTAGGGGGAAGAGATACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTGTCCAGAATCTGCCACCGCAGCAAGTAGGGGGAAGAGATACCA  100

seq1  GCGACAGAGAGAAGTCCTTCCTAGCCTGTCACTCTCCCTGGCAGGCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACAGAGAGAAGTCCTTCCTAGCCTGTCACTCTCCCTGGCAGGCCTTT  150

seq1  GCTGTTTGTGAAGTCTGAGTCATTTCTGGCTCTGAGGACCAAGGATCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTGTGAAGTCTGAGTCATTTCTGGCTCTGAGGACCAAGGATCAGG  200

seq1  CTGGTAATCCCCTCCCAGACTCTGCAGGGCGCTGCCCAGTAACTGCAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAATCCCCTCCCAGACTCTGCAGGGCGCTGCCCAGTAACTGCAGCG  250

seq1  TTTTGGCAGTTTCCCTGCTGCAGCTGGTTGACAGCAGATCAGAGCTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCAGTTTCCCTGCTGCAGCTGGTTGACAGCAGATCAGAGCTCTCC  300

seq1  GGCTCAGGCCGCCTGTTGTCTTCCATCAGATTTTTCTAGGTCAGGCTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGGCCGCCTGTTGTCTTCCATCAGATTTTTCTAGGTCAGGCTAGG  350

seq1  ATGAAACTCTTGCTTCTGGCAAGAGTGCCTGAGATGAAGTCTCATTGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACTCTTGCTTCTGGCAAGAGTGCCTGAGATGAAGTCTCATTGCCC  400

seq1  GTGACCCCTCTCCGCAGGAAGCTCTACATGCTAAAGATGACTCAGGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCCTCTCCGCAGGAAGCTCTACATGCTAAAGATGACTCAGGTGCT  450

seq1  ACTACTGCAGTCTCCTTGCTTTGTGCATTTGTTCTGAATGTAGAAGATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGCAGTCTCCTTGCTTTGTGCATTTGTTCTGAATGTAGAAGATAT  500

seq1  ACCTACCAAATTGAGTACTTAACTCTTCTATACCTAGGCTCTGTGATGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCAAATTGAGTACTTAACTCTTCTATACCTAGGCTCTGTGATGCC  550

seq1  GACTGACTGTAAGAGTATACACTGTCAGGTGTTCAGGCCACGTCATAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACTGTAAGAGTATACACTGTCAGGTGTTCAGGCCACGTCATAGTT  600

seq1  TGTACGTGAGAGAAGCATTAGTAAGATCTTACTGACTTTGTGCTTGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACGTGAGAGAAGCATTAGTAAGATCTTACTGACTTTGTGCTTGCTTC  650

seq1  CCCCTTGTGCTTCTTCTATATTGATAAAGGTCTTGAAACAAGCAGCTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGTGCTTCTTCTATATTGATAAAGGTCTTGAAACAAGCAGCTTAG  700

seq1  GGGCACTGTGCAGTACTATTTATAAATTCCCACCGCAGATCCGTCTTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACTGTGCAGTACTATTTATAAATTCCCACCGCAGATCCGTCTTGCT  750

seq1  TGCCATTGAGTCATGTTCCAACATCACCGTCATCACTTTCTTACCATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTGAGTCATGTTCCAACATCACCGTCATCACTTTCTTACCATTTA  800

seq1  GGGCTCTTGGTAGGGTTTTTTCCCCTTTCCCTCTGTCAGTTAAAGAATTA  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGGCTCTTGGTAGGGTTTTTTCCCCTTT-CCTCTGTCAGTTAAAGAATTA  849

seq1  AAAGTCAAGAAAAACAAACAAACAAACAAACAAACAAACACCACTTCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAAGAAAAACAAACAAACAAACAAACAAACAAACACCACTTCAAA  899

seq1  TATCAAGTGCAACAAGTAGCAGCAGGGAAAGATGTCAAGACAGACCACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGTGCAACAAGTAGCAGCAGGGAAAGATGTCAAGACAGACCACAG  949

seq1  AGTGAGCTGGTTAAAAGAAAGGCTTTTGCTATGGGCGAGGGAGCCCAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCTGGTTAAAAGAAAGGCTTTTGCTATGGGCGAGGGAGCCCAGAA  999

seq1  CAAGGCACATGCAGAGAAAGTCCCTGCAGGACAGAGACTGGGAAGCCAAA  1050
      ||| |||||||||||||||||||||||||||| |||||||||||| ||||
seq2  CAA-GCACATGCAGAGAAAGTCCCTGCAGGAC-GAGACTGGGAAGGCAAA  1047

seq1  GCCTGGCCTTTCCTCAGCAGCTGGGATTTCCCAGTCTTTGAGGGGTCTTC  1100
      ||||| |  || ||||||| || |||||||||||||  ||| ||||||||
seq2  GCCTGAC--TTTCTCAGCAACT-GGATTTCCCAGTC--TGAAGGGTCTTC  1092

seq1  AAAGGCGCTTCCTCCCTGAGTTTAGGGTTTTCCCATTTGAACGAAGAGAG  1150
        |||||||| ||||    | |||||  ||| ||||||| ||||||| ||
seq2  --AGGCGCTT-CTCC---TGGTTAGG--TTTTCCATTTG-ACGAAGA-AG  1132

seq1  GCTGATAGATCCACAAT  1167
      |||||||||| ||||||
seq2  GCTGATAGAT-CACAAT  1148

seq1: chr12_87365634_87366779
seq2: B6Ng01-051F16.g_68_1180 (reverse)

seq1  TTAAACATATGGGGTCTCTGGAACAATTCAAAAACATTAAAGCCATAACC  50
      |||||||||    | |||| |||||  ||||||||| ||||||||||| |
seq2  TTAAACATA----GGCTCTCGAACA--TCAAAAACA-TAAAGCCATAA-C  42

seq1  AGGGTTCACAGGTAAGTATAACAGGGTGTGTGGGGAAAGGAGATGCTGTT  100
      ||||| ||   || |||||||||||| | |||||  || ||||||||| |
seq2  AGGGTCCA---GT-AGTATAACAGGG-GGGTGGG--AAAGAGATGCTG-T  84

seq1  AAGATCCAGTTGTCTCGAAGGAGGCCGGCTATTTATTATCAGGACAGACT  150
      ||||||||| | ||||||||  ||||||||||||| ||||| ||||||| 
seq2  AAGATCCAG-TATCTCGAAG--GGCCGGCTATTTA-TATCAAGACAGAC-  129

seq1  TATAGACTAGGGGTAGGGCTTTGAGTTACTGAGGTGGAAAGGGAACAAAA  200
      ||||||||| ||||||||||||||| |||||| |||  || ||||| |||
seq2  TATAGACTA-GGGTAGGGCTTTGAG-TACTGA-GTG--AAAGGAAC-AAA  173

seq1  AATATTTTGGAAAGGCTTTGGTGACGTTGAGAGCACAATTGTTAAAAGGT  250
      |||| ||||||||||||||||||||| ||||||||||||   ||||||||
seq2  AATA-TTTGGAAAGGCTTTGGTGACG-TGAGAGCACAAT--GTAAAAGGT  219

seq1  TTTACTTGTTACAAGGTTTTAATGAGCACACAGCTGTTAATTGGCCACAA  300
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  TTTACTTGTTACAAGGTTT--ATGAGCACACAGCTGTTAATTGGCCACAA  267

seq1  AACAAGCTAGATCCCATCCTCTGCCACCTGTGGGAGCCAGTGCAATTACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCTAGATCCCATCCTCTGCCACCTGTGGGAGCCAGTGCAATTACG  317

seq1  GGATTGCTGGACTGGGTCTGGGGAAACTGTCCTCACTTCACTGATGTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCTGGACTGGGTCTGGGGAAACTGTCCTCACTTCACTGATGTTGC  367

seq1  TCTGAGTGTTATGTTCCAGCTATCGCCTTCAAAACTTACCAGAAACAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTGTTATGTTCCAGCTATCGCCTTCAAAACTTACCAGAAACAACT  417

seq1  CTGAAACCTCGAGAATGTAATTATTCCTTTCTTCTTCGCTCAGTCCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACCTCGAGAATGTAATTATTCCTTTCTTCTTCGCTCAGTCCCACA  467

seq1  TACTCAGCATTAATGGCACACCTCCTATGAGCTTAATATTCTTCTTACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGCATTAATGGCACACCTCCTATGAGCTTAATATTCTTCTTACCT  517

seq1  CTGGGGGAATATTTATAAACTTCTTTGAGAAGCATTATTCATTAAAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGAATATTTATAAACTTCTTTGAGAAGCATTATTCATTAAAATAC  567

seq1  CCCAGGAGAGCAAAGGAGAAAGGAAAGTTATTTACCCACCACAGGGTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGAGCAAAGGAGAAAGGAAAGTTATTTACCCACCACAGGGTTCA  617

seq1  TTTACATTGGATCAGAAAGCTTCAAATATCTTTCCCCAGCCCATTTAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTGGATCAGAAAGCTTCAAATATCTTTCCCCAGCCCATTTAAAC  667

seq1  TCTCTCCAGAAAGGAATGAGAGGAGAGACAGGAACACCAAATCCATGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCAGAAAGGAATGAGAGGAGAGACAGGAACACCAAATCCATGGCT  717

seq1  TGGTCATCTACCAAAATGTACCAGAGAAATAGAAAACACCCAAAATTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATCTACCAAAATGTACCAGAGAAATAGAAAACACCCAAAATTCTG  767

seq1  GTGCCACTCAGGCAGTGGCATTCTACTGCTGACACAAAGCATGTTGTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACTCAGGCAGTGGCATTCTACTGCTGACACAAAGCATGTTGTCCT  817

seq1  GTGATGAACAACTTGTAAAGGTTAGAGAACTGAGCAAAAAGGTCGAGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAACAACTTGTAAAGGTTAGAGAACTGAGCAAAAAGGTCGAGATG  867

seq1  TCCCTCAGTGTACTGGCATCCAGAAGGGTAAATGTGACAGCCTGCTCCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAGTGTACTGGCATCCAGAAGGGTAAATGTGACAGCCTGCTCCAA  917

seq1  ACCAAACTGATGGCCTGCCAAGGAGTACTGGCACCCCTCCGTTTCCAGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACTGATGGCCTGCCAAGGAGTACTGGCACCCCTCCGTTTCCAGGT  967

seq1  CTGTGAGACTTGGACCTGCGGTGGTGTATCGCTTTCCTCGAGCCTCTCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGACTTGGACCTGCGGTGGTGTATCGCTTTCCTCGAGCCTCTCTT  1017

seq1  CTGGTATCCCTTGCAGTCCTCTCTGAAGCAGTCCTTGGCAATGTAGATCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTATCCCTTGCAGTCCTCTCTGAAGCAGTCCTTGGCAATGTAGATCT  1067

seq1  GTCAGCAACACAGCCCTGAGAAAGCTCATCTCTTCACCTGGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAACACAGCCCTGAGAAAGCTCATCTCTTCACCTGGAATTC  1113