BAC Information

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BAC

Clone NameB6Ng01-052B16
Chromosome12 (Build37)
Map Location 9,286,038 - 9,391,769
singlet/doubletdoublet
Overlap genenone
Upstream gene1110057K04Rik, Gdf7, Hs1bp3, BC106175, Rhob, Slc7a15, LOC100043154, Pum2, F730043H23, Sdc1, Laptm4a, Matn3, Wdr35, Ttc32
Downstream geneLOC633030, LOC100042238, Osr1, LOC382567, Nt5c1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052B16.bB6Ng01-052B16.g
ACCDH875560DH875561
length4301,115
definitionDH875560|Mus musculus domesticus DNA, BAC clone: B6Ng01-052B16, 5' end.DH875561|Mus musculus domesticus DNA, BAC clone: B6Ng01-052B16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,391,334 - 9,391,769)(9,286,038 - 9,287,183)
sequence
ttatccacacctaaaagagacatcaatggcatgtttctgcactctactgc
tggagcacatgtgtaaataacctgttagcttttctgcccatatggcatac
aggcaaacacacagtttaaatgtagtatgcataatgagttttgtgtgctc
aggggtttctctaactatagctttattataggtaacagaatttctttgat
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gctagtatttttgtgcatgtgaagtcaaaacccctttattactgctactt
gatacttcattgttcactctctgctgccctctggactcagatttctactc
tacctctacaactgaccatatgaattaagcaataatttctgagtaccagt
ctgaagtctgaatcactacccatgctattt
gaattcctcctgctctgagcttggtggtcctgtaacaactgcagagccct
gtggtgcaggggagcctactttttgtgtttgaagacttgcttttaaagat
gagatcctgacagttgttctcctgcccctttctctctctttttctttgtt
ttctcatcttcgtctttcctatttcccaatttgctcattttcatccactt
ctcacatctttaacatctctgttttaactcttttgatagatttatttctg
caaagtttatttctgtgaatacacataaaaatgttcctaccatttgtcat
aagctgtttgtttcagttttatacatccacccgtccatccatctatccac
tgatacagactctcctgttcctatagctcaggctggcctcaaattcccca
ttttagccaaggaggaccttgagcttcttctgatctttcctttttttgct
ttctgagttctaggattgcaggtatggataacatgggtcaccacactcac
tttatttggtgatggggatcaatcaagcctggggctttgtgattgcatgg
taagcactgtattacctgagataatatcctcaggctgcctcacttgtttc
ttttgcctgtgcccacctagtcaggtgctgaagcatcccaactggcctct
actctagggagtcaacttcttcacctatcccaggttttcctgggacctcc
acaggtaaattcagcatccattctcagcagacccagtactcagtctgtgg
gctggctttcgctgacctttgttccagattcagaaaagaggaacggtgac
ccattttattcccacatgggagtaaatagctgagtgtttttatgcccagg
tgtttgccatatagtttgatacaaaaccatgtcctgaaagctataggcca
atctaacatatagaaataactgagtgagatcattattttttattggtacc
acttaatgtgaagaaatgcacattttccaaaatatggaaaacgtctgttg
cctatgggtcaatgttagtttaattattttactatgcacgttcttcatat
ctggcagtggtgattcattttatctttgtatcatatcttatgagatccaa
cacatgctttggatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_9391334_9391769
seq2: B6Ng01-052B16.b_44_479 (reverse)

seq1  AAATAGCATGGGTAGAGATTCAGACATGTGACTGGTACTCAGAAATTATT  50
      ||||||||||||||| ||||||||| |  |||||||||||||||||||||
seq2  AAATAGCATGGGTAGTGATTCAGACTTCAGACTGGTACTCAGAAATTATT  50

seq1  GCTTAATTCATATGGTCAGTTGTAGTGGTAGAGTAGAAATCTGAGTCCAG  100
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCTTAATTCATATGGTCAGTTGTAGAGGTAGAGTAGAAATCTGAGTCCAG  100

seq1  AGGGCAGCAGAGAGTGAACAATGAAGTATCAAGTAGCAGTAATAAAGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGCAGAGAGTGAACAATGAAGTATCAAGTAGCAGTAATAAAGGGG  150

seq1  TTTTGACTTCACATGCACAAAAATACTAGCACACACACACACACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACTTCACATGCACAAAAATACTAGCACACACACACACACACACAC  200

seq1  ACACACACACACACACACACACACACACACATCAAAGAAATTCTGTTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACATCAAAGAAATTCTGTTACC  250

seq1  TATAATAAAGCTATAGTTAGAGAAACCCCTGAGCACACAAAACTCATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAAGCTATAGTTAGAGAAACCCCTGAGCACACAAAACTCATTAT  300

seq1  GCATACTACATTTAAACTGTGTGTTTGCCTGTATGCCATATGGGCAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTACATTTAAACTGTGTGTTTGCCTGTATGCCATATGGGCAGAAA  350

seq1  AGCTAACAGGTTATTTACACATGTGCTCCAGCAGTAGAGTGCAGAAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAACAGGTTATTTACACATGTGCTCCAGCAGTAGAGTGCAGAAACAT  400

seq1  GCCATTGATGTCTCTTTTAGGTGTGGATAAGAATTC  436
      ||||||||||||||||||||||||||||||||||||
seq2  GCCATTGATGTCTCTTTTAGGTGTGGATAAGAATTC  436

seq1: chr12_9286038_9287183
seq2: B6Ng01-052B16.g_69_1183

seq1  GAATTCCTCCTGCTCTGAGCTTGGTGGTCCTGTAACAACTGCAGAGCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTGCTCTGAGCTTGGTGGTCCTGTAACAACTGCAGAGCCCT  50

seq1  GTGGTGCAGGGGAGCCTACTTTTTGTGTTTGAAGACTTGCTTTTAAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCAGGGGAGCCTACTTTTTGTGTTTGAAGACTTGCTTTTAAAGAT  100

seq1  GAGATCCTGACAGTTGTTCTCCTGCCCCTTTCTCTCTCTTTTTCTTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCTGACAGTTGTTCTCCTGCCCCTTTCTCTCTCTTTTTCTTTGTT  150

seq1  TTCTCATCTTCGTCTTTCCTATTTCCCAATTTGCTCATTTTCATCCACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATCTTCGTCTTTCCTATTTCCCAATTTGCTCATTTTCATCCACTT  200

seq1  CTCACATCTTTAACATCTCTGTTTTAACTCTTTTGATAGATTTATTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATCTTTAACATCTCTGTTTTAACTCTTTTGATAGATTTATTTCTG  250

seq1  CAAAGTTTATTTCTGTGAATACACATAAAAATGTTCCTACCATTTGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTTATTTCTGTGAATACACATAAAAATGTTCCTACCATTTGTCAT  300

seq1  AAGCTGTTTGTTTCAGTTTTATACATCCACCCGTCCATCCATCTATCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTTTGTTTCAGTTTTATACATCCACCCGTCCATCCATCTATCCAC  350

seq1  TGATACAGACTCTCCTGTTCCTATAGCTCAGGCTGGCCTCAAATTCCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAGACTCTCCTGTTCCTATAGCTCAGGCTGGCCTCAAATTCCCCA  400

seq1  TTTTAGCCAAGGAGGACCTTGAGCTTCTTCTGATCTTTCCTTTTTTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCCAAGGAGGACCTTGAGCTTCTTCTGATCTTTCCTTTTTTTGCT  450

seq1  TTCTGAGTTCTAGGATTGCAGGTATGGATAACATGGGTCACCACACTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTCTAGGATTGCAGGTATGGATAACATGGGTCACCACACTCAC  500

seq1  TTTATTTGGTGATGGGGATCAATCAAGCCTGGGGCTTTGTGATTGCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGGTGATGGGGATCAATCAAGCCTGGGGCTTTGTGATTGCATGG  550

seq1  TAAGCACTGTATTACCTGAGATAATATCCTCAGGCTGCCTCACTTGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACTGTATTACCTGAGATAATATCCTCAGGCTGCCTCACTTGTTTC  600

seq1  TTTTGCCTGTGCCCACCTAGTCAGGTGCTGAAGCATCCCAACTGGCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCTGTGCCCACCTAGTCAGGTGCTGAAGCATCCCAACTGGCCTCT  650

seq1  ACTCTAGGGAGTCAACTTCTTCACCTATCCCAGGTTTTCCTGGGACCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGGGAGTCAACTTCTTCACCTATCCCAGGTTTTCCTGGGACCTCC  700

seq1  ACAGGTAAATTCAGCATCCATTCTCAGCAGACCCAGTACTCAGTCTGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAAATTCAGCATCCATTCTCAGCAGACCCAGTACTCAGTCTGTGG  750

seq1  GCTGGCTTTCGCTGACCTTTGTTCCAGATTCAGAAAAGAGGAACGGTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTTTCGCTGACCTTTGTTCCAGATTCAGAAAAGAGGAACGGTGAC  800

seq1  CCATTTTATTCCCACATGGAAGTAAATAGCTGAGTGTTTTTATGCCCAGG  850
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCATTTTATTCCCACATGGGAGTAAATAGCTGAGTGTTTTTATGCCCAGG  850

seq1  TGTTTGCCATATAGTTTGATACAAAACCATGTCCTGGAAAGCTATAGGCC  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTTTGCCATATAGTTTGATACAAAACCATGTCCT-GAAAGCTATAGGCC  899

seq1  AATCTAACATATAGAAATAAACTGAGTGAGAATCATTATTTTTTATTGGT  950
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  AATCTAACATATAGAAAT-AACTGAGTGAG-ATCATTATTTTTTATTGGT  947

seq1  ACCACTTAATGTGAAGAAAATGCACATTTTCCAAAAATATGGAAAAAACG  1000
      |||||||||||||||| ||||||||||||||| |||||||||  ||||||
seq2  ACCACTTAATGTGAAG-AAATGCACATTTTCC-AAAATATGG--AAAACG  993

seq1  TTCTGTTTGCCTTATTGGGTCCAAATGTTAGGTTTAAATTATTTTACTAT  1050
       |||| ||||||   ||||||  ||||||||  || ||||||||||||||
seq2  -TCTG-TTGCCT--ATGGGTC--AATGTTAG--TTTAATTATTTTACTAT  1035

seq1  GCAAACGTTCTTTCATATCTTGGCAGTGGTGATTTCCATTTTTATTCCTT  1100
      ||  |||||| |||||||| ||||||||||||||  || ||||||  |||
seq2  GC--ACGTTC-TTCATATC-TGGCAGTGGTGATT--CA-TTTTAT--CTT  1076

seq1  TGGTATCCATAATCTTATGAGAATCAAAACCACATGCTTTGAGATC  1146
      | |||| ||| |||||||||||  |||   ||||||||||| ||||
seq2  T-GTAT-CAT-ATCTTATGAGATCCAA---CACATGCTTTG-GATC  1115