BAC Information

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BAC

Clone NameB6Ng01-052J09
Chromosome12 (Build37)
Map Location 45,906,377 - 46,012,267
singlet/doubletdoublet
Overlap geneStxbp6
Upstream geneENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052J09.bB6Ng01-052J09.g
ACCDH875895DH875896
length8371,113
definitionDH875895|Mus musculus domesticus DNA, BAC clone: B6Ng01-052J09, 5' end.DH875896|Mus musculus domesticus DNA, BAC clone: B6Ng01-052J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,011,432 - 46,012,267)(45,906,377 - 45,907,506)
sequence
gaattctcttatcacttgcctagccctggactcatgctctaatgtggaca
tggattgggtttttggttgttaatttgcagaaacagtaacataaatttat
aaaaaaaattaagtgtttgtgtaatagaattttcatgcacacattaataa
aaatatagtatgagataaaagatgcccaaaagtagcataaagtcaacttg
tttatatggcaattgcttgttacatgtttagagttcaaggccagcttagt
ctacagagctagttctgggatacccaaagctacacaaagaaatcctatct
caaaaaacaaaacaaaacaaacaagcaaaaaagataagttgtatgtatgt
caggcaggcaaaatgcaggtgttttgtcttgttttgtcttgggagttatg
cagaaatgatcctgtgaatcatgagactagagaaagttatgcagatgttt
gagaaaagttgtcattttcaaccaatatttcttgaaattgaaggtttgtg
ccaccatcattggtagccttttatcttgcataatattcaagacatgtcca
tttatgtctgtccttttctccttagtctgtttgcttccttccaagagaac
tttcctccaagaccaggtttgatatgattaaccagggctttttgatggat
tgatagtagcagtattggctcctcctcttcctcttcctcttcctcttcct
cttcctcttctttccttctcaagacatgggctttactatgtaggtcatga
tggccaagaactcactatgtagcctaagctggccttgaacttagtgattc
ttctgcctccatcttccaaatgctagacatagaagtg
gaattctggggacttttcagaggatatagaaatgctaagccttcaagagg
tggtatggattgttggttgtttgctgtttgctattggttgttgtttgttg
ctgatgggtgatgttggtcactgttaagtagttgtgcataaagaagaaag
aagaaattagatatcttgatcttgaagatcaaactttccccaagtaactt
gatgcccctaattagcaggaagtagtctaacaataatgtcacttcctttc
cccctctatccttttttctcttatctagcttgagggtattaaaagaatgg
aagaaaaggggtggaaatgggtgaaaaagaaagaacccacaaagtagcca
aagacaggctacagggacccatgcccaaaaagttgtttacaaacctcaaa
cattacctagccctataatcttatctcttttcttttttctttgttttctt
atcttttctattctgttctcttttcttttcctttctccttctttctctct
tttcttctttttcttgaagatagagaaaattagaattacagaaagaaaaa
tgactggttcaaagttgttaaactaaatggaataaaccaccattggcacg
ttatatccaaaccctcaattctatttccgaaccaggaatcattatttttt
atttaacttattgtgtatgccggaataaatcagaaagaaaaggatatgtt
caaagtaggctgaagagcagaatttagatgtctttgtgaggcaggcaagt
gtaggcagagcaactcagtattaatagactgggaatacatatatcctgat
cccaaaaatccatgttgcaacctgttctaagcaacagcacatgctatttt
acgtaaagtgaccaggttaccatgctattcagctctccatcactcttagt
aaactgctttgtgtgaaacatatctgaaatgaggagtaatggcctaatcc
agcctagactagtttaaggttgagtgcataacaagaaatgtcctcccatg
gaggagctagagaaagtacccaggagctaagggatctgcacccttatagt
gggaaaacatatgactaccagtaccccgagctcggtctctagctgcatgt
tatcaaagatggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_46011432_46012267
seq2: B6Ng01-052J09.b_47_883 (reverse)

seq1  CACTTCTATGTCTAGCATTTGGAAGATGGAGGCAGGAGAATCACTAAGTT  50
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CACTTCTATGTCTAGCATTTGGAAGATGGAGGCAGAAGAATCACTAAGTT  50

seq1  CAAGGCCAGCTTAGGCTACATAGTGAGTTCTTGGCCATCATGACCTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCAGCTTAGGCTACATAGTGAGTTCTTGGCCATCATGACCTACAT  100

seq1  AGTAAAG-CCATGTCTTGAGAAGGAAAGAAGAGGAAGAGGAAGAGGAAGA  149
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGCCCATGTCTTGAGAAGGAAAGAAGAGGAAGAGGAAGAGGAAGA  150

seq1  GGAAGAGGAAGAGGAGGAGCCAATACTGCTACTATCAATCCATCAAAAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGAAGAGGAGGAGCCAATACTGCTACTATCAATCCATCAAAAAG  200

seq1  CCCTGGTTAATCATATCAAACCTGGTCTTGGAGGAAAGTTCTCTTGGAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTTAATCATATCAAACCTGGTCTTGGAGGAAAGTTCTCTTGGAAG  250

seq1  GAAGCAAACAGACTAAGGAGAAAAGGACAGACATAAATGGACATGTCTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAACAGACTAAGGAGAAAAGGACAGACATAAATGGACATGTCTTG  300

seq1  AATATTATGCAAGATAAAAGGCTACCAATGATGGTGGCACAAACCTTCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATGCAAGATAAAAGGCTACCAATGATGGTGGCACAAACCTTCAA  350

seq1  TTTCAAGAAATATTGGTTGAAAATGACAACTTTTCTCAAACATCTGCATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGAAATATTGGTTGAAAATGACAACTTTTCTCAAACATCTGCATA  400

seq1  ACTTTCTCTAGTCTCATGATTCACAGGATCATTTCTGCATAACTCCCAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCTAGTCTCATGATTCACAGGATCATTTCTGCATAACTCCCAAG  450

seq1  ACAAAACAAGACAAAACACCTGCATTTTGCCTGCCTGACATACATACAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAGACAAAACACCTGCATTTTGCCTGCCTGACATACATACAAC  500

seq1  TTATCTTTTTTGCTTGTTTGTTTTGTTTTGTTTTTTGAGATAGGATTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTTTTGCTTGTTTGTTTTGTTTTGTTTTTTGAGATAGGATTTCT  550

seq1  TTGTGTAGCTTTGGGTATCCCAGAACTAGCTCTGTAGACTAAGCTGGCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAGCTTTGGGTATCCCAGAACTAGCTCTGTAGACTAAGCTGGCCT  600

seq1  TGAACTCTAAACATGTAACAAGCAATTGCCATATAAACAAGTTGACTTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCTAAACATGTAACAAGCAATTGCCATATAAACAAGTTGACTTTA  650

seq1  TGCTACTTTTGGGCATCTTTTATCTCATACTATATTTTTATTAATGTGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTTTTGGGCATCTTTTATCTCATACTATATTTTTATTAATGTGTG  700

seq1  CATGAAAATTCTATTACACAAACACTTAATTTTTTTTATAAATTTATGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAATTCTATTACACAAACACTTAATTTTTTTTATAAATTTATGTT  750

seq1  ACTGTTTCTGCAAATTAACAACCAAAAACCCAATCCATGTCCACATTAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTCTGCAAATTAACAACCAAAAACCCAATCCATGTCCACATTAGA  800

seq1  GCATGAGTCCAGGGCTAGGCAAGTGATAAGAGAATTC  836
      |||||||||||||||||||||||||||||||||||||
seq2  GCATGAGTCCAGGGCTAGGCAAGTGATAAGAGAATTC  837

seq1: chr12_45906377_45907506
seq2: B6Ng01-052J09.g_66_1178

seq1  GAATTCTGGGGACTTTTCAGAGGATATAGAAATGCTAAGCCTTCAAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGACTTTTCAGAGGATATAGAAATGCTAAGCCTTCAAGAGG  50

seq1  TGGTATGGATTGTTGGTTGTTTGCTGTTTGCTATTGGTTGTTGTTTGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGGATTGTTGGTTGTTTGCTGTTTGCTATTGGTTGTTGTTTGTTG  100

seq1  CTGATGGGTGATGTTGGTCACTGTTAAGTAGTTGTGCATAAAGAAGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGGTGATGTTGGTCACTGTTAAGTAGTTGTGCATAAAGAAGAAAG  150

seq1  AAGAAATTAGATATCTTGATCTTGAAGATCAAACTTTCCCCAAGTAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTAGATATCTTGATCTTGAAGATCAAACTTTCCCCAAGTAACTT  200

seq1  GATGCCCCTAATTAGCAGGAAGTAGTCTAACAATAATGTCACTTCCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCCTAATTAGCAGGAAGTAGTCTAACAATAATGTCACTTCCTTTC  250

seq1  CCCCTCTATCCTTTTTTCTCTTATCTAGCTTGAGGGTATTAAAAGAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTATCCTTTTTTCTCTTATCTAGCTTGAGGGTATTAAAAGAATGG  300

seq1  AAGAAAAGGGGTGGAAATGGGTGAAAAAGAAAGAACCCACAAAGTAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGGGGTGGAAATGGGTGAAAAAGAAAGAACCCACAAAGTAGCCA  350

seq1  AAGACAGGCTACAGGGACCCATGCCCAAAAAGTTGTTTACAAACCTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGCTACAGGGACCCATGCCCAAAAAGTTGTTTACAAACCTCAAA  400

seq1  CATTACCTAGCCCTATAATCTTATCTCTTTTCTTTTTTCTTTGTTTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCTAGCCCTATAATCTTATCTCTTTTCTTTTTTCTTTGTTTTCTT  450

seq1  ATCTTTTCTATTCTGTTCTCTTTTCTTTTCCTTTCTCCTTCTTTCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTCTATTCTGTTCTCTTTTCTTTTCCTTTCTCCTTCTTTCTCTCT  500

seq1  TTTCTTCTTTTTCTTGAAGATAGAGAAAATTAGAATTACAGAAAGAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTTTTTCTTGAAGATAGAGAAAATTAGAATTACAGAAAGAAAAA  550

seq1  TGACTGGTTCAAAGTTGTTAAACTAAATGGAATAAACCACCATTGGCACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGTTCAAAGTTGTTAAACTAAATGGAATAAACCACCATTGGCACG  600

seq1  TTATATCCAAACCCTCAATTCTATTTCCGAACCAGGAATCATTATTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCCAAACCCTCAATTCTATTTCCGAACCAGGAATCATTATTTTTT  650

seq1  ATTTAACTTATTGTGTATGCCGGAATAAATCAGAAAGAAAAGGATATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACTTATTGTGTATGCCGGAATAAATCAGAAAGAAAAGGATATGTT  700

seq1  CAAAGTAGGCTGAAGAGCAGAATTTAGATGTCTTTGTGAGGCAGGCAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAGGCTGAAGAGCAGAATTTAGATGTCTTTGTGAGGCAGGCAAGT  750

seq1  GTAGGCAGAGCAACTCAGTATTAATAGACTGGGAATACATATATCCTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCAGAGCAACTCAGTATTAATAGACTGGGAATACATATATCCTGAT  800

seq1  CCCAAAAATCCATGTTGCAACCTGTTCTAAGCAACAGCACATGCTATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAATCCATGTTGCAACCTGTTCTAAGCAACAGCACATGCTATTTT  850

seq1  ACGTAAAGTGACCAGGTTACCATGCTATTCAGCTCTCCATCAACTCTTAG  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACGTAAAGTGACCAGGTTACCATGCTATTCAGCTCTCCATC-ACTCTTAG  899

seq1  TAAACTGCTTTGTGGTGAAACATATCTTGAAATGAGGAGTAATGGCCTAA  950
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  TAAACTGCTTTGT-GTGAAACATATC-TGAAATGAGGAGTAATGGCCTAA  947

seq1  TCCAGCCTAGACTAGTTTAAGGTTTGAGTGCAATAACAAGATATGTCCCC  1000
      |||||||||||||||||||||| |||||||| ||||||||| |||||| |
seq2  TCCAGCCTAGACTAGTTTAAGG-TTGAGTGC-ATAACAAGAAATGTCCTC  995

seq1  CCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAC  1050
      || |||||||||||||||||||||||| ||||||| |||||||||||| |
seq2  CC-ATGGAGGAGCTAGAGAAAGTACCC-AGGAGCT-AAGGGATCTGCACC  1042

seq1  CCTATAGGTGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCGTG  1100
      | |||| |||| | ||| ||||| ||| |||||||||||  ||||||| |
seq2  CTTATA-GTGGGAAAAC-ATATG-ACT-ACCAGTACCCC--GAGCTCG-G  1085

seq1  TCTCTAGCTGCATATGTATCAGAAGATGGC  1130
      ||||||||||||| | ||||| ||||||||
seq2  TCTCTAGCTGCATGT-TATCA-AAGATGGC  1113