BAC Information

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BAC

Clone NameB6Ng01-053D19
Chromosome12 (Build37)
Map Location 107,998,226 - 108,043,030
singlet/doubletdoublet
Overlap genenone
Upstream geneAk7, Papola, Vrk1, LOC100040386, LOC100040404, LOC100040420, 1700121N20Rik, LOC100041191, LOC100040451
Downstream geneLOC673604, LOC100040484, LOC382635, LOC100041251, LOC100040497, LOC668151
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053D19.bB6Ng01-053D19.g
ACCDH876344DH876345
length1,0641,186
definitionDH876344|Mus musculus domesticus DNA, BAC clone: B6Ng01-053D19, 5' end.DH876345|Mus musculus domesticus DNA, BAC clone: B6Ng01-053D19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,998,226 - 107,999,088)(108,041,845 - 108,043,030)
sequence
gaattcagcctcttcagacttctagaacacaggggggagattctttgcaa
taatataaaacaaaatatctcttgcccaatactcaaaggttttttttttt
tttcttagctgacccatgaggtgaatcttcactaccaacatttttcttga
cattctgatcttcaaattttccaccagaaattgccatttaacttacagca
ttgtagggttttgttttgtttttaatattcacctctatactgttctacat
tcctcccataaactcattccagcctaagaatgacacagccaagtttgtca
agtgacccccttactgctcatttcaattttcttatcaggaagttttgccc
atctctatggtcaagtacctgacagaaacaagtgaatggaggagggattt
gttttggcatagagtttaaaagtattttagtctatcacgtcaggggatga
cagcatattctattgggatagtactgtatgatatagttcctcagttggca
tctagaccaggaagtagagacagacaagaaccagaagcaggcatatgcct
caaaggtcagccccctgtggctcacctcattcagtcatgcctactattgt
aaagtttctacaacatatcatgacagagctactatctagggatggagtat
tcaaacaggagcctggatgggacatttcaccttcaaactgtagcatggcc
aaaacttaaatggattaaagaattaaaggaacaaaacaaaaaacaattta
aagaaacaaagcagctgaattggatttaaaaaacaatagttcagctatgt
gttgctaatatttctaaggatatttgtattcagaagagaaaaggtggaga
aaggtattccatgcaatgctggggagatggcttagtgactgggagtattt
tctgctcttctatgggattggaagttcagttctcagcattcttactggct
tgtttcacactacctgttactccagacgatctgatgttccttttgacctc
tggtgagcacctgtacattttgtgcacatactggcccatccactctacca
cactaaataataaa
gaattctgggtaccaggcaaccatttaaaataatatacagcaactctata
acagaagagctcatagctatgaaatatcacaccttagaagactattggtt
agggaaatgaacactcacaaaaacaggctacaatatagctagcaaacact
atataatttcaatttcttaaaaagaaaaaaaaaaaactcatgttcctgtc
agcagctagagatgcaccaaaatgtagtcatgattatttctgaggaatca
aaacatactttgtttcagaattcacattcccatctttgcttttcaaattt
tgctcatgaatatattttttctattaactctcagaaaagagataataaat
actgtcgaaaacatgctaaaatgtaaaaggaacaaacaagttggcaaata
atgcctgaaacataaagacaagatattaatatccttaatctagaaagaga
acttataaattaatgaaaaaaataattccaatatgttcccaggtaaagac
aacaaacagaaaacacattcataacaaaactccacagcccaaaaggatgt
tcaagtagataataagtgtgaagaatatttatttcagtgactaagccaag
aagaacagcagaacaaagatcagatggattcggtgcacaatgcagcaagc
tcagaggtgcacccgagtacagcctcatcctacccagcgtctctttatct
tttctctctttctgatgtcattttcttctgtaatgtaaacactgcaaatt
tgcccaactcaagtaaatagcatctcactcatgatcatgtaagcaagtca
ttaaactcaggagtacacgcacacacacacacacacacacacacatacac
acacacacaatgcatgcacccatgtacatgcgtgctcgtgtgcacatgca
cacacaggtacacttacactccttcccaaaagtcttgagaggaggagagg
aagttgtttcagttgcagtaggaaagtctgtaagtgtcaggaagggagta
gaaatgacaaaattcattatattatcatattaaactgtcaaagaataaaa
atataaggtagtctcttctgcattgttacgctgtcaatttgaatgacatt
atgccgataatggctgaggaacaatgacttcgttcttgggtgccaaggcg
ttgagagaagcttaattgcctatcctttttttagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_107998226_107999088
seq2: B6Ng01-053D19.b_244_1108

seq1  ATTGTAGGGTTTTGTTTTGTTTTTAATATTCACCTCTATACTGTTCTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGGGTTTTGTTTTGTTTTTAATATTCACCTCTATACTGTTCTACA  50

seq1  TTCCTCCCATAAACTCATTCCAGCCTAAGAATGACACAGCCAAGTTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCCATAAACTCATTCCAGCCTAAGAATGACACAGCCAAGTTTGTC  100

seq1  AAGTGACCCCCTTACTGCTCATTTCAATTTTCTTATCAGGAAGTTTTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACCCCCTTACTGCTCATTTCAATTTTCTTATCAGGAAGTTTTGCC  150

seq1  CATCTCTATGGTCAAGTACCTGACAGAAACAAGTGAATGGAGGAGGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTATGGTCAAGTACCTGACAGAAACAAGTGAATGGAGGAGGGATT  200

seq1  TGTTTTGGCATAGAGTTTAAAAGTATTTTAGTCTATCACGTCAGGGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGCATAGAGTTTAAAAGTATTTTAGTCTATCACGTCAGGGGATG  250

seq1  ACAGCATATTCTATTGGGATAGTACTGTATGATATAGTTCCTCAGTTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATATTCTATTGGGATAGTACTGTATGATATAGTTCCTCAGTTGGC  300

seq1  ATCTAGACCAGGAAGTAGAGACAGACAAGAACCAGAAGCAGGCATATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGACCAGGAAGTAGAGACAGACAAGAACCAGAAGCAGGCATATGCC  350

seq1  TCAAAGGTCAGCCCCCTGTGGCTCACCTCATTCAGTCATGCCTACTATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGTCAGCCCCCTGTGGCTCACCTCATTCAGTCATGCCTACTATTG  400

seq1  TAAAGTTTCTACAACATATCATGACAGAGCTACTATCTAGGGATGGAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTCTACAACATATCATGACAGAGCTACTATCTAGGGATGGAGTA  450

seq1  TTCAAACAGGAGCCTGGATGGGACATTTCACCTTCAAACTGTAGCATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACAGGAGCCTGGATGGGACATTTCACCTTCAAACTGTAGCATGGC  500

seq1  CAAAACTTAAATGGATTAAAGAATTAAAGGAACAAAACAAAAAACAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTAAATGGATTAAAGAATTAAAGGAACAAAACAAAAAACAATTT  550

seq1  AAAGAAACAAAGCAGCTGAATTGGATTTAAAAAACAATAGTTCAGCTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACAAAGCAGCTGAATTGGATTTAAAAAACAATAGTTCAGCTATG  600

seq1  TGTTGCTAATATTTCTAAGGATATTTGTATTCAGAAGAGAAAAGGTGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTAATATTTCTAAGGATATTTGTATTCAGAAGAGAAAAGGTGGAG  650

seq1  AAAGGTATTCCATGCAATGCTGGGGAGATGGCTTAGTGACTGGGAGTAAT  700
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAGGTATTCCATGCAATGCTGGGGAGATGGCTTAGTGACTGGGAGTATT  700

seq1  TTCTGCTCTTCTATGGGATTGG-AGTTCAGTTCTCAGCATTCTTACTGGC  749
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTCTGCTCTTCTATGGGATTGGAAGTTCAGTTCTCAGCATTCTTACTGGC  750

seq1  -TGTTTCACAACTACCTGTAACTCCAGACGATCTGATGTTCCTTTTTGAC  798
       |||||||| ||||||||| |||||||||||||||||||||| |||||||
seq2  TTGTTTCAC-ACTACCTGTTACTCCAGACGATCTGATGTTCC-TTTTGAC  798

seq1  CTCT-GTGAGCACCTGTACA-TATGTGCACATACTGGCCCATCCACCCAA  846
      |||| ||||||||||||||| | ||||||||||||||||||||||| | |
seq2  CTCTGGTGAGCACCTGTACATTTTGTGCACATACTGGCCCATCCACTCTA  848

seq1  CACACA-TAAATAATAAA  863
      | |||| |||||||||||
seq2  C-CACACTAAATAATAAA  865

seq1: chr12_108041845_108043030
seq2: B6Ng01-053D19.g_67_1252 (reverse)

seq1  TTCTAAAAAAAAGGATAAGCAAATATAG--ACTCTCAACGCCTTGGCA-C  47
      |||| |||||||||||| |||| || ||   ||||||||||||||||| |
seq2  TTCT-AAAAAAAGGATAGGCAATTA-AGCTTCTCTCAACGCCTTGGCACC  48

seq1  CAAGAACTGAGTCATTTGTCCTCAG-CAATATCGAC-TAATGTCATTCAA  95
      |||||||  |||||||  ||||||| || ||||| | ||||||||||| |
seq2  CAAGAACGAAGTCATTGTTCCTCAGCCATTATCGGCATAATGTCATTC-A  97

seq1  AATTGACAGCGTAACAATGCAAGAGAGACTACCTTATATTTTTATTCTTT  145
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  AATTGACAGCGTAACAATGCAGAAGAGACTACCTTATATTTTTATTCTTT  147

seq1  GACAGTTTCATATGAATATATAATGAATTTTTGTCATTTCTACTCCCTTC  195
      |||||||| ||||||  |||||||||| ||||||||||||||||||||||
seq2  GACAGTTTAATATGATAATATAATGAA-TTTTGTCATTTCTACTCCCTTC  196

seq1  CTGACACTTACAGACTTTCCTACCTGC-ACTGAAACAACTTCCTCTCCTC  244
      |||||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  CTGACACTTACAGACTTTCCTA-CTGCAACTGAAACAACTTCCTCTCCTC  245

seq1  CTCTCAAGACTTTTTGGGAAGGAGTGTAAGTGTACCTGTGTGTGCATGTG  294
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAGAC-TTTTGGGAAGGAGTGTAAGTGTACCTGTGTGTGCATGTG  294

seq1  CACACGAGCACGCATGTACATGGGTGCATGCATTGTGTGTGTGTGTATGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGAGCACGCATGTACATGGGTGCATGCATTGTGTGTGTGTGTATGT  344

seq1  GTGTGTGTGTGTGTGTGTGTGTGCGTGTACTCCTGAGTTTAATGACTTGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGCGTGTACTCCTGAGTTTAATGACTTGC  394

seq1  TTACATGATCATGAGTGAGATGCTATTTACTTGAGTTGGGCAAATTTGCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGATCATGAGTGAGATGCTATTTACTTGAGTTGGGCAAATTTGCA  444

seq1  GTGTTTACATTACAGAAGAAAATGACATCAGAAAGAGAGAAAAGATAAAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTACATTACAGAAGAAAATGACATCAGAAAGAGAGAAAAGATAAAG  494

seq1  AGACGCTGGGTAGGATGAGGCTGTACTCGGGTGCACCTCTGAGCTTGCTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGCTGGGTAGGATGAGGCTGTACTCGGGTGCACCTCTGAGCTTGCTG  544

seq1  CATTGTGCACCGAATCCATCTGATCTTTGTTCTGCTGTTCTTCTTGGCTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGCACCGAATCCATCTGATCTTTGTTCTGCTGTTCTTCTTGGCTT  594

seq1  AGTCACTGAAATAAATATTCTTCACACTTATTATCTACTTGAACATCCTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGAAATAAATATTCTTCACACTTATTATCTACTTGAACATCCTT  644

seq1  TTGGGCTGTGGAGTTTTGTTATGAATGTGTTTTCTGTTTGTTGTCTTTAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTGTGGAGTTTTGTTATGAATGTGTTTTCTGTTTGTTGTCTTTAC  694

seq1  CTGGGAACATATTGGAATTATTTTTTTCATTAATTTATAAGTTCTCTTTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAACATATTGGAATTATTTTTTTCATTAATTTATAAGTTCTCTTTC  744

seq1  TAGATTAAGGATATTAATATCTTGTCTTTATGTTTCAGGCATTATTTGCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTAAGGATATTAATATCTTGTCTTTATGTTTCAGGCATTATTTGCC  794

seq1  AACTTGTTTGTTCCTTTTACATTTTAGCATGTTTTCGACAGTATTTATTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTTTGTTCCTTTTACATTTTAGCATGTTTTCGACAGTATTTATTA  844

seq1  TCTCTTTTCTGAGAGTTAATAGAAAAAATATATTCATGAGCAAAATTTGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTCTGAGAGTTAATAGAAAAAATATATTCATGAGCAAAATTTGA  894

seq1  AAAGCAAAGATGGGAATGTGAATTCTGAAACAAAGTATGTTTTGATTCCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAAGATGGGAATGTGAATTCTGAAACAAAGTATGTTTTGATTCCT  944

seq1  CAGAAATAATCATGACTACATTTTGGTGCATCTCTAGCTGCTGACAGGAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATAATCATGACTACATTTTGGTGCATCTCTAGCTGCTGACAGGAA  994

seq1  CATGAGTTTTTTTTTTTTCTTTTTAAGAAATTGAAATTATATAGTGTTTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTTTTTTTTTTTTCTTTTTAAGAAATTGAAATTATATAGTGTTTG  1044

seq1  CTAGCTATATTGTAGCCTGTTTTTGTGAGTGTTCATTTCCCTAACCAATA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTATATTGTAGCCTGTTTTTGTGAGTGTTCATTTCCCTAACCAATA  1094

seq1  GTCTTCTAAGGTGTGATATTTCATAGCTATGAGCTCTTCTGTTATAGAGT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTAAGGTGTGATATTTCATAGCTATGAGCTCTTCTGTTATAGAGT  1144

seq1  TGCTGTATATTATTTTAAATGGTTGCCTGGTACCCAGAATTC  1186
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTATATTATTTTAAATGGTTGCCTGGTACCCAGAATTC  1186