BAC Information

Click to search

BAC

Clone NameB6Ng01-053D21
Chromosome12 (Build37)
Map Location 89,163,756 - 89,360,803
singlet/doubletdoublet
Overlap geneLOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350
Upstream geneLOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076
Downstream geneLOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053D21.bB6Ng01-053D21.g
ACCDH876348DH876349
length890985
definitionDH876348|Mus musculus domesticus DNA, BAC clone: B6Ng01-053D21, 5' end.DH876349|Mus musculus domesticus DNA, BAC clone: B6Ng01-053D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,163,756 - 89,164,643)(89,359,818 - 89,360,803)
sequence
gaattcaggccagggtggctcagctagcaaagtggtgagagtgatgtgaa
caggccttcccactgcaaggggaaggctttttgttgttgttgttgttgtt
ttaagatatattttagcctgtgtgtgcatgtgaccatgtgtgtctgtgtc
tctgtgtatacccctacattctctgatactcaatctagccccttatagca
cattatcagacaaactattatgacttgaaataacttaaattatctcttca
attggtgttatctgtatgctgctagactataaaatgtaggacagcaagtg
tctggattcacagtgcctgtcttagatagagttttattgttttgaaggta
catcataactagaaaaatcttacaaagcaaacatttaaatggggctggct
tacagtttcagaggtttaatccattatcattaatattatggcaggaagca
tggcagcatgcaggcagatatgctgctgcagaagtagctgagagttgtat
atttttatctgaaggcagccaggagagtatcttccacattgggaataact
ttagtgtgtatatataagacctcaaaacccacttccactgtgacatactt
cctccaaagaggccacacctactctaataaggccgtcgtacctcctaata
atgctttctccctatgggtccagcattcaaacacatgagtctatggggtc
caaacctattaaaaccaacactgcctgacatataatcagtatttccatat
gaaggcaggatgttaacaagagacaaagtctctgtgttttgcagatggag
agcttcatttggctaaagtggggaaggaaagtgataattgaagaaatgtc
tgatatttgtgtcctgttctgaacccttaggaaggacaga
gaattcaaatcattcattaaaaagaaataaaaaagacatagaccaaaaaa
actggcatgtaggactgaaagaaagtgatggtgctggatcaaagacactg
actgtatgtatattaagggcctgggagagaaagtttgttagctgagtcat
caacaactcccttaacatagtaaattactcacatctgtagatttttacag
gagacagggtctctgagtttaccatattgaaagaccccaaacctcggtca
gtggtacctaaagacaccccgagtgaaacacagatcgatgcaaaacaaaa
ggtttgggctcgagagatggctcagtggttatgagcactgactgctcttc
tgaaggtccgaatttcaaattccagcaaccaaatggtaactcaaaccatc
tgtaaagagatctgacaccctcctctgatgcatctgaagacacctacagt
gtacttacatataatgaataaatcttttataaacatttcacgagcacagg
ttacataagcaaaaatacagttcttattggctaagcatgttgacctttaa
atctattggctaccaagaatgacacccacttgaactccccctccctatgc
ccactgtaaccctaaatgtaaaagagaaagagactagggtttttttgctg
gtaattaaaaagattcaacattctatactgctaaaacctgaagataatgt
ctctttcatcagtttataaatgacttcccagtggcaacagaatcgaaatg
aaaacataaggccttcttagagtccctaaaaatatcagatgaattgcaag
aagaaggaagactaaagagtggacgattgtggacgattcaatcctattta
gaggagaaataaaataatcatgggaggtagagggttggagggcctcatga
ggaagagaagagggataccggtaggggcaggatcagatttaggctgagat
gaatgagatgcttgtttctgttcaggaaattgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_89163756_89164643
seq2: B6Ng01-053D21.b_43_932

seq1  GAATTCAGGCCAGGGTGGCTCAGCTAGCAAAGTGGTGAGAGTGATGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCCAGGGTGGCTCAGCTAGCAAAGTGGTGAGAGTGATGTGAA  50

seq1  CAGGCCTTCCCACTGCAAGGGGAAGGCTTTTTGTTGTTGTTGTTGTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTTCCCACTGCAAGGGGAAGGCTTTTTGTTGTTGTTGTTGTTGTT  100

seq1  TTAAGATATATTTTAGCCTGTGTGTGCATGTGACCATGTGTGTCTGTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATATATTTTAGCCTGTGTGTGCATGTGACCATGTGTGTCTGTGTC  150

seq1  TCTGTGTATACCCCTACATTCTCTGATACTCAATCTAGCCCCTTATAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTATACCCCTACATTCTCTGATACTCAATCTAGCCCCTTATAGCA  200

seq1  CATTATCAGACAAACTATTATGACTTGAAATAACTTAAATTATCTCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCAGACAAACTATTATGACTTGAAATAACTTAAATTATCTCTTCA  250

seq1  ATTGGTGTTATCTGTATGCTGCTAGACTATAAAATGTAGGACAGCAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGTTATCTGTATGCTGCTAGACTATAAAATGTAGGACAGCAAGTG  300

seq1  TCTGGATTCACAGTGCCTGTCTTAGATAGAGTTTTATTGTTTTGAAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATTCACAGTGCCTGTCTTAGATAGAGTTTTATTGTTTTGAAGGTA  350

seq1  CATCATAACTAGAAAAATCTTACAAAGCAAACATTTAAATGGGGCTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAACTAGAAAAATCTTACAAAGCAAACATTTAAATGGGGCTGGCT  400

seq1  TACAGTTTCAGAGGTTTAATCCATTATCATTAATATTATGGCAGGAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTTCAGAGGTTTAATCCATTATCATTAATATTATGGCAGGAAGCA  450

seq1  TGGCAGCATGCAGGCAGATATGCTGCTGCAGAAGTAGCTGAGAGTTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCATGCAGGCAGATATGCTGCTGCAGAAGTAGCTGAGAGTTGTAT  500

seq1  ATTTTTATCTGAAGGCAGCCAGGAGAGTATCTTCCACATTGGGAATAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATCTGAAGGCAGCCAGGAGAGTATCTTCCACATTGGGAATAACT  550

seq1  TTAGTGTGTATATATAAGACCTCAAAACCCACTTCCACTGTGACATACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTGTATATATAAGACCTCAAAACCCACTTCCACTGTGACATACTT  600

seq1  CCTCCAAAGAGGCCACACCTACTCTAATAAGGCCGTCGTACCTCCTAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAAGAGGCCACACCTACTCTAATAAGGCCGTCGTACCTCCTAATA  650

seq1  ATGCTTTCTCCCTATGGGTCCAGCATTCAAACACATGAGTCTATGGGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTCTCCCTATGGGTCCAGCATTCAAACACATGAGTCTATGGGGTC  700

seq1  CAAACCTATTAAAACCAACACTGCCTGACATATAATCAGTA-TTCCATAT  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAAACCTATTAAAACCAACACTGCCTGACATATAATCAGTATTTCCATAT  750

seq1  GAAGGCAGGATGTTAACAAGAGACAAAGTCTCTGTG-TTTGCAGATGGAG  798
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAAGGCAGGATGTTAACAAGAGACAAAGTCTCTGTGTTTTGCAGATGGAG  800

seq1  AGCATCATTTGGCTAAAGTGGGGAAGGAAAGTGATAAATGAAGAAATGTC  848
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGCTTCATTTGGCTAAAGTGGGGAAGGAAAGTGATAATTGAAGAAATGTC  850

seq1  AGGATAGTTGTGTCCTGTACTGAACCC-TAGGAAGGACAGA  888
        |||| ||||||||||| |||||||| |||||||||||||
seq2  -TGATATTTGTGTCCTGTTCTGAACCCTTAGGAAGGACAGA  890

seq1: chr12_89359818_89360803
seq2: B6Ng01-053D21.g_69_1053 (reverse)

seq1  GTTCAATTTCCTGAACAGAAAACCAGCATCTCATTCATCTCAGCCTAAAT  50
      |||||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  GTTCAATTTCCTGAACAG-AAACAAGCATCTCATTCATCTCAGCCTAAAT  49

seq1  CTGATCCTGCCCCCTCCCGTTCTCCCTCTTCTCTTCCTCCTGAGGCCCTC  100
      ||||||||| ||||| ||| | ||||||||||||||||| ||||||||||
seq2  CTGATCCTG-CCCCTACCGGTATCCCTCTTCTCTTCCTCATGAGGCCCTC  98

seq1  CAACCCTCTACCTCCCATGATTATTTTATTTCTCCTTCTAAATAGGATTG  150
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAACCCTCTACCTCCCATGATTATTTTATTTCTCC-TCTAAATAGGATTG  147

seq1  AATCGTCCACAATCGTCCACTCTTTAGTCTTCCTTCTTCTTGCAATTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTCCACAATCGTCCACTCTTTAGTCTTCCTTCTTCTTGCAATTCAT  197

seq1  CTGATATTTTTAGGGACTCTAAG-AGGCCTTATGTTTTCATTTCGATTCT  249
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGATATTTTTAGGGACTCTAAGAAGGCCTTATGTTTTCATTTCGATTCT  247

seq1  GTTGCCACTGGGAAGTCATTTATAAACTGATG-AAGAGACATTATCTTCA  298
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTTGCCACTGGGAAGTCATTTATAAACTGATGAAAGAGACATTATCTTCA  297

seq1  GGTTTTAGCAGTATAGAATGTTGAATCTTTTTAATTACCAGCAAAAAAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTAGCAGTATAGAATGTTGAATCTTTTTAATTACCAGCAAAAAAAC  347

seq1  CCTAGTCTCTTTCTCTTTTACATTTAGGGTTACAGTGGGCATAGGGAGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTCTCTTTCTCTTTTACATTTAGGGTTACAGTGGGCATAGGGAGGG  397

seq1  GGAGTTCAAGTGGGTGTCATTCTTGGTAGCCAATAGATTTAAAGGTCAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCAAGTGGGTGTCATTCTTGGTAGCCAATAGATTTAAAGGTCAAC  447

seq1  ATGCTTAGCCAATAAGAACTGTATTTTTGCTTATGTAACCTGTGCTCGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTAGCCAATAAGAACTGTATTTTTGCTTATGTAACCTGTGCTCGTG  497

seq1  AAATGTTTATAAAAGATTTATTCATTATATGTAAGTACACTGTAGGTGTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTATAAAAGATTTATTCATTATATGTAAGTACACTGTAGGTGTC  547

seq1  TTCAGATGCATCAGAGGAGGGTGTCAGATCTCTTTACAGATGGTTTGAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATGCATCAGAGGAGGGTGTCAGATCTCTTTACAGATGGTTTGAGT  597

seq1  TACCATTTGGTTGCTGGAATTTGAAATTCGGACCTTCAGAAGAGCAGTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTTGGTTGCTGGAATTTGAAATTCGGACCTTCAGAAGAGCAGTCA  647

seq1  GTGCTCATAACCACTGAGCCATCTCTCGAGCCCAAACCTTTTGTTTTGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCATAACCACTGAGCCATCTCTCGAGCCCAAACCTTTTGTTTTGCA  697

seq1  TCGATCTGTGTTTCACTCGGGGTGTCTTTAGGTACCACTGACCGAGGTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATCTGTGTTTCACTCGGGGTGTCTTTAGGTACCACTGACCGAGGTTT  747

seq1  GGGGTCTTTCAATATGGTAAACTCAGAGACCCTGTCTCCTGTAAAAATCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTTTCAATATGGTAAACTCAGAGACCCTGTCTCCTGTAAAAATCT  797

seq1  ACAGATGTGAGTAATTTACTATGTTAAGGGAGTTGTTGATGACTCAGCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGTGAGTAATTTACTATGTTAAGGGAGTTGTTGATGACTCAGCTA  847

seq1  ACAAACTTTCTCTCCCAGGCCCTTAATATACATACAGTCAGTGTCTTTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTTTCTCTCCCAGGCCCTTAATATACATACAGTCAGTGTCTTTGA  897

seq1  TCCAGCACCATCACTTTCTTTCAGTCCTACATGCCAGTTTTTTTGGTCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCACCATCACTTTCTTTCAGTCCTACATGCCAGTTTTTTTGGTCTA  947

seq1  TGTCTTTTTTATTTCTTTTTAATGAATGATTTGAATTC  986
      ||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTTTATTTCTTTTTAATGAATGATTTGAATTC  985