BAC Information

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BAC

Clone NameB6Ng01-053H05
Chromosome13 (Build37)12 (Build37)
Map Location 13,685,106 - 13,686,28432,631,616 - 32,631,843
singlet/doubletsingletsinglet
Overlap geneLyst
Upstream geneEro1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1
Downstream geneLOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053H05.bB6Ng01-053H05.g
ACCDH876493DH876494
length1,173867
definitionDH876493|Mus musculus domesticus DNA, BAC clone: B6Ng01-053H05, 5' end.DH876494|Mus musculus domesticus DNA, BAC clone: B6Ng01-053H05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,685,106 - 13,686,284)(32,631,616 - 32,631,843)
sequence
gaattccagagtattttttatagtctgctgctatattcaacttgaacacc
tttctctgattttttaaaattatttttagatgcctgttaaaaagaattta
agtcccagaaatattatcaaatgtggcttttcttggccatttgtgaaatt
acaatgtaagtgacctgaatttttgaaatgatgttctataagcaacaaag
agattattttaattcttttgttttattacagatgacttgaaataaactat
cacattcttaatggagatttttaaaatatcacaatataaagtattaggcc
aatatactttgatctgtaaggcttgctggagcatctctgtagtcccaact
acttgggaggctgaagcaggaggatcacatgttcaagaccagcctggaca
tttaacagattagtgggactctgtctcaaaaatgagaaaatggggttgag
aatatggcatggtggtagagtactgtctggcatatacagggccctgggtt
tgaaaacaataacaaaatacttgtatcagaaaatatgtaatcctgaggtc
tattctttataataaagaaccagaaaagaactaatactttataataaatt
ttcagcatatctgtccccaattagattggtaactgtaaactgatcgtgga
gtcagtgaggcaactctgttctcattggcactactttttcactgttgctt
ctcatcagtgcttgtccttgtgcctcttaatttccctggccttgctttat
aataattgagagagatatgatacatttcggaattttttgaatgcttacta
agtctaagcactggaaagaatagaataaggaaaaaagtacctaataacat
gaaatagtaatgcttaaaaccagatgtcttgattagtaaagaaagaaata
aaattattttccaaaaggatagccattgtttcattcaaacgttagtcttt
gaaattgaaacccacagtggtgaggaaatgggagcttccagccattttaa
agaaatggacaaatgagatgagcactagggtttcatgcacttagtcatgc
ttataaaactgtttttaccgatcttggaaagtaaagagtcattcaaagtg
gactacttaatgtattgaagaatggacttaagatcatacaagtattatgt
atggtgttgaagctagccacccc
gaattcagctgggcatggtggcacacgcctttaatcccagcacttgggag
gcaaaggcagggagatttctgagtttgaagccagcctggtctacagagtg
agttccaggacagccagggctacacagagaaaccctctctaaaaaaacac
aaacaaacacaaaaacaataacaaaaaaccaatgaattcatgaaattctt
aggcaaatggatgcatctggaggatgttatcctgagtgaggtaacccaat
cacaaaagaagtcacttgatatgtactcactgacaagcggttattagccc
agaaacttagaatatccaagatacaatttgcaaaatacatgaaactcaag
aagaagaaagaccaaagtgtggatactttgctcctccttagaacagagaa
caaaatacccctggaaggagtcacagagacaaagtttggagctaagatga
aggaaagaccatccagagactgccccacccagggatccatcccatataca
accaccaaacccagacaatattgcatatgccagaaagactttgctgacag
gaccctgatatagctctctcttgtgaggctatgcctgtctctggcaaaat
acagaggtggatgctcactgtcatctattggatggaacacagggccccaa
tggaggagctagagaaagtacccaaggagctgaagggatctgcaacccta
taggtggaacaacaatatgaactaaccagtacccccagagcttatgtctc
tagctgcatacgtagcagaagatggcctagttggccatcaatgggaagag
aggccccttggtcttacaaactttatatgccccagtatgggggtatgcca
gggccaagaagtgggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_13685106_13686284
seq2: B6Ng01-053H05.b_45_1217

seq1  GAATTCCAGAGTATTTTTTATAGTCTGCTGCTATATTCAACTTGAACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGTATTTTTTATAGTCTGCTGCTATATTCAACTTGAACACC  50

seq1  TTTCTCTGATTTTTTAAAATTATTTTTAGATGCCTGTTAAAAAGAATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGATTTTTTAAAATTATTTTTAGATGCCTGTTAAAAAGAATTTA  100

seq1  AGTCCCAGAAATATTATCAAATGTGGCTTTTCTTGGCCATTTGTGAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAGAAATATTATCAAATGTGGCTTTTCTTGGCCATTTGTGAAATT  150

seq1  ACAATGTAAGTGACCTGAATTTTTGAAATGATGTTCTATAAGCAACAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTAAGTGACCTGAATTTTTGAAATGATGTTCTATAAGCAACAAAG  200

seq1  AGATTATTTTAATTCTTTTGTTTTATTACAGATGACTTGAAATAAACTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTTTAATTCTTTTGTTTTATTACAGATGACTTGAAATAAACTAT  250

seq1  CACATTCTTAATGGAGATTTTTAAAATATCACAATATAAAGTATTAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTTAATGGAGATTTTTAAAATATCACAATATAAAGTATTAGGCC  300

seq1  AATATACTTTGATCTGTAAGGCTTGCTGGAGCATCTCTGTAGTCCCAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACTTTGATCTGTAAGGCTTGCTGGAGCATCTCTGTAGTCCCAACT  350

seq1  ACTTGGGAGGCTGAAGCAGGAGGATCACATGTTCAAGACCAGCCTGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAGGCTGAAGCAGGAGGATCACATGTTCAAGACCAGCCTGGACA  400

seq1  TTTAACAGATTAGTGGGACTCTGTCTCAAAAATGAGAAAATGGGGTTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAGATTAGTGGGACTCTGTCTCAAAAATGAGAAAATGGGGTTGAG  450

seq1  AATATGGCATGGTGGTAGAGTACTGTCTGGCATATACAGGGCCCTGGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGCATGGTGGTAGAGTACTGTCTGGCATATACAGGGCCCTGGGTT  500

seq1  TGAAAACAATAACAAAATACTTGTATCAGAAAATATGTAATCCTGAGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACAATAACAAAATACTTGTATCAGAAAATATGTAATCCTGAGGTC  550

seq1  TATTCTTTATAATAAAGAACCAGAAAAGAACTAATACTTTATAATAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTATAATAAAGAACCAGAAAAGAACTAATACTTTATAATAAATT  600

seq1  TTCAGCATATCTGTCCCCAATTAGATTGGTAACTGTAAACTGATCGTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCATATCTGTCCCCAATTAGATTGGTAACTGTAAACTGATCGTGGA  650

seq1  GTCAGTGAGGCAACTCTGTTCTCATTGGCACTACTTTTTCACTGTTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGAGGCAACTCTGTTCTCATTGGCACTACTTTTTCACTGTTGCTT  700

seq1  CTCATCAGTGCTTGTCCTTGTGCCTCTTAATTTCCCTGGCCTTGC-TTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTCATCAGTGCTTGTCCTTGTGCCTCTTAATTTCCCTGGCCTTGCTTTAT  750

seq1  AATAATTGAGAGAGATATGATACA-TTCGGAA-TTTTTGAATGCTTACTA  797
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  AATAATTGAGAGAGATATGATACATTTCGGAATTTTTTGAATGCTTACTA  800

seq1  AGTCTAAGCACTGGAAAGAATAGAATAAGGAAAAAAGTACCTAATAACAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAGCACTGGAAAGAATAGAATAAGGAAAAAAGTACCTAATAACAT  850

seq1  GAAATAGTAATGCTTAAAACCAGATGTCTTGATTAGTTAAGAAAGAAATA  897
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAAATAGTAATGCTTAAAACCAGATGTCTTGATTAGTAAAGAAAGAAATA  900

seq1  AAATTATTTTCCAAAAGGATAGCCATTGTTTCATTCAAACGTTAGTCTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTTCCAAAAGGATAGCCATTGTTTCATTCAAACGTTAGTCTTT  950

seq1  GAAATTGAAACCCACAGTGGTGAGGAAATGGGAGCTTCCAGCCATTTTAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGAAACCCACAGTGGTGAGGAAATGGGAGCTTCCAGCCATTTTAA  1000

seq1  AGAAATGGACAAATGAGATGAGCACTAGGGTTTCATGCACTTAGTCATGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGACAAATGAGATGAGCACTAGGGTTTCATGCACTTAGTCATGC  1050

seq1  TTATAAAACTGTTTTTACCGATCTTTGAAAAGTAAAGAGTCATTTCAATA  1097
      ||||||||||||||||||||||| ||| |||||||||||||| ||||| |
seq2  TTATAAAACTGTTTTTACCGATC-TTGGAAAGTAAAGAGTCA-TTCAA-A  1097

seq1  GTGGACTACTAATTGGTAATTGAGGAATGGACTATAAGATCATACAATGT  1147
      |||||||||| | ||   ||||| ||||||||| ||||||||||||| ||
seq2  GTGGACTACTTAATG--TATTGAAGAATGGACT-TAAGATCATACAA-GT  1143

seq1  AATTATGTTATGTGTAGAAAGCTAGCCACCCC  1179
       |||||||   |||| | ||||||||||||||
seq2  -ATTATGTATGGTGTTG-AAGCTAGCCACCCC  1173

seq1: chr12_32631616_32631843
seq2: B6Ng01-053H05.g_662_935 (reverse)

seq1  CTCCCACTTCTTGGCCCTGGC-----------------------------  21
      |||||||||||||||||||||                             
seq2  CTCCCACTTCTTGGCCCTGGCATACCCCCATACTGGGGCATATAAAGTTT  50

seq1  --AAGACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
        |||||| | ||||||||||| ||| |||                ||||
seq2  GTAAGACCAAGGGGCCTCTCTTCCCATTGATGGCCAACTAGGCCATCTTC  100

seq1  TGATACATACGCAGCTAGAGACACGAGCTCCGGGGGTACTGGTCAGTTCA  103
      || ||| || |||||||||||||  ||||| |||||||||||| ||||||
seq2  TGCTACGTATGCAGCTAGAGACATAAGCTCTGGGGGTACTGGTTAGTTCA  150

seq1  TAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTAC  153
      || |||||||||||||||||||||||||| ||||| ||||||||||||||
seq2  TATTGTTGTTCCACCTATAGGGTTGCAGATCCCTTCAGCTCCTTGGGTAC  200

seq1  TTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCTGAC  203
      |||||||| |||||||||||||| ||||||| ||| ||||||||| ||||
seq2  TTTCTCTAGCTCCTCCATTGGGG-CCCTGTGTTCC-ATCCAATAGATGAC  248

seq1  TGTGAGCATCCACTTCTGT-GTTTGC  228
       |||||||||||| |||||  |||||
seq2  AGTGAGCATCCACCTCTGTATTTTGC  274