BAC Information

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BAC

Clone NameB6Ng01-053M23
Chromosome12 (Build37)
Map Location 81,922,734 - 82,045,717
singlet/doubletdoublet
Overlap gene4933426M11Rik
Upstream geneLOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1, Actn1, Wdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568
Downstream geneSfrs5, Slc10a1, Smoc1, Slc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9, Pcnx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053M23.bB6Ng01-053M23.g
ACCDH876745DH876746
length949894
definitionDH876745|Mus musculus domesticus DNA, BAC clone: B6Ng01-053M23, 5' end.DH876746|Mus musculus domesticus DNA, BAC clone: B6Ng01-053M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,922,734 - 81,923,679)(82,044,822 - 82,045,717)
sequence
gaattccttagccctgaaagggccttgggagccatccaggtccatcccta
agcactgggaagactgggtggcttgcccgaggacagaaccactgcctaat
gctgaagctggacctagctgtctactatcagctccctgctatagccaaga
ctgctgcggtcctagaggactgagaagactgaacgaggatatggtagtgt
gtcactggttggtattcctgcttgcctggatcttgggagaaagtatgatg
ccctgagtatatcaacagcagttcttctggagcagcacaggttgtaagga
gtagcaaagcaattcaagaaaatccctggcacattccagtaacttttagg
tggcttaagaggaaagctgagggtgatttttataattaggagcaggttaa
atttcaacaaaagttatttttacctaggagtggtggagcatagctataat
ctcagcatttgagaggttggttgcaaattcaagggcagcctggattacct
agccctccccttctctctcccttcccttcatctcccttctgcttccctgc
tctggcctgcagtgaaatgggtaaggtaatgttctgtcaaatgttcctta
aatcccaatagaagaaattgtggctgttgaagcactgaaataaatgttag
tggctcagaggaaatagaagttggtgactggaaatatccataggagaaag
aaatagagtgcatctacaaaacctcatattgtttataggggatggtagga
ggtcctaaagggtttgaaggtgaatgagaggggaaaattctgcaattcct
tcaaagatggttagagttagcggatggcctggatagtcacttttttgata
ttctcctctggagactttggacttcttgtaattacatatgaaatgtaatc
atgttgcttacattctgttcatactttaggaaattgatctttgttcttt
gaattctttcagtgttgtggtttttgttctgatcagcctaaggaactgaa
ttgttttctactaaaggagagatttcacgtggtgaaataatgaaattggt
actgtgggtaaaaaaaaaaaaaacaaaaaacgctcctatatattgaatcc
ctagggccaatcttggctcagctagctgggaaagatttcaagttgtttct
aaatccaactggccattgtccattcctttctgtccaggtctcaatctcaa
tagttaggtggacggtggtagcttcagcctttaatcatctctgtgagttc
caggcctaccttatctacaaagtccaagacagccaggaaaaccctgagtc
aaagaaccaaaaaaaaaaaaaaaaaaaaaaaagagtcgaaatcaacagtt
attgagaaatagagtttatgcttccagcatggatgtaatacacagcagtc
cacatcggtaactctatccagccttccccagtgaggttgggaggtctaga
aacattgacaataaagactgttgttgttgtgaaaaaggctacttctcttt
aatatttttatctgtaacctaaggcatcatctagattttgagatgtacct
agaatagagtcacacaatttcagctagggtcacagggatgaactgatagc
tcaagaaggagcagagcaaccctgggtctgacctcattcacgtggaataa
gcttgtctattcagttaactatgcaaataaaaacagcatcagtggaccca
ttaaaaaacatgtagcgggcagtggtggcgcactcctttaatcccagcac
tcgggaggcagaggcatgcggatttctgagttccagacagccaggctaca
cagagaaaccctgtctcaaaaaaaaaccaaaaaaacacttgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_81922734_81923679
seq2: B6Ng01-053M23.b_43_991

seq1  GAATTCCTTAGCCCTGAAAGGGCCTTGGGAGCCATCCAGGTCCATCCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGCCCTGAAAGGGCCTTGGGAGCCATCCAGGTCCATCCCTA  50

seq1  AGCACTGGGAAGACTGGGTGGCTTGCCCGAGGACAGAACCACTGCCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGGAAGACTGGGTGGCTTGCCCGAGGACAGAACCACTGCCTAAT  100

seq1  GCTGAAGCTGGACCTAGCTGTCTACTATCAGCTCCCTGCTATAGCCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGCTGGACCTAGCTGTCTACTATCAGCTCCCTGCTATAGCCAAGA  150

seq1  CTGCTGCGGTCCTAGAGGACTGAGAAGACTGAACGAGGATATGGTAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCGGTCCTAGAGGACTGAGAAGACTGAACGAGGATATGGTAGTGT  200

seq1  GTCACTGGTTGGTATTCCTGCTTGCCTGGATCTTGGGAGAAAGTATGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGGTTGGTATTCCTGCTTGCCTGGATCTTGGGAGAAAGTATGATG  250

seq1  CCCTGAGTATATCAACAGCAGTTCTTCTGGAGCAGCACAGGTTGTAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGTATATCAACAGCAGTTCTTCTGGAGCAGCACAGGTTGTAAGGA  300

seq1  GTAGCAAAGCAATTCAAGAAAATCCCTGGCACATTCCAGTAACTTTTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAAGCAATTCAAGAAAATCCCTGGCACATTCCAGTAACTTTTAGG  350

seq1  TGGCTTAAGAGGAAAGCTGAGGGTGATTTTTATAATTAGGAGCAGGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAAGAGGAAAGCTGAGGGTGATTTTTATAATTAGGAGCAGGTTAA  400

seq1  ATTTCAACAAAAGTTATTTTTACCTAGGAGTGGTGGAGCATAGCTATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAACAAAAGTTATTTTTACCTAGGAGTGGTGGAGCATAGCTATAAT  450

seq1  CTCAGCATTTGAGAGGTTGGTTGCAAATTCAAGGGCAGCCTGGATTACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATTTGAGAGGTTGGTTGCAAATTCAAGGGCAGCCTGGATTACCT  500

seq1  AGCCCTCCCCTTCTCTCTCCCTTCCCTTCATCTCCCTTCTGCTTCCCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCCCCTTCTCTCTCCCTTCCCTTCATCTCCCTTCTGCTTCCCTGC  550

seq1  TCTGGCCTGCAGTGAAATGGGTAAGGTAATGTTCTGTCAAATGTTCCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCTGCAGTGAAATGGGTAAGGTAATGTTCTGTCAAATGTTCCTTA  600

seq1  AATCCCAATAGAAGAAATTGTGGCTGTTGAAGCACTGAAATAAATGTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAATAGAAGAAATTGTGGCTGTTGAAGCACTGAAATAAATGTTAG  650

seq1  TGGCTCAGAGGAAATAGAAGTTGGTGACTGGAAATATCCATAGGAGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGAGGAAATAGAAGTTGGTGACTGGAAATATCCATAGGAGAAAG  700

seq1  AAATAGAGTGCATCTACAAAACCTCATATTGTTTATAGGGGATGGTAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAGTGCATCTACAAAACCTCATATTGTTTATAGGGGATGGTAGGA  750

seq1  GGTCCT-AAGGGTTTGAAGGTGAATGAGAGGGGAAAATTCTGCAATTCCT  799
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTAAAGGGTTTGAAGGTGAATGAGAGGGGAAAATTCTGCAATTCCT  800

seq1  TCAAAGATGGTAAGAGTTAGCGAAGGGCCTGGATAGTCAC-TTTTTGATA  848
      ||||||||||| |||||||||| | ||||||||||||||| |||||||||
seq2  TCAAAGATGGTTAGAGTTAGCGGATGGCCTGGATAGTCACTTTTTTGATA  850

seq1  TTCTCCTCTGGAGACTTTGGACTTCTTGTAATTACATTATGAAATGTAAT  898
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTCTCCTCTGGAGACTTTGGACTTCTTGTAATTACA-TATGAAATGTAAT  899

seq1  CA-GGTGCTTACATTCTGTTCATACTTTAGGAAA-TGGTCTTTGTCCTTT  946
      || | ||||||||||||||||||||||||||||| || ||||||| ||||
seq2  CATGTTGCTTACATTCTGTTCATACTTTAGGAAATTGATCTTTGTTCTTT  949

seq1: chr12_82044822_82045717
seq2: B6Ng01-053M23.g_70_963 (reverse)

seq1  ATACAAGTGTTTTTTTGTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGC  50
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  ATACAAGTGTTTTTTTGGTTTTTTTTTGAGACAGGGTTTCTCTGTGTAG-  49

seq1  CCTGGCTGTTCTGGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGC  100
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  CCTGGCTG-TCTGGAACTCAGAAATCCGCATGCCTCTGCCTCCCGAGTGC  98

seq1  TGGGATTAAAGGAGTGCGCCACCACTGCCCGCTACATGTTTTTTAATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTAAAGGAGTGCGCCACCACTGCCCGCTACATGTTTTTTAATGGG  148

seq1  TCCACTGATGCTGTTTTTATTTGCATAGTTAACTGAATAGACAAGCTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGATGCTGTTTTTATTTGCATAGTTAACTGAATAGACAAGCTTAT  198

seq1  TCCACGTGAATGAGGTCAGACCCAGGGTTGCTCTGCTCCTTCTTGAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACGTGAATGAGGTCAGACCCAGGGTTGCTCTGCTCCTTCTTGAGCTA  248

seq1  TCAGTTCATCCCTGTGACCCTAGCTGAAATTGTGTGACTCTATTCTAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCATCCCTGTGACCCTAGCTGAAATTGTGTGACTCTATTCTAGGT  298

seq1  ACATCTCAAAATCTAGATGATGCCTTAGGTTACAGATAAAAATATTAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCAAAATCTAGATGATGCCTTAGGTTACAGATAAAAATATTAAAG  348

seq1  AGAAGTAGCCTTTTTCACAACAACAACAGTCTTTATTGTCAATGTTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAGCCTTTTTCACAACAACAACAGTCTTTATTGTCAATGTTTCTA  398

seq1  GACCTCCCAACCTCACTGGGGAAGGCTGGATAGAGTTACCGATGTGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCCAACCTCACTGGGGAAGGCTGGATAGAGTTACCGATGTGGACT  448

seq1  GCTGTGTATTACATCCATGCTGGAAGCATAAACTCTATTTCTCAATAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTATTACATCCATGCTGGAAGCATAAACTCTATTTCTCAATAACT  498

seq1  GTTGATTTCGACTCTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTTCGACTCTTTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTGACT  548

seq1  CAGGGTTTTCCTGGCTGTCTTGGACTTTGTAGATAAGGTAGGCCTGGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTTCCTGGCTGTCTTGGACTTTGTAGATAAGGTAGGCCTGGAAC  598

seq1  TCACAGAGATGATTAAAGGCTGAAGCTACCACCGTCCACCTAACTATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGATGATTAAAGGCTGAAGCTACCACCGTCCACCTAACTATTGA  648

seq1  GATTGAGACCTGGACAGAAAGGAATGGACAATGGCCAGTTGGATTTAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGACCTGGACAGAAAGGAATGGACAATGGCCAGTTGGATTTAGAA  698

seq1  ACAACTTGAAATCTTTCCCAGCTAGCTGAGCCAAGATTGGCCCTAGGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTGAAATCTTTCCCAGCTAGCTGAGCCAAGATTGGCCCTAGGGAT  748

seq1  TCAATATATAGGAGCGTTTTTTGTTTTTTTTTTTTTTACCCACAGTACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATATAGGAGCGTTTTTTGTTTTTTTTTTTTTTACCCACAGTACCA  798

seq1  ATTTCATTATTTCACCACGTGAAATCTCTCCTTTAGTAGAAAACAATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTATTTCACCACGTGAAATCTCTCCTTTAGTAGAAAACAATTCA  848

seq1  GTTCCTTAGGCTGATCAGAACAAAAACCACAACACTGAAAGAATTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTAGGCTGATCAGAACAAAAACCACAACACTGAAAGAATTC  894