BAC Information

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BAC

Clone NameB6Ng01-055D17
Chromosome12 (Build37)
Map Location 73,110,471 - 73,257,531
singlet/doubletdoublet
Overlap geneLOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik
Upstream gene3110056K07Rik, Arid4a, Timm9, LOC100041035, 2700049A03Rik, LOC666162, Dact1, LOC100041190, Daam1, LOC666213
Downstream geneRtn1, Lrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055D17.bB6Ng01-055D17.g
ACCDH877746DH877747
length3741,039
definitionDH877746|Mus musculus domesticus DNA, BAC clone: B6Ng01-055D17, 5' end.DH877747|Mus musculus domesticus DNA, BAC clone: B6Ng01-055D17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,110,471 - 73,110,844)(73,256,491 - 73,257,531)
sequence
ctaaagctgaaccaaacatacacagaataaaatttaatgagaatagttaa
atatatatcgcaaaacatatccattggaggtaaaatcctccaaagagttg
ttggaccgaaagttagccaaagctacagttgtgccagtttctagaatccg
aaaggaccacctagtgtaatcgcatagggactttaggcaagctcaagcat
ggaccacaccgtagtcactgaagcagcagggaaagagagtgaaaccccga
gcccagtttcaagcaggcatttatagaggcaaacaaatgagcaaggcggt
ttccagcttggcacacatctgattggcgcacgcgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtg
gaattcttcagtctagacacctctgtggccaggtcaggctgatagaatgt
tggcagaaaaagaattgaatgtgattctttgagcagcatatctcttcaag
acaggggtggctgagggcaagagacaatgaattctaggccacatgcatgc
agttatgctagcatgtacaatttatgaaacccagactggaaaatatgaaa
ctggacaatgaacatcaggcctaatcctgataattgacttaatcatgtga
tgctctaaagaaactgaacagtttttgccctgttgggtgactttctagag
agctactgaattaacatctctccctagagtggtgctacaccaatcagcta
aacaatgtctctttcaattttatcttggtgaacaaaaatgggtttattag
accgggtggtggtggtgcacgcctttaaccccagcactagggaggcaaag
gcaggcagatttctgagttcgaggcctgcctggtctacagagtgagttcc
aggacagccagggctatacaaagaaaccctatctcgaaaaaaaaaatggg
tttattagaggagacatgcacacatccatatagaacagacacacatagat
ttttctcactactgcatttagacatctactccatcaaattttgggttttc
tgttttgtttcagaattattttttgtcaagttgagtttcacaacaacaac
aaagttataaaagtgatgttttttttttttttaactaaagggtgacccac
acacacacacaccataatagttgaatgagtgatttataaaatggttagag
gacttgaattactgctgtgaaccccttgttgataattggatgtcatattg
ttgttgaattttcaatagatgatttctgaccaaagtatagagataaacat
actacacgaagcaataactatttggaagaaaaaggtagaagatatgagga
aactgtgtgaaagtttggaggaaaactgtaagtgtccccactctatgtta
cgggagtacttctagatcatagtcatgtttttttttaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_73110471_73110844
seq2: B6Ng01-055D17.b_51_424

seq1  CTAAAGCTGAACCAAACATACACAGAATAAAATTTAATGAGAATAGTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCTGAACCAAACATACACAGAATAAAATTTAATGAGAATAGTTAA  50

seq1  ATATATATCGCAAAACATATCCATTGGAGGTAAAATCCTCCAAAGAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATCGCAAAACATATCCATTGGAGGTAAAATCCTCCAAAGAGTTG  100

seq1  TTGGACCGAAAGTTAGCCAAAGCTACAGTTGTGCCAGTTTCTAGAATCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACCGAAAGTTAGCCAAAGCTACAGTTGTGCCAGTTTCTAGAATCCG  150

seq1  AAAGGACCACCTAGTGTAATCGCATAGGGACTTTAGGCAAGCTCAAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACCACCTAGTGTAATCGCATAGGGACTTTAGGCAAGCTCAAGCAT  200

seq1  GGACCACACCGTAGTCACTGAAGCAGCAGGGAAAGAGAGTGAAACCCCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACACCGTAGTCACTGAAGCAGCAGGGAAAGAGAGTGAAACCCCGA  250

seq1  GCCCAGTTTCAAGCAGGCATTTATAGAGGCAAACAAATGAGCAAGGCGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTTTCAAGCAGGCATTTATAGAGGCAAACAAATGAGCAAGGCGGT  300

seq1  TTCCAGCTTGGCACACATCTGATTGGCGCACGCGTGTGTGTGTGTGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCTTGGCACACATCTGATTGGCGCACGCGTGTGTGTGTGTGTGTG  350

seq1  TGTGTGTGTGTGTGTGTGTGTGTG  374
      ||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTG  374

seq1: chr12_73256491_73257531
seq2: B6Ng01-055D17.g_69_1107 (reverse)

seq1  ATTAAAAAAAAACATGACTAATGATCTAGAAGTACTCCCGTAAACATAGA  50
      ||||||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  ATTAAAAAAAAACATGACT-ATGATCTAGAAGTACTCCCGT-AACATAGA  48

seq1  GT-GAGACACTTACAGTTTTTCCTCCAAACTTTCACACAGTCTCCTCATA  99
      || | ||||||||||| |||||||||||||||||||||||| ||||||||
seq2  GTGGGGACACTTACAG-TTTTCCTCCAAACTTTCACACAGTTTCCTCATA  97

seq1  TCTTCTACCTTTTTCTTCCAAATAGTTATTGCTTCGTGTAGTATGTTTAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTACCTTTTTCTTCCAAATAGTTATTGCTTCGTGTAGTATGTTTAT  147

seq1  CTCTATACTTTGGTCAGAAATCATCTATTGAAAATTCAACAACAATATGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATACTTTGGTCAGAAATCATCTATTGAAAATTCAACAACAATATGA  197

seq1  CATCCAATTATCAACAAGGGGTTCACAGCAGTAATTCAAGTCCTCTAACC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAATTATCAACAAGGGGTTCACAGCAGTAATTCAAGTCCTCTAACC  247

seq1  ATTTTATAAATCACTCATTCAACTATTATGGTGTGTGTGTGTGTGGGTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAAATCACTCATTCAACTATTATGGTGTGTGTGTGTGTGGGTCA  297

seq1  CCCTTTAGTTAAAAAAAAAAAAAACATCACTTTTATAACTTTGTTGTTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAGTTAAAAAAAAAAAAAACATCACTTTTATAACTTTGTTGTTGT  347

seq1  TGTGAAACTCAACTTGACAAAAAATAATTCTGAAACAAAACAGAAAACCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAACTCAACTTGACAAAAAATAATTCTGAAACAAAACAGAAAACCC  397

seq1  AAAATTTGATGGAGTAGATGTCTAAATGCAGTAGTGAGAAAAATCTATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGATGGAGTAGATGTCTAAATGCAGTAGTGAGAAAAATCTATGT  447

seq1  GTGTCTGTTCTATATGGATGTGTGCATGTCTCCTCTAATAAACCCATTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTTCTATATGGATGTGTGCATGTCTCCTCTAATAAACCCATTTT  497

seq1  TTTTTTCGAGATAGGGTTTCTTTGTATAGCCCTGGCTGTCCTGGAACTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCGAGATAGGGTTTCTTTGTATAGCCCTGGCTGTCCTGGAACTCA  547

seq1  CTCTGTAGACCAGGCAGGCCTCGAACTCAGAAATCTGCCTGCCTTTGCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGACCAGGCAGGCCTCGAACTCAGAAATCTGCCTGCCTTTGCCT  597

seq1  CCCTAGTGCTGGGGTTAAAGGCGTGCACCACCACCACCCGGTCTAATAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGTGCTGGGGTTAAAGGCGTGCACCACCACCACCCGGTCTAATAAA  647

seq1  CCCATTTTTGTTCACCAAGATAAAATTGAAAGAGACATTGTTTAGCTGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTTGTTCACCAAGATAAAATTGAAAGAGACATTGTTTAGCTGAT  697

seq1  TGGTGTAGCACCACTCTAGGGAGAGATGTTAATTCAGTAGCTCTCTAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTAGCACCACTCTAGGGAGAGATGTTAATTCAGTAGCTCTCTAGAA  747

seq1  AGTCACCCAACAGGGCAAAAACTGTTCAGTTTCTTTAGAGCATCACATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCCAACAGGGCAAAAACTGTTCAGTTTCTTTAGAGCATCACATGA  797

seq1  TTAAGTCAATTATCAGGATTAGGCCTGATGTTCATTGTCCAGTTTCATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCAATTATCAGGATTAGGCCTGATGTTCATTGTCCAGTTTCATAT  847

seq1  TTTCCAGTCTGGGTTTCATAAATTGTACATGCTAGCATAACTGCATGCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGTCTGGGTTTCATAAATTGTACATGCTAGCATAACTGCATGCAT  897

seq1  GTGGCCTAGAATTCATTGTCTCTTGCCCTCAGCCACCCCTGTCTTGAAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTAGAATTCATTGTCTCTTGCCCTCAGCCACCCCTGTCTTGAAGA  947

seq1  GATATGCTGCTCAAAGAATCACATTCAATTCTTTTTCTGCCAACATTCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCTGCTCAAAGAATCACATTCAATTCTTTTTCTGCCAACATTCTA  997

seq1  TCAGCCTGACCTGGCCACAGAGGTGTCTAGACTGAAGAATTC  1041
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTGACCTGGCCACAGAGGTGTCTAGACTGAAGAATTC  1039