BAC Information

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BAC

Clone NameB6Ng01-056D06
Chromosome12 (Build37)
Map Location 35,219,791 - 35,374,247
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668806, Ferd3l, Twist1, Hdac9
Downstream gene4921508M14Rik, Prps1l1, Snx13, Ahr, LOC100043575
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056D06.bB6Ng01-056D06.g
ACCDH878437DH878438
length1,1001,059
definitionDH878437|Mus musculus domesticus DNA, BAC clone: B6Ng01-056D06, 5' end.DH878438|Mus musculus domesticus DNA, BAC clone: B6Ng01-056D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,373,138 - 35,374,247)(35,219,791 - 35,220,851)
sequence
gaattcaatagattcactgtcttatcttcatggaaaagatgttcagggta
ttcagatacattcacctgtccaatgaccatctaaaatactcacaggggca
gccagccaatctccttgtttccgagtatgagactcatctgggtggatcag
acacgtgcctatgcttttgttctgaccccatctgtgagctgtatggctga
ccttattaaatcagctagtgagggcttcatggacttggaaatatttcata
aactgccagttaatgggggagctttgctgtgaattgtttgagcttttgta
tttcaggacagcaattatgcaagggggtggggagtcttgtgcatcggctt
ccttgtctaactctgaacaaggcactgctgtagcactggtggcttttcaa
aagtgtccctacttgtcaatcacatcgactcatccccagtagaggacttg
tgaatctggtaacttcagatttaagctaaaaaaaaaaaaaaaatgccaat
gatccatggaagtcaccgttattctttctgctgagtcattttttattaat
tattgttccctggtacatgagggggaagagaggtctatttgggtgggttc
tgagtgtgcagctaggtttgatatttgttcttcctgacacccctcagtgc
tacaaattatcgcaaagctgttgtgggtaactggatggccacttggtttc
ataatgactaattctgtaatcttaaggagtcctacaatatctgtggggaa
acttttttaattgcctgtttctcagcattttatttcattcacgacttgga
ggagaggaaaagtgaggtcattaaggagaaagctgatatggacaaatatg
tgtcccagttgatccataaaagaaaaaaatcacacttcttttttgtagga
caaacggtttcatattgttcaaatatttctttatctacatctcaggccta
caagtctggtgtgaattacgggatgtcataagaagcttagagcttaaata
gtgggagggaaagggaacttgtacttgctggtttcagggaccttccttgt
cattctctccccctttatggtccaccctcttatggcagcttgagaacctt

gaattccataaattcctgggtgaagtctggtatcctccctctacacagcc
acccatggtcatttccctccattgcatcttcatatgtctcacactgctac
caacaacaacagcattaaatgcactccattgtgatcaatgggtttgatat
gcattctattgtgatcaatgtgtttgatatgcactccattgtgatcaatg
gattagatatgcactccattgtgatcaatgggtttgtgctctcagctttc
taaggagcagtgtggagggaggaatggtctatgtagtcatttttgtttgt
ggactaacttatttacctgaatttcctcttctagaagaaaaacatcagtt
gttagtcaataaatggcagtcattttcatagctgctcgcaactcggagaa
gctgcttgccaccaggctctatatacctggacccggcagcaggtagagag
gttaggaaaacgcatcttcaatcaaattataaaaagagacggttccatac
aaaacaatttttaaaaggatcactgggtcttgatttgatacccttcccct
attttctttcaaaatagagtgcaaaagttatggcttcctctagttttagg
agttagagcagattgaacagtgacttcctctggtattaggagttttacag
agtgtcaggatcaacttgctagaaaagcaacttattggatatagaaaaaa
actccatcttttcagcagcttttctaccgattctgaagctcaataaagca
tgagacccaggggacttgatcttcttcccaaagcagtaattacattgcta
aaaatataaatggataaaatatctttttatacaattatcaaattagtgag
tattattacaaaataatttttaaatgaaaataaataaaatagctcagaca
ctggaagcagtgtcactaatatcaacatggaaaggctaggaaaaaaatgt
tcagaaattggctttttgttgctgggatgtgagccagcacccccttgtcc
agtgagagcacctggggtgcttgtcttctggagaagcgacttgttctgga
gttaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_35373138_35374247
seq2: B6Ng01-056D06.b_46_1145 (reverse)

seq1  AAGGTTTCTTCAAGCTGCATTAAAGAAGGGTGGACCATAAGGGGGAAGGG  50
      ||||||   |||||||||  |||   |||||||||||||| |||| || |
seq2  AAGGTT--CTCAAGCTGCCATAA--GAGGGTGGACCATAAAGGGGGAGAG  46

seq1  AAATGACAAGGAAAGGTCCCTGAAACCAGCAAGTACCAGTTCCCTTTCC-  99
       |||||||||| |||||||||||||||||||||||| |||||||||||| 
seq2  -AATGACAAGG-AAGGTCCCTGAAACCAGCAAGTACAAGTTCCCTTTCCC  94

seq1  -TCCACTAATTAAAGCTCTAAGCCTTCTATAGACATCCCGTAATTCACAC  148
        ||||| ||| |||||||||| |||||   |||||||||||||||||||
seq2  TCCCACT-ATTTAAGCTCTAAG-CTTCTTATGACATCCCGTAATTCACAC  142

seq1  CAGAACTTGTAGGCCTTGAGATGTAGATAAAGAAAATATTTGAACAATAT  198
      ||| ||||||||||| |||||||||||||||| |||||||||||||||||
seq2  CAG-ACTTGTAGGCC-TGAGATGTAGATAAAG-AAATATTTGAACAATAT  189

seq1  GAAACCGTTTGTCCTAC-AAAAAGAAGTGTGATTTTTTTCTTTTATGGAT  247
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAAACCGTTTGTCCTACAAAAAAGAAGTGTGATTTTTTTCTTTTATGGAT  239

seq1  CAACCTGAGACACATATTTGTCCATATCAGCTTTCTCCTTAATGACCTCA  297
      ||| ||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAA-CTGGGACACATATTTGTCCATATCAGCTTTCTCCTTAATGACCTCA  288

seq1  CCTTTCCTCTCCTCCAAGTCGTGAATGAAATAAAAATGCTGAGAAACAGG  347
      | ||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTTTTCCTCTCCTCCAAGTCGTGAATGAAAT-AAAATGCTGAGAAACAGG  337

seq1  CAATTAAAAAAGTTTCCCCACAGATATTGTAGGACTCCTTAAGATTACAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAAAAAGTTTCCCCACAGATATTGTAGGACTCCTTAAGATTACAG  387

seq1  AATTAGTCATTATGAAACCAAGTGGCCATCCAGTTACCCACAACAGCTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTCATTATGAAACCAAGTGGCCATCCAGTTACCCACAACAGCTTT  437

seq1  GCGATAATTTGTAGCACTGAGGGGTGTCAGGAAGAACAAATATCAAACCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATAATTTGTAGCACTGAGGGGTGTCAGGAAGAACAAATATCAAACCT  487

seq1  AGCTGCACACTCAGAACCCACCCAAATAGACCTCTCTTCCCCCTCATGTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCACACTCAGAACCCACCCAAATAGACCTCTCTTCCCCCTCATGTA  537

seq1  CCAGGGAACAATAATTAATAAAAAATGACTCAGCAGAAAGAATAACGGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAACAATAATTAATAAAAAATGACTCAGCAGAAAGAATAACGGTG  587

seq1  ACTTCCATGGATCATTGGCATTTTTTTTTTTTTTTTAGCTTAAATCTGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCATGGATCATTGGCATTTTTTTTTTTTTTTTAGCTTAAATCTGAA  637

seq1  GTTACCAGATTCACAAGTCCTCTACTGGGGATGAGTCGATGTGATTGACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCAGATTCACAAGTCCTCTACTGGGGATGAGTCGATGTGATTGACA  687

seq1  AGTAGGGACACTTTTGAAAAGCCACCAGTGCTACAGCAGTGCCTTGTTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGACACTTTTGAAAAGCCACCAGTGCTACAGCAGTGCCTTGTTCA  737

seq1  GAGTTAGACAAGGAAGCCGATGCACAAGACTCCCCACCCCCTTGCATAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGACAAGGAAGCCGATGCACAAGACTCCCCACCCCCTTGCATAAT  787

seq1  TGCTGTCCTGAAATACAAAAGCTCAAACAATTCACAGCAAAGCTCCCCCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCCTGAAATACAAAAGCTCAAACAATTCACAGCAAAGCTCCCCCA  837

seq1  TTAACTGGCAGTTTATGAAATATTTCCAAGTCCATGAAGCCCTCACTAGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGGCAGTTTATGAAATATTTCCAAGTCCATGAAGCCCTCACTAGC  887

seq1  TGATTTAATAAGGTCAGCCATACAGCTCACAGATGGGGTCAGAACAAAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAATAAGGTCAGCCATACAGCTCACAGATGGGGTCAGAACAAAAG  937

seq1  CATAGGCACGTGTCTGATCCACCCAGATGAGTCTCATACTCGGAAACAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCACGTGTCTGATCCACCCAGATGAGTCTCATACTCGGAAACAAG  987

seq1  GAGATTGGCTGGCTGCCCCTGTGAGTATTTTAGATGGTCATTGGACAGGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGGCTGGCTGCCCCTGTGAGTATTTTAGATGGTCATTGGACAGGT  1037

seq1  GAATGTATCTGAATACCCTGAACATCTTTTCCATGAAGATAAGACAGTGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTATCTGAATACCCTGAACATCTTTTCCATGAAGATAAGACAGTGA  1087

seq1  ATCTATTGAATTC  1110
      |||||||||||||
seq2  ATCTATTGAATTC  1100

seq1: chr12_35219791_35220851
seq2: B6Ng01-056D06.g_68_1126

seq1  GAATTCCATAAATTCCTGGGTGAAGTCTGGTATCCTCCCTCTACACAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAATTCCTGGGTGAAGTCTGGTATCCTCCCTCTACACAGCC  50

seq1  ACCCATGGTCATTTCCCTCCATTGCATCTTCATATGTCTCACACTGCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGGTCATTTCCCTCCATTGCATCTTCATATGTCTCACACTGCTAC  100

seq1  CAACAACAACAGCATTAAATGCACTCCATTGTGATCAATGGGTTTGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAACAGCATTAAATGCACTCCATTGTGATCAATGGGTTTGATAT  150

seq1  GCATTCTATTGTGATCAATGTGTTTGATATGCACTCCATTGTGATCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTATTGTGATCAATGTGTTTGATATGCACTCCATTGTGATCAATG  200

seq1  GATTAGATATGCACTCCATTGTGATCAATGGGTTTGTGCTCTCAGCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGATATGCACTCCATTGTGATCAATGGGTTTGTGCTCTCAGCTTTC  250

seq1  TAAGGAGCAGTGTGGAGGGAGGAATGGTCTATGTAGTCATTTTTGTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGCAGTGTGGAGGGAGGAATGGTCTATGTAGTCATTTTTGTTTGT  300

seq1  GGACTAACTTATTTACCTGAATTTCCTCTTCTAGAAGAAAAACATCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAACTTATTTACCTGAATTTCCTCTTCTAGAAGAAAAACATCAGTT  350

seq1  GTTAGTCAATAAATGGCAGTCATTTTCATAGCTGCTCGCAACTCGGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTCAATAAATGGCAGTCATTTTCATAGCTGCTCGCAACTCGGAGAA  400

seq1  GCTGCTTGCCACCAGGCTCTATATACCTGGACCCGGCAGCAGGTAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTGCCACCAGGCTCTATATACCTGGACCCGGCAGCAGGTAGAGAG  450

seq1  GTTAGGAAAACGCATCTTCAATCAAATTATAAAAAGAGACGGTTCCATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGAAAACGCATCTTCAATCAAATTATAAAAAGAGACGGTTCCATAC  500

seq1  AAAACAATTTTTAAAAGGATCACTGGGTCTTGATTTGATACCCTTCCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATTTTTAAAAGGATCACTGGGTCTTGATTTGATACCCTTCCCCT  550

seq1  ATTTTCTTTCAAAATAGAGTGCAAAAGTTATGGCTTCCTCTAGTTTTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTCAAAATAGAGTGCAAAAGTTATGGCTTCCTCTAGTTTTAGG  600

seq1  AGTTAGAGCAGATTGAACAGTGACTTCCTCTGGTATTAGGAG-TTTACAG  649
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTTAGAGCAGATTGAACAGTGACTTCCTCTGGTATTAGGAGTTTTACAG  650

seq1  AGTGTCAGGATCAACTTGCTAGAAAAGCAACTTATTGGATATAGAAAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAGGATCAACTTGCTAGAAAAGCAACTTATTGGATATAGAAAAAA  700

seq1  ACTCCATCTTTTCAGCAGCTTTTCTACCGATTCTGAAGCTCAATAAAGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATCTTTTCAGCAGCTTTTCTACCGATTCTGAAGCTCAATAAAGCA  750

seq1  TGAGACCCAGGGGACTTGATCTTCTTCCCAAAGCAGTAATTACATTGCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCCAGGGGACTTGATCTTCTTCCCAAAGCAGTAATTACATTGCTA  800

seq1  AAAATATAAATGGATAAAATATCTTTTTATTACAA-TATCAAATTAGTGA  848
      ||||||||||||||||||||||||||||| ||||| ||||||||||||||
seq2  AAAATATAAATGGATAAAATATCTTTTTA-TACAATTATCAAATTAGTGA  849

seq1  GTATTATTACAAAATAATTTTTAAATGAAAATAATTAAAATAGCTCAGAC  898
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTATTATTACAAAATAATTTTTAAATGAAAATAAATAAAATAGCTCAGAC  899

seq1  ACTAGGAAGCAGTGTCACTAATATTCAACATGGAAAGGCTAGGAAAAAAA  948
      ||| ||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  ACT-GGAAGCAGTGTCACTAATA-TCAACATGGAAAGGCTAGG-AAAAAA  946

seq1  ATGTTCAGAAA-TGGCTTTTTGTTGCTGGGATGTGAGGCCAGCACTCACT  997
      ||||||||||| |||||||||||||||||||||||| |||||||| | ||
seq2  ATGTTCAGAAATTGGCTTTTTGTTGCTGGGATGTGA-GCCAGCACCCCCT  995

seq1  GTTCAAGTGAAGAGCACCT-GGGTGCTGGTCTTCCTGAGGAGCGACTTGT  1046
        || |||| ||||||||| ||||||| ||||||  ||| ||||||||||
seq2  TGTCCAGTG-AGAGCACCTGGGGTGCTTGTCTTCTGGAGAAGCGACTTGT  1044

seq1  TCT-GAGTTATATTTT  1061
      ||| |||||| |||||
seq2  TCTGGAGTTA-ATTTT  1059