BAC Information

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BAC

Clone NameB6Ng01-057B24
Chromosome12 (Build37)
Map Location 90,716,402 - 90,871,150
singlet/doubletdoublet
Overlap geneNrxn3
Upstream geneLOC100039261, EG666915
Downstream geneLOC100039498, LOC100039287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057B24.bB6Ng01-057B24.g
ACCDH879088DH879089
length1,150544
definitionDH879088|Mus musculus domesticus DNA, BAC clone: B6Ng01-057B24, 5' end.DH879089|Mus musculus domesticus DNA, BAC clone: B6Ng01-057B24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,869,968 - 90,871,150)(90,716,402 - 90,716,948)
sequence
gaattcacacacatacattcacacacacctgcatacacattcatgcatgc
aatcgcatacacaagattttggaaaataaaagagtttccgtcattgttta
agacataagaataaagccagtaccttaaaatatgcatatatgtgatgatg
tctatataggaaaggtctcgggcaggagaaatggctcaactaccagaagc
tcctattgcttttgcagaggacccaaattcagttccccaaaccacagttg
gtagctcccaacctcccaaccacagtaactccagctccaggacattggga
gttctagtctgggctttgtagatacctgcccttccatctacacacaatac
acacatagacatgtaatttaaaaagacaaaactctaaaatatcagttgaa
cactgctgtcaaatatgtttattaaacacatagattttaatgtatatata
aatggtctccacttcctaaaatgtaagggatgtgtaaacatacatacata
catgtatgtgtctgttttatatggatatatagatctatttataaataact
tggaacatatttatgcctatgtataaagattatacttgtacatatacatg
tacatacactatacatatatacatgtagatacatatgcaacataaaagcc
ttagtcctttatgagggagctggtagtgtctttggactcttgcccacagg
aagacaatactggtccacctgagataatacatttgtatcagaccctaaca
ctagaaagatcttatcttctagccagactaacaagagggcacagagacag
tatccaaattaacaaaatcaggaatgaaaatggagatataacaacagaaa
ccaaggaaattaaaaagaataatcagatcctactacaaagtctacactca
agaaaactagaaaacctggatgaatggatgattttctagacagtaccagg
taccaaagttaatcaggatcatataaaccatctaaatggtcccctacccc
aaaggaatagatgcagtatttaaagtctcccaccaaaagagcccagggtc
agatgtttagagtttgcaattagagactcaagaagatctatctaataatc
tctcaccatcaaaatgaaacgaggaacctactcaatcttctatgaagcca

agtataactccttcagggctgaatcatgttttagaagtcaaaagtgagaa
tgtcagcggatgatgctttgtagtattcaggtttagccccaggaactgtt
gtccggtgatccagtttctatgtgtgagctagaaattctgaactatgggg
ccaatagtcagaattgaaatatgctgctggagtagaagcctgaccgtagg
gcatcaaatactctaatctcagcaggtggaagaacccttgcatggataat
gggagcatcttggtaagacaggagagaagaggacaagggtgctgatgcag
agaagagaagtaaacttgtgaggtgtggctaagaagtttggtcatagcaa
attgagtgttctatatggcagagataggcaaacccaaagcatgggctgtt
catgttatttgttaaacacttggagatagagagggggctttgtttgtttg
ttgttgttgtttgtttttgattttctgtctgcttttgcttttttatattt
ctttccagatttgtgattttgttgttgtttgttggttgttgttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_90869968_90871150
seq2: B6Ng01-057B24.b_46_1195 (reverse)

seq1  TGGCTTCATAGAAAGAATTGAGTAGTGTTCTTTCTGTTTCTATTTTTTGG  50
      |||||||||||||   ||||||||| |||| |   |||||  |||  |||
seq2  TGGCTTCATAGAA--GATTGAGTAG-GTTCCT--CGTTTCATTTTGATGG  45

seq1  AATAGTTTGA-AGAGTATTAGTATAAGATCTTCTTTGAAGGTCTTCTAGA  99
             ||| ||| |||||| || |||||||| ||||  ||| ||||  
seq2  -------TGAGAGATTATTAG-AT-AGATCTTC-TTGA--GTC-TCTA--  80

seq1  ATTTTGCAAAATTCTAAAACCATCTGACCCTGGGCTCTTTTTGGTTGGGA  149
         |||| ||| ||||||  |||||||||||||||||||||  | |||||
seq2  --ATTGC-AAACTCTAAA--CATCTGACCCTGGGCTCTTTT--GGTGGGA  123

seq1  GACTTTAAATAACTGCATCTATTTCCTTTGGGGTTAGGGGACCATTTAGA  199
      |||||||||| |||||||||| ||||||||||| ||||||||||||||||
seq2  GACTTTAAAT-ACTGCATCTA-TTCCTTTGGGG-TAGGGGACCATTTAGA  170

seq1  TGGTTTATATGATCCTGATTTAACTTTGGTACCTGGTAACTGTCTAGAAA  249
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  TGGTTTATATGATCCTGA-TTAACTTTGGTACCTGGT-ACTGTCTAGAAA  218

seq1  ATCATCCATTTCATCCAGGTTTTCTAGTTTTCTTGAGTGTAGACTTTTGT  299
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  ATCATCCA-TTCATCCAGGTTTTCTAGTTTTCTTGAGTGTAGAC-TTTGT  266

seq1  AGTAGGATCTGATTATTCTTTTTAATTTCCTTGGTTTCTGTTGTTATATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGATCTGATTATTCTTTTTAATTTCCTTGGTTTCTGTTGTTATATC  316

seq1  TCCATTTTCATTCCTGATTTTGTTAATTTGGATACTGTCTCTGTGCCCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTCATTCCTGATTTTGTTAATTTGGATACTGTCTCTGTGCCCTC  366

seq1  TTGTTAGTCTGGCTAGAAGATAAGATCTTTCTAGTGTTAGGGTCTGATAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGTCTGGCTAGAAGATAAGATCTTTCTAGTGTTAGGGTCTGATAC  416

seq1  AAATGTATTATCTCAGGTGGACCAGTATTGTCTTCCTGTGGGCAAGAGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATTATCTCAGGTGGACCAGTATTGTCTTCCTGTGGGCAAGAGTC  466

seq1  CAAAGACACTACCAGCTCCCTCATAAAGGACTAAGGCTTTTATGTTGCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACACTACCAGCTCCCTCATAAAGGACTAAGGCTTTTATGTTGCAT  516

seq1  ATGTATCTACATGTATATATGTATAGTGTATGTACATGTATATGTACAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTACATGTATATATGTATAGTGTATGTACATGTATATGTACAAG  566

seq1  TATAATCTTTATACATAGGCATAAATATGTTCCAAGTTATTTATAAATAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCTTTATACATAGGCATAAATATGTTCCAAGTTATTTATAAATAG  616

seq1  ATCTATATATCCATATAAAACAGACACATACATGTATGTATGTATGTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATATATCCATATAAAACAGACACATACATGTATGTATGTATGTTTA  666

seq1  CACATCCCTTACATTTTAGGAAGTGGAGACCATTTATATATACATTAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCCTTACATTTTAGGAAGTGGAGACCATTTATATATACATTAAAA  716

seq1  TCTATGTGTTTAATAAACATATTTGACAGCAGTGTTCAACTGATATTTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTGTTTAATAAACATATTTGACAGCAGTGTTCAACTGATATTTTA  766

seq1  GAGTTTTGTCTTTTTAAATTACATGTCTATGTGTGTATTGTGTGTAGATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTGTCTTTTTAAATTACATGTCTATGTGTGTATTGTGTGTAGATG  816

seq1  GAAGGGCAGGTATCTACAAAGCCCAGACTAGAACTCCCAATGTCCTGGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCAGGTATCTACAAAGCCCAGACTAGAACTCCCAATGTCCTGGAG  866

seq1  CTGGAGTTACTGTGGTTGGGAGGTTGGGAGCTACCAACTGTGGTTTGGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTTACTGTGGTTGGGAGGTTGGGAGCTACCAACTGTGGTTTGGGG  916

seq1  AACTGAATTTGGGTCCTCTGCAAAAGCAATAGGAGCTTCTGGTAGTTGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAATTTGGGTCCTCTGCAAAAGCAATAGGAGCTTCTGGTAGTTGAG  966

seq1  CCATTTCTCCTGCCCGAGACCTTTCCTATATAGACATCATCACATATATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTCCTGCCCGAGACCTTTCCTATATAGACATCATCACATATATG  1016

seq1  CATATTTTAAGGTACTGGCTTTATTCTTATGTCTTAAACAATGACGGAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTAAGGTACTGGCTTTATTCTTATGTCTTAAACAATGACGGAAA  1066

seq1  CTCTTTTATTTTCCAAAATCTTGTGTATGCGATTGCATGCATGAATGTGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTATTTTCCAAAATCTTGTGTATGCGATTGCATGCATGAATGTGT  1116

seq1  ATGCAGGTGTGTGTGAATGTATGTGTGTGAATTC  1183
      ||||||||||||||||||||||||||||||||||
seq2  ATGCAGGTGTGTGTGAATGTATGTGTGTGAATTC  1150

seq1: chr12_90716402_90716948
seq2: B6Ng01-057B24.g_68_617

seq1  GAATTCAGTATAACTCCTTCAGGGCTGAATCATGTTTTAGAAGTCAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATAACTCCTTCAGGGCTGAATCATGTTTTAGAAGTCAAAAG  50

seq1  TGAGAATGTCAGCGGATGATGCTTTGTAGTATTCAGGTTTAGCCCCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATGTCAGCGGATGATGCTTTGTAGTATTCAGGTTTAGCCCCAGGA  100

seq1  ACTGTTGTCCGGTGATCCAGTTTCTATGTGTGAGCTAGAAATTCTGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGTCCGGTGATCCAGTTTCTATGTGTGAGCTAGAAATTCTGAACT  150

seq1  ATGGGGCCAATAGTCAGAATTGAAATATGCTGCTGGAGTAGAAGCCTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCCAATAGTCAGAATTGAAATATGCTGCTGGAGTAGAAGCCTGAC  200

seq1  CGTAGGGCATCAAATACTCTAATCTCAGCAGGTGGAAGAACCCTTGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGGGCATCAAATACTCTAATCTCAGCAGGTGGAAGAACCCTTGCATG  250

seq1  GATAATGGGAGCATCTTGGTAAGACAGGAGAGAAGAGGACAAGGGTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGGGAGCATCTTGGTAAGACAGGAGAGAAGAGGACAAGGGTGCTG  300

seq1  ATGCAGAGAAGAGAAGTAAACTTGTGAGGTGTGGCTAAGAAGTTTGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAGAAGAGAAGTAAACTTGTGAGGTGTGGCTAAGAAGTTTGGTCA  350

seq1  TAGCAAATTGAGTGTTCTATATGGCAGAGATAGGCAAACCCAAAGCATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAATTGAGTGTTCTATATGGCAGAGATAGGCAAACCCAAAGCATGG  400

seq1  GCTGTTCATGTTATTTGTTAAACACTTGGAGATAGAGAGGGGGCTTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCATGTTATTTGTTAAACACTTGGAGATAGAGAGGGGGCTTTGTT  450

seq1  TGTTTGTTGTTGTTGTTTGTTTTTGTTTTTCTGTCTTCTTTTGC-TTTTT  499
      ||||||||||||||||||||||||| |||||||||| ||||||| |||||
seq2  TGTTTGTTGTTGTTGTTTGTTTTTGATTTTCTGTCTGCTTTTGCTTTTTT  500

seq1  ATATTTC-TTCCAGATTTGTGATTTTTGTTGTTG-TTGTT-GTTGTTGTT  546
      ||||||| |||||||||||||| ||||||||||| ||||| |||||||||
seq2  ATATTTCTTTCCAGATTTGTGA-TTTTGTTGTTGTTTGTTGGTTGTTGTT  549

seq1  C  547
      |
seq2  C  550