BAC Information

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BAC

Clone NameB6Ng01-058K14
Chromosome12 (Build37)
Map Location 82,262,123 - 82,420,157
singlet/doubletdoublet
Overlap geneSmoc1, Slc8a3, LOC100042143
Upstream geneActn1, Wdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1
Downstream geneLOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9, Pcnx, Sipa1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058K14.bB6Ng01-058K14.g
ACCDH880177DH880178
length723863
definitionDH880177|Mus musculus domesticus DNA, BAC clone: B6Ng01-058K14, 5' end.DH880178|Mus musculus domesticus DNA, BAC clone: B6Ng01-058K14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,419,438 - 82,420,157)(82,262,123 - 82,262,985)
sequence
gaattcagtaactcaggagttttgaaagcagaggcaagaaaccaaaaatc
ctttatccgcatttcccaagggcgaatgagtgtcagacttgtgactggga
tctctgggcatattacaagatcatttttaacctttgaactgtgatgctga
acatcttcaagccctctaccactccatggtaatttcatgacccctttatc
ctctgagtgaggtcaaagacagaggccctaagccactgttatgaggacca
gtttctggactcctgtgaacctcagcatttggctgctttcctgggcagta
taaaggggagttaatacatagtgccctgaagggaagacctttatagtacg
cactggatatggagtgtgagttttagaaatttaaaaagaacctatataac
ctctaaaatcaaataatgatttgcctatgagttctttaaagccaggcgtg
atggcgcacgcctttaatccccacttgggaggcagagcagatggatttct
gagttcgaggccagcctggtctacagagtgagttctaggacagccagggc
tacacagagaaaccctgtctcaaaaaacaaaacaaaaacaaagacaaaaa
aaaccaaaacaacaaaaaaccacaaaaaagagatctttacatatttctaa
agaaaattagctacactttagaccataaaatagttttggaagagggctga
ctgactctttcaggaagcttttt
gaattctttctccgtgaaagtccatggttctctgagggagaaacaaacca
gagatgggggtggtgaagaggtgagcaggggggctggcaagatggctcag
ctggtaagagcactgactgctcttccgaaggtcctgagttcaaatcccag
cagccacatagtggctcacaaccacccataatgagatctgacgccctttt
ctggtgtgtctgaaggcagctacagtgtacttatgtataataaataattt
ttttaaaaaaaagaggtgggcaggagggaggtgatgaagtcctaacctgt
aagcacttacagttggttagagtcacagtacgaaggctctcagcagagcc
agggctgctccctggcctccttccaatgaggagcccttggatggcttcag
ggacagagaaagaccttgagtgaggataggctgacatatcagggttagtt
cttcctaatggatcatataattctcagaaatttcctggccttctcagagc
ctaatatggtatcaaactcagtatataaccattcagcagccctggctcat
acgagcccccagcactttttttatggcatcctcctagaatgttttgtcac
ccacagtcccatgctgggtcctcctctctccagacactgtcctaagtcct
acaatccctgctgtctctcattgtttattgcaacaacataagcaactctc
aggaggactaaagaggctcctttaaagaactactaggtatttatccagag
agacaacttccttggtcagagcatcctcccaggctgcagttttttgttgt
gttcttgatataagatctcacaattgtagcccaggttagcttcagactcc
tgatctttcttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_82419438_82420157
seq2: B6Ng01-058K14.b_47_769 (reverse)

seq1  AAAAAGCTTCCTG-AGGAGTCAGTCAGCCCTCTTCCAAAACTATTTTATG  49
      ||||||||||||| | ||||||||||||||||||||||||||||||||||
seq2  AAAAAGCTTCCTGAAAGAGTCAGTCAGCCCTCTTCCAAAACTATTTTATG  50

seq1  GTCTAAAGTGTAGCTAA-TTTCTTTAGGAATATGTAAAGATCTC-TTTTT  97
      ||||||||||||||||| ||||||||| |||||||||||||||| |||||
seq2  GTCTAAAGTGTAGCTAATTTTCTTTAGAAATATGTAAAGATCTCTTTTTT  100

seq1  GTGGTTTTTTGTTGTTTTGGTTTTTTTTGTCTTTGTTTTTGTTTTGTTTT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTTTTGTTGTTTTGGTTTTTTTTGTCTTTGTTTTTGTTTTGTTTT  150

seq1  TTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTAGAACTCACTCTG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTAGAACTCACTCTG  200

seq1  TAGACCAGGCTGGCCTCGAACTCAGAAATCCATCTGCTCTGCCTCCCAAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGCCTCGAACTCAGAAATCCATCTGCTCTGCCTCCCAAG  250

seq1  TGGGGATTAAAGGCGTGCGCCATCACGCCTGGCTTTAAAGAACTCATAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATTAAAGGCGTGCGCCATCACGCCTGGCTTTAAAGAACTCATAGG  300

seq1  CAAATCATTATTTGATTTTAGAGGTTATATAGGTTCTTTTTAAATTTCTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCATTATTTGATTTTAGAGGTTATATAGGTTCTTTTTAAATTTCTA  350

seq1  AAACTCACACTCCATATCCAGTGCGTACTATAAAGGTCTTCCCTTCAGGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCACACTCCATATCCAGTGCGTACTATAAAGGTCTTCCCTTCAGGG  400

seq1  CACTATGTATTAACTCCCCTTTATACTGCCCAGGAAAGCAGCCAAATGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGTATTAACTCCCCTTTATACTGCCCAGGAAAGCAGCCAAATGCT  450

seq1  GAGGTTCACAGGAGTCCAGAAACTGGTCCTCATAACAGTGGCTTAGGGCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCACAGGAGTCCAGAAACTGGTCCTCATAACAGTGGCTTAGGGCC  500

seq1  TCTGTCTTTGACCTCACTCAGAGGATAAAGGGGTCATGAAATTACCATGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTTGACCTCACTCAGAGGATAAAGGGGTCATGAAATTACCATGG  550

seq1  AGTGGTAGAGGGCTTGAAGATGTTCAGCATCACAGTTCAAAGGTTAAAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTAGAGGGCTTGAAGATGTTCAGCATCACAGTTCAAAGGTTAAAAA  600

seq1  TGATCTTGTAATATGCCCAGAGATCCCAGTCACAAGTCTGACACTCATTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTGTAATATGCCCAGAGATCCCAGTCACAAGTCTGACACTCATTC  650

seq1  GCCCTTGGGAAATGCGGATAAAGGATTTTTGGTTTCTTGCCTCTGCTTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGGGAAATGCGGATAAAGGATTTTTGGTTTCTTGCCTCTGCTTTC  700

seq1  AAAACTCCTGAGTTACTGAATTC  720
      |||||||||||||||||||||||
seq2  AAAACTCCTGAGTTACTGAATTC  723

seq1: chr12_82262123_82262985
seq2: B6Ng01-058K14.g_68_930

seq1  GAATTCTTTCTCCGTGAAAGTCCATGGTTCTCTGAGGGAGAAACAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCCGTGAAAGTCCATGGTTCTCTGAGGGAGAAACAAACCA  50

seq1  GAGATGGGGGTGGTGAAGAGGTGAGCAGGGGGGCTGGCAAGATGGCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGGGGTGGTGAAGAGGTGAGCAGGGGGGCTGGCAAGATGGCTCAG  100

seq1  CTGGTAAGAGCACTGACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAAGAGCACTGACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAG  150

seq1  CAGCCACATAGTGGCTCACAACCACCCATAATGAGATCTGACGCCCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACATAGTGGCTCACAACCACCCATAATGAGATCTGACGCCCTTTT  200

seq1  CTGGTGTGTCTGAAGGCAGCTACAGTGTACTTATGTATAATAAATAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGTCTGAAGGCAGCTACAGTGTACTTATGTATAATAAATAATTT  250

seq1  TTTTAAAAAAAAGAGGTGGGCAGGAGGGAGGTGATGAAGTCCTAACCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAAAAGAGGTGGGCAGGAGGGAGGTGATGAAGTCCTAACCTGT  300

seq1  AAGCACTTACAGTTGGTTAGAGTCACAGTACGAAGGCTCTCAGCAGAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTACAGTTGGTTAGAGTCACAGTACGAAGGCTCTCAGCAGAGCC  350

seq1  AGGGCTGCTCCCTGGCCTCCTTCCAATGAGGAGCCCTTGGATGGCTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGCTCCCTGGCCTCCTTCCAATGAGGAGCCCTTGGATGGCTTCAG  400

seq1  GGACAGAGAAAGACCTTGAGTGAGGATAGGCTGACATATCAGGGTTAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAGAAAGACCTTGAGTGAGGATAGGCTGACATATCAGGGTTAGTT  450

seq1  CTTCCTAATGGATCATATAATTCTCAGAAATTTCCTGGCCTTCTCAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAATGGATCATATAATTCTCAGAAATTTCCTGGCCTTCTCAGAGC  500

seq1  CTAATATGGTATCAAACTCAGTATATAACCATTCAGCAGCCCTGGCTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATGGTATCAAACTCAGTATATAACCATTCAGCAGCCCTGGCTCAT  550

seq1  ACGAGCCCCCAGCACTTTTTTTATGGCATCCTCCTAGAATGTTTTGTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGCCCCCAGCACTTTTTTTATGGCATCCTCCTAGAATGTTTTGTCAC  600

seq1  CCACAGTCCCATGCTGGGTCCTCCTCTCTCCAGACACTGTCCTAAGTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTCCCATGCTGGGTCCTCCTCTCTCCAGACACTGTCCTAAGTCCT  650

seq1  ACAATCCCTGCTGTCTCTCATTGTTTATTGCAACAACATAAGCAACTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCCTGCTGTCTCTCATTGTTTATTGCAACAACATAAGCAACTCTC  700

seq1  AGGAGGACTAAAGAGGCTCCTTTAAAGAACTACTAGGTATTTATCCAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGACTAAAGAGGCTCCTTTAAAGAACTACTAGGTATTTATCCAGAG  750

seq1  AGACAACTTCCTTGGTCAGAGCATCCTCCCAGGCTGCAGTTTTTTGTTTG  800
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGACAACTTCCTTGGTCAGAGCATCCTCCCAGGCTGCAGTTTTTTG-TTG  799

seq1  TGTTCTTGATATAAGATCTCACAA-TGTAGCCCAGGCTAGCTTCAGACTC  849
      |||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  TGTTCTTGATATAAGATCTCACAATTGTAGCCCAGGTTAGCTTCAGACTC  849

seq1  CTGATCTTTCTTCT  863
      ||||||||||||||
seq2  CTGATCTTTCTTCT  863