BAC Information

Click to search

BAC

Clone NameB6Ng01-059A12
Chromosome12 (Build37)2 (Build37)
Map Location 32,631,616 - 32,631,84341,490,307 - 41,491,442
singlet/doubletsingletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059A12.bB6Ng01-059A12.g
ACCDH880446DH880447
length7061,121
definitionDH880446|Mus musculus domesticus DNA, BAC clone: B6Ng01-059A12, 5' end.DH880447|Mus musculus domesticus DNA, BAC clone: B6Ng01-059A12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,631,616 - 32,631,843)(41,490,307 - 41,491,442)
sequence
gaattctttgtctagctctgagcccgattttttaatggggttatttgatt
ttctcgagtccaccttcttgacttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttgccaaactgttggtggctt
ttttgtctcatttacagtgtcttttgccttacagaagctttgtaatttta
tgaggtcccatttgtagattctcgatcttacagcacaagccattgccgtc
ttcttagaattgggaaaaaaacacccatcgaaggagttgaaaggatggac
catctagagactgccatacccggagatccatcccgtaatccgcatccaaa
tgctgacaccattgcatacaccagctagattttgctgaaaggaccctcat
atagctatctcttgtgaggtaatgccggggcctggcaaacacagaagtgg
atgctcacagtcaactattgatggaacacagggcctccaatggaggagtt
agagaaagtacccaaggagctaaaggggtctgcaaccctacaggtggaac
aacaatatgaactaaccagaaccccagagctctggactctagctgcatat
gtatcagaagatggcctagttggccatcattgggaagagaggccccttgg
tcttgcaaagtttatatgccttagtacaggggaacgccagggccaagaag
tgggag
gaattctaatattctcaaaggtagaaattaagtgaaccctctcacagcag
gcagacagttctcaactacaaaagaacaagaacaacaagaacaacaataa
gaacaagaacaagaacaacaacaacaacaacaacaacaaccagtataaaa
gaagctggctgtattggtgcacatgctgatgacatgagggcatgaggaac
aggagtccaagcttgtctaggctacacattatttttaaaaggcataaaat
gtgatatatgttggaggtgcttggcatttatctagataaatggcagatat
taagttaaagctggccattttaaccataattccaaacctatgggatgaat
atattttaagcagttagaaagaagaaaaactaaaattgatataattttac
tcatttaacaagtatattcaaactgcatgtctatattcaattataaaatg
tacatatttaatgtttcatacactgaacagaaccaagcatgattaaacac
attttaaatagtttataatattaaaataaaacatgttacttagaactgac
actttggtcactgcagataaataaaatatgctcagttttctgtggaaatt
ggtaactatctctcatgttattgcaccccacctaacaaagtcacagttaa
aacagtcatgttagagcaacaagacgtttaaagataaagtagattaatgg
ctcctattgcctattaatacagttctcctattagttatatctaggtatat
tcaaacaaaatcagaaaagtcagattagcatagtcctgaataatgctctc
ttcgatatagaagtctcacaaagttaaatggatggttgtgtaggagtaag
taggccattacttttgacatgggtccatttatgataaattattattgtgc
tgagtgaaggaaatgcaagaaaagtcacattcatatttatgtatgtatca
taagtaccaaagtatacatatatatgcatatacacatgtatgtgtatata
tactatacaatacatactaccccacccccatacccacacacccacacgta
tatttttatatttgatacattatgacgggtggacagaaccacagatatgg
atattttcctttctcatagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631843
seq2: B6Ng01-059A12.b_474_745 (reverse)

seq1  CTCCCACTTCTTGGCCCTG-------------------------------  19
      |||||||||||||||||||                               
seq2  CTCCCACTTCTTGGCCCTGGCGTTCCCCTGTACTAAGGCATATAAACTTT  50

seq1  GCAAGACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
      |||||||| | ||||||||||| ||| |||                ||||
seq2  GCAAGACCAAGGGGCCTCTCTTCCCAATGATGGCCAACTAGGCCATCTTC  100

seq1  TGATACATACGCAGCTAGAGACACGAGCTCCGGGGGTACTGGTCAGTTCA  103
      ||||||||| |||||||||| |  ||||| | ||||| ||||| ||||||
seq2  TGATACATATGCAGCTAGAGTCCAGAGCT-CTGGGGTTCTGGTTAGTTCA  149

seq1  TAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTAC  153
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TATTGTTGTTCCACCTGTAGGGTTGCAGACCCCTTTAGCTCCTTGGGTAC  199

seq1  TTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCTGAC  203
      ||||||||||||||||||||| | ||||||| ||| || |||||| ||||
seq2  TTTCTCTAACTCCTCCATTGGAGGCCCTGTGTTCC-AT-CAATAGTTGAC  247

seq1  TGTGAGCATCCACTTCTGTGTTTGC  228
      |||||||||||||||||||||||||
seq2  TGTGAGCATCCACTTCTGTGTTTGC  272

seq1: chr2_41490307_41491442
seq2: B6Ng01-059A12.g_69_1189 (reverse)

seq1  AGCTATTGAGAAAGGAAAATATCATAATCTGTTGTTTCTGATCTCACCAG  50
      ||||| |||||||||||||||||   ||||| || ||||| || |||| |
seq2  AGCTA-TGAGAAAGGAAAATATCCATATCTG-TGGTTCTG-TC-CACCCG  46

seq1  TCATAAATGTATCAAATATATATATATATATGTGTGTGTGTGTGTGTATG  100
      |||| ||||||||||  ||||| | ||||| ||||| ||||||| |||||
seq2  TCAT-AATGTATCAA--ATATAAAAATATACGTGTGGGTGTGTGGGTATG  93

seq1  TGTGTGTGTGTAAGTATGTATGTGTATATGTATATATACACATACATGTG  150
       | ||| | || ||||||||| |||||| |||||||||||||||||||||
seq2  GGGGTG-GGGT-AGTATGTAT-TGTATA-GTATATATACACATACATGTG  139

seq1  TATATGCATATATATGTATACTTTTGGTACTTTTATGATACATACATAAA  200
      ||||||||||||||||||||| ||||||||  ||||||||||||||||||
seq2  TATATGCATATATATGTATAC-TTTGGTAC--TTATGATACATACATAAA  186

seq1  TATGAATGTGGACTTTTC-TGCATTTTCCTTCACTCAGCACAATAATAAT  249
      ||||||||| |||||||| |||| ||||||||||||||||||||||||||
seq2  TATGAATGT-GACTTTTCTTGCA-TTTCCTTCACTCAGCACAATAATAAT  234

seq1  TTATCATAAATGGACCCATGTCAAAAGTAATGGCCTACTTACTCCTACAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATAAATGGACCCATGTCAAAAGTAATGGCCTACTTACTCCTACAC  284

seq1  AACCATCCATTTAACTTTGTGAGACTTCTATATCGAAGAGAGCATTATTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCCATTTAACTTTGTGAGACTTCTATATCGAAGAGAGCATTATTC  334

seq1  AGGACTATGCTAATCTGACTTTTCTGATTTTGTTTGAATATACCTAGATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTATGCTAATCTGACTTTTCTGATTTTGTTTGAATATACCTAGATA  384

seq1  TAACTAATAGGAGAACTGTATTAATAGGCAATAGGAGCCATTAATCTACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAATAGGAGAACTGTATTAATAGGCAATAGGAGCCATTAATCTACT  434

seq1  TTATCTTTAAACGTCTTGTTGCTCTAACATGACTGTTTTAACTGTGACTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTAAACGTCTTGTTGCTCTAACATGACTGTTTTAACTGTGACTT  484

seq1  TGTTAGGTGGGGTGCAATAACATGAGAGATAGTTACCAATTTCCACAGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGTGGGGTGCAATAACATGAGAGATAGTTACCAATTTCCACAGAA  534

seq1  AACTGAGCATATTTTATTTATCTGCAGTGACCAAAGTGTCAGTTCTAAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGCATATTTTATTTATCTGCAGTGACCAAAGTGTCAGTTCTAAGT  584

seq1  AACATGTTTTATTTTAATATTATAAACTATTTAAAATGTGTTTAATCATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTTTTATTTTAATATTATAAACTATTTAAAATGTGTTTAATCATG  634

seq1  CTTGGTTCTGTTCAGTGTATGAAACATTAAATATGTACATTTTATAATTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTCTGTTCAGTGTATGAAACATTAAATATGTACATTTTATAATTG  684

seq1  AATATAGACATGCAGTTTGAATATACTTGTTAAATGAGTAAAATTATATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGACATGCAGTTTGAATATACTTGTTAAATGAGTAAAATTATATC  734

seq1  AATTTTAGTTTTTCTTCTTTCTAACTGCTTAAAATATATTCATCCCATAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAGTTTTTCTTCTTTCTAACTGCTTAAAATATATTCATCCCATAG  784

seq1  GTTTGGAATTATGGTTAAAATGGCCAGCTTTAACTTAATATCTGCCATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAATTATGGTTAAAATGGCCAGCTTTAACTTAATATCTGCCATTT  834

seq1  ATCTAGATAAATGCCAAGCACCTCCAACATATATCACATTTTATGCCTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGATAAATGCCAAGCACCTCCAACATATATCACATTTTATGCCTTT  884

seq1  TAAAAATAATGTGTAGCCTAGACAAGCTTGGACTCCTGTTCCTCATGCCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAATGTGTAGCCTAGACAAGCTTGGACTCCTGTTCCTCATGCCC  934

seq1  TCATGTCATCAGCATGTGCACCAATACAGCCAGCTTCTTTTATACTGGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCATCAGCATGTGCACCAATACAGCCAGCTTCTTTTATACTGGTT  984

seq1  GTTGTTGTTGTTGTTGTTGTTGTTCTTGTTCTTGTTCTTATTGTTGTTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTGTTGTTGTTGTTGTTCTTGTTCTTGTTCTTATTGTTGTTCT  1034

seq1  TGTTGTTCTTGTTCTTTTGTAGTTGAGAACTGTCTGCCTGCTGTGAGAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTCTTGTTCTTTTGTAGTTGAGAACTGTCTGCCTGCTGTGAGAGG  1084

seq1  GTTCACTTAATTTCTACCTTTGAGAATATTAGAATTC  1136
      |||||||||||||||||||||||||||||||||||||
seq2  GTTCACTTAATTTCTACCTTTGAGAATATTAGAATTC  1121