BAC Information

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BAC

Clone NameB6Ng01-061M19
Chromosome12 (Build37)
Map Location 66,616,829 - 66,755,438
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
Downstream geneLOC100040700, EG238217, Mdga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061M19.bB6Ng01-061M19.g
ACCDH882380DH882381
length1,1181,003
definitionDH882380|Mus musculus domesticus DNA, BAC clone: B6Ng01-061M19, 5' end.DH882381|Mus musculus domesticus DNA, BAC clone: B6Ng01-061M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,754,301 - 66,755,438)(66,616,829 - 66,617,840)
sequence
gaattcaattaatcatttttttttctaagttcaatctttttcttactgta
ttccaaaagttagccatgttgccctgatgtttaccacacaagaagacatg
aggaaatacacttccagggtcttcttggccttagggccctaggtcacctc
tgacacactgccttgcattaacactcttgaaggccactataacttacagc
acattctttaaagcaaatagccatactcttcttagaatgttaagaatacc
gaaagtatatttggcacactcagagtaagcctcctctacatttgacagta
tgaagaataaacgttggcagctatatttcagttatgatagaaaatttctg
acagctttcctctctattgctcataaaaagatgacttaaatgaactagtg
tcaagtggattagtaaaattctcttccaactgacagaagattatgtctat
acagctcctttaaactctcaatattacttttaaaagcaggaaatttcttg
gtttaagatttagtatttctttgtgaataattaacagggcctctcatttt
ggtagaaaatggtatagttcagtgagtgtagcacagggctacctgaagaa
taagggttatggattttatgcctatgtagttaacttatcacctttgtcct
ggtttgattttggcttatgggataaacactgaccaaaactaacatgggga
ggaaatggttatttagcttatagactacagtctatcattgggagaaatga
aggcaaaaatccttgagttagaaactgaagcagagatcatggatgagtac
tgataactctgataaagaatcctgataagctccccctggtttgcttagtt
gcttctcttatacaccccaagccctatctgtctagggatggaactgccca
aaagtattagtctgggacatcccacatcactcagaatgagatatgtcccc
aaagacaggacaatgtgaggaagacattcttcagtagaagttcatctttc
ctggtgtgtctaattcatatcagctcacctactccacataccactctact
actacatcacaaactacagcacaatctttaggtcacatgaattggacaaa
tgaaatttagcagtcaat
gaattcagtgatgttctaccatgaaaaccaagtggaaaatgttttcatgt
ggaaacattaaagtattacgctgttttgaaaaaatgagattttatttata
agaaaaaaaggtattaatgcttgatatattcagatattatctcaacaaag
atttcgacattaactcctctttagtatcccacttaaaaaaccaaagcatt
agtttagaaaaatatttttcactttttgtatacttactcgtctctgagga
tgctgtcttagccaatatgtaccatctaactttattttagattaagggga
taatattttatattgtgagggtgatggttttcctgatgagcacttattcc
aataagttcattcaagcttagcttaataatcagcctaattagaagggtct
gcttcacatttctctttgacccttgcatttatattcattcctggtacgtt
cttttcaattaagtatttatgagtatgaaagtttctgctaaaaagagaag
taaatagctttgactcatcctctgcatcaaaagataaatggagcccaaga
cttgctgagctctgtgcagggagcaaggaagatgactctgtggtcagttt
ctaatgagcagtgtgcacaaattacctttcacagcagcattatgagggta
agtaagcatattatcttatgcttgcttctccattgctgtagatggcacca
ttaagatttaagatgggctttacatccatgccacatatctagtaagtggc
atagcaaagagttttaagtcagcttctctagtttaccttctgtggcggtt
tgaataggtttggtactcataaattcacttgtttgaatgcttgaccatgc
agagtggcactatgaggaggaggtgtgactttattggaagaggtgtggtc
ttgttgaagagtgtaccattttggagtgggcttttaagtttatatatatg
cacagcttatcccagtgtaaacacattgcgtctcctctggctgctttgga
tca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_66754301_66755438
seq2: B6Ng01-061M19.b_48_1165 (reverse)

seq1  ATTGACTGCTAATATTTCATTTTGTCCATATCATTGATG-GGCCTAAAGA  49
      |||||||||||| |||||| ||||||||    ||| ||| | ||||||||
seq2  ATTGACTGCTAA-ATTTCA-TTTGTCCA----ATTCATGTGACCTAAAGA  44

seq1  TTGTGCTGGTTAGTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  99
      ||||||||  |||||   ||||  |||  ||    | ||| || |||| |
seq2  TTGTGCTG--TAGTT---TGTG-ATGT-AGTAGTAGAGTG-GTATGTG-G  85

seq1  TGTGTGTGAGCTTGATATGAATTAGACACACCAGGAAAGATGAACTTTCT  149
       ||  |||||| ||||||||||||||||||||||||||||||||| ||||
seq2  AGTAGGTGAGC-TGATATGAATTAGACACACCAGGAAAGATGAAC-TTCT  133

seq1  ACTGAAGAATTGTCTTCCTCACATTGTCCTGTCTTTGGGGACATATTCTT  199
      ||||||||| ||||||||||||||||||||||||||||||||||||   |
seq2  ACTGAAGAA-TGTCTTCCTCACATTGTCCTGTCTTTGGGGACATAT--CT  180

seq1  CATTCCTGAGTGATGTGGGATGTCCCAGACTAATACTTTTGGGCAGTTCC  249
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATT-CTGAGTGATGTGGGATGTCCCAGACTAATACTTTTGGGCAGTTCC  229

seq1  ATCCCTAGACAGATAGGGCTTGGGGTGTATAAGAGAAGCAACTAAGCAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTAGACAGATAGGGCTTGGGGTGTATAAGAGAAGCAACTAAGCAAA  279

seq1  CCAGGGGGAGCTTATCAGGATTCTTTATCAGAGTTATCAGTACTCATCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGGAGCTTATCAGGATTCTTTATCAGAGTTATCAGTACTCATCCA  329

seq1  TGATCTCTGCTTCAGTTTCTAACTCAAGGATTTTTGCCTTCATTTCTCCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCTGCTTCAGTTTCTAACTCAAGGATTTTTGCCTTCATTTCTCCC  379

seq1  AATGATAGACTGTAGTCTATAAGCTAAATAACCATTTCCTCCCCATGTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAGACTGTAGTCTATAAGCTAAATAACCATTTCCTCCCCATGTTA  429

seq1  GTTTTGGTCAGTGTTTATCCCATAAGCCAAAATCAAACCAGGACAAAGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGTCAGTGTTTATCCCATAAGCCAAAATCAAACCAGGACAAAGGT  479

seq1  GATAAGTTAACTACATAGGCATAAAATCCATAACCCTTATTCTTCAGGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTTAACTACATAGGCATAAAATCCATAACCCTTATTCTTCAGGTA  529

seq1  GCCCTGTGCTACACTCACTGAACTATACCATTTTCTACCAAAATGAGAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTGCTACACTCACTGAACTATACCATTTTCTACCAAAATGAGAGG  579

seq1  CCCTGTTAATTATTCACAAAGAAATACTAAATCTTAAACCAAGAAATTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTAATTATTCACAAAGAAATACTAAATCTTAAACCAAGAAATTTC  629

seq1  CTGCTTTTAAAAGTAATATTGAGAGTTTAAAGGAGCTGTATAGACATAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTAAAAGTAATATTGAGAGTTTAAAGGAGCTGTATAGACATAAT  679

seq1  CTTCTGTCAGTTGGAAGAGAATTTTACTAATCCACTTGACACTAGTTCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTCAGTTGGAAGAGAATTTTACTAATCCACTTGACACTAGTTCAT  729

seq1  TTAAGTCATCTTTTTATGAGCAATAGAGAGGAAAGCTGTCAGAAATTTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCATCTTTTTATGAGCAATAGAGAGGAAAGCTGTCAGAAATTTTC  779

seq1  TATCATAACTGAAATATAGCTGCCAACGTTTATTCTTCATACTGTCAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATAACTGAAATATAGCTGCCAACGTTTATTCTTCATACTGTCAAAT  829

seq1  GTAGAGGAGGCTTACTCTGAGTGTGCCAAATATACTTTCGGTATTCTTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGAGGCTTACTCTGAGTGTGCCAAATATACTTTCGGTATTCTTAA  879

seq1  CATTCTAAGAAGAGTATGGCTATTTGCTTTAAAGAATGTGCTGTAAGTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAAGAAGAGTATGGCTATTTGCTTTAAAGAATGTGCTGTAAGTTA  929

seq1  TAGTGGCCTTCAAGAGTGTTAATGCAAGGCAGTGTGTCAGAGGTGACCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGCCTTCAAGAGTGTTAATGCAAGGCAGTGTGTCAGAGGTGACCTA  979

seq1  GGGCCCTAAGGCCAAGAAGACCCTGGAAGTGTATTTCCTCATGTCTTCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTAAGGCCAAGAAGACCCTGGAAGTGTATTTCCTCATGTCTTCTT  1029

seq1  GTGTGGTAAACATCAGGGCAACATGGCTAACTTTTGGAATACAGTAAGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTAAACATCAGGGCAACATGGCTAACTTTTGGAATACAGTAAGAA  1079

seq1  AAAGATTGAACTTAGAAAAAAAAATGATTAATTGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTGAACTTAGAAAAAAAAATGATTAATTGAATTC  1118

seq1: chr12_66616829_66617840
seq2: B6Ng01-061M19.g_67_1069

seq1  GAATTCAGTGATGTTCTACCATGAAAACCAAGTGGAAAATGTTTTCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGATGTTCTACCATGAAAACCAAGTGGAAAATGTTTTCATGT  50

seq1  GGAAACATTAAAGTATTACGCTGTTTTGAAAAAATGAGATTTTATTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATTAAAGTATTACGCTGTTTTGAAAAAATGAGATTTTATTTATA  100

seq1  AGAAAAAAAGGTATTAATGCTTGATATATTCAGATATTATCTCAACAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAGGTATTAATGCTTGATATATTCAGATATTATCTCAACAAAG  150

seq1  ATTTCGACATTAACTCCTCTTTAGTATCCCACTTAAAAAACCAAAGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGACATTAACTCCTCTTTAGTATCCCACTTAAAAAACCAAAGCATT  200

seq1  AGTTTAGAAAAATATTTTTCACTTTTTGTATACTTACTCGTCTCTGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGAAAAATATTTTTCACTTTTTGTATACTTACTCGTCTCTGAGGA  250

seq1  TGCTGTCTTAGCCAATATGTACCATCTAACTTTATTTTAGATTAAGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTTAGCCAATATGTACCATCTAACTTTATTTTAGATTAAGGGGA  300

seq1  TAATATTTTATATTGTGAGGGTGATGGTTTTCCTGATGAGCACTTATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTTATATTGTGAGGGTGATGGTTTTCCTGATGAGCACTTATTCC  350

seq1  AATAAGTTCATTCAAGCTTAGCTTAATAATCAGCCTAATTAGAAGGGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTTCATTCAAGCTTAGCTTAATAATCAGCCTAATTAGAAGGGTCT  400

seq1  GCTTCACATTTCTCTTTGACCCTTGCATTTATATTCATTCCTGGTACGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACATTTCTCTTTGACCCTTGCATTTATATTCATTCCTGGTACGTT  450

seq1  CTTTTCAATTAAGTATTTATGAGTATGAAAGTTTCTGCTAAAAAGAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAATTAAGTATTTATGAGTATGAAAGTTTCTGCTAAAAAGAGAAG  500

seq1  TAAATAGCTTTGACTCATCCTCTGCATCAAAAGATAAATGGAGCCCAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGCTTTGACTCATCCTCTGCATCAAAAGATAAATGGAGCCCAAGA  550

seq1  CTTGCTGAGCTCTGTGCAGGGAGCAAGGAAGATGACTCTGTGGTCAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGAGCTCTGTGCAGGGAGCAAGGAAGATGACTCTGTGGTCAGTTT  600

seq1  CTAATGAGCAGTGTGCACAAATTACCTTTCACAGCAGCATTATGAGGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAGCAGTGTGCACAAATTACCTTTCACAGCAGCATTATGAGGGTA  650

seq1  AGTAAGCATATTATCTTATGCTTGCTTCTCCATTGCTGTAGATGGCACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCATATTATCTTATGCTTGCTTCTCCATTGCTGTAGATGGCACCA  700

seq1  TTAAGATTTAAGATGGGCTTTACATCCATGCCACATATCTAGTAAGTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATTTAAGATGGGCTTTACATCCATGCCACATATCTAGTAAGTGGC  750

seq1  ATAGCAAAGAGTTTTAAGTCAGCTTCTCTAGTTTACCTTCTGTGGCGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAAGAGTTTTAAGTCAGCTTCTCTAGTTTACCTTCTGTGGCGGTT  800

seq1  TGAATAGGTTTGGTACTCATAAATTCACTTGTTTGAATGCTTGACCATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGGTTTGGTACTCATAAATTCACTTGTTTGAATGCTTGACCATGC  850

seq1  AGAGTGGCACTATGAGGAGGAGGTGTGACTTTATTGGAAGAGGTGTGGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGCACTATGAGGAGGAGGTGTGACTTTATTGGAAGAGGTGTGGTC  900

seq1  TTGTTAGAAGAAGTGTACCATTTTGGAAGTGGGCCTTTAAGGTTTTATAT  950
      ||||| |||| ||||||||||||||| ||||||| ||||||  |||||||
seq2  TTGTT-GAAG-AGTGTACCATTTTGG-AGTGGGCTTTTAAG--TTTATAT  945

seq1  ATATGCACAAGCTATACCCAGTGTAAAACACATTGCGTCTCCTCCTGGCT  1000
      |||||||| ||||   |||||||| |||||||||||||||||| ||||||
seq2  ATATGCAC-AGCTTATCCCAGTGT-AAACACATTGCGTCTCCT-CTGGCT  992

seq1  GCCTTTGGATCA  1012
      | ||||||||||
seq2  G-CTTTGGATCA  1003