BAC Information

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BAC

Clone NameB6Ng01-064J22
Chromosome12 (Build37)
Map Location 119,821,178 - 119,960,859
singlet/doubletdoublet
Overlap geneLOC668611
Upstream geneRapgef5, A930023M06Rik, Cdca7l, Dnahc11, Sp4, LOC100042993
Downstream geneEG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064J22.bB6Ng01-064J22.g
ACCDH884351DH884352
length1,118410
definitionDH884351|Mus musculus domesticus DNA, BAC clone: B6Ng01-064J22, 5' end.DH884352|Mus musculus domesticus DNA, BAC clone: B6Ng01-064J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,959,728 - 119,960,859)(119,821,178 - 119,821,593)
sequence
gaattcttctcaatgtttgcttctctggaagcaattttataaactttatt
ggcattttattggtgatatggcaaattccttattgctattccaagcctat
aatttaccttgagcctgctggtgccaaacttccaaagactcacccctgtc
gtgctggagatagtagctgaaggtcacacctttcctgtggtgactttact
ctctgagtcttccactgcaggcaacagatagacacattccttcagagggc
aagtgcacataggctatctaaaaacaaggaggaactcgttccccctggaa
gcttcatattgttgaaaatgggaatgcttcaagacaacagttcagttgca
atgaacttcttcccagaaggcaagcatggctcatattggacctcagtttt
ctggtcagtatcctcattgtctgggaatggctttcagtgggtagtgtgga
tgactactctagagacttatcttaattgaatgctgcttacaggtgttctt
tgaatgaacctgagaaagagacacttgatacaacttttccttggagttaa
taatattaaataataataaatattgataaaagtgttggggactgaaactc
ctgactgcatgacactcactgccaggagaggtcatctgaggaaagagcct
ggaatcacatgtcaacacaatctcttaggtcccatagttaaagagaccct
gagttctcaaacagttctctgccaaaggaacaaaagcagttcatgttggg
tagtgaacatggggaaggagttcatcttccatagtggactcttcaccaac
aatctcataataaaactgtttcttgtgactgtgaacatgctacctcccat
cacttcaaacctgattctgtcatttcttcattggtgtgtgattaagcatg
tggattcaggaaagcaaactggtggtgagggtcaaatgttacactatcct
tatgccaaagatgaaacaatccacacagaaaagaaagagacttctttgag
atataactgtgaaatactctctgtgtcagccattattgatatgaataact
agattttctgatattctgctctcattctcttactgtgaagatcctctcag
ctgcacgagaaatcatca
ttttactccttgcacaaacttctgagaattcacattacacataattatgc
cacctattattttcttagcatttacatttcttatatatttattaataaat
gtaagcatatctgtaagatttttgactgttttaactatgtttagaaagaa
acttcttcctagccaggcataactgtggacacatacagtccttatattca
ggaggcctagacaagaagattgtctgagttcaagaccaggtgtgagtcaa
agatgatggaggggaggacgaggagggggagagagaaatattgaggaaag
aaagttcttgcatactttgtgaagattcctacctgatgcttgtctttctt
ccttttcaagggtgctagaatatggaggcatgttcttgacatttaaatgg
atggcctcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_119959728_119960859
seq2: B6Ng01-064J22.b_50_1167 (reverse)

seq1  TGATGATTTCTCGGTGAGCTGGGAGGATCTCTCACAGTAAGAGAATGAGA  50
      |||||||||||||   ||||| |||||||| |||||||||||||||||||
seq2  TGATGATTTCTCGTGCAGCTGAGAGGATCT-TCACAGTAAGAGAATGAGA  49

seq1  GCAGAATATCAGAAAAATCTAAGTTTAATTTTCATATCAATATTGGCTGA  100
      |||||||||||| ||||||| |||    | |||||||||||| |||||||
seq2  GCAGAATATCAG-AAAATCT-AGT----TATTCATATCAATAATGGCTGA  93

seq1  CACAGAGAGTTATTTCACAGTTATATCTACAAAGAGTCCTCTTTCTATTC  150
      ||||||||| |||||||||||||||||| ||||||   |||||||| |||
seq2  CACAGAGAG-TATTTCACAGTTATATCT-CAAAGAAGTCTCTTTCTTTTC  141

seq1  TGTGTGGATTGTTTCATCTTTGGGCATAAGGATAGTGTAACATTTTGACC  200
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  TGTGTGGATTGTTTCATCTTT-GGCATAAGGATAGTGTAACA-TTTGACC  189

seq1  CTCACCACCAGTTTTGCTTTTCCTGAATCCACATGCTTTAATTCACACAC  250
      ||||||||||| ||||| ||||||||||||||||||||  | ||||||||
seq2  CTCACCACCAG-TTTGC-TTTCCTGAATCCACATGCTT--AATCACACAC  235

seq1  CAATGAAGAAATGACAGAATCAGGTTTGAAGTGATGGGAGGTAGCATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAGAAATGACAGAATCAGGTTTGAAGTGATGGGAGGTAGCATGTT  285

seq1  CACAGTCACAAGAAACAGTTTTATTATGAGATTGTTGGTGAAGAGTCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCACAAGAAACAGTTTTATTATGAGATTGTTGGTGAAGAGTCCAC  335

seq1  TATGGAAGATGAACTCCTT-CCCATGTTCACTACCCAACATGAACTGCTT  399
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATGGAAGATGAACTCCTTCCCCATGTTCACTACCCAACATGAACTGCTT  385

seq1  TTGTTCCTTTGGCAGAGAACTGTTTGAGAACTCAGGGTCTCTTTAACTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCTTTGGCAGAGAACTGTTTGAGAACTCAGGGTCTCTTTAACTAT  435

seq1  GGGACCTAAGAGATTGTGTTGACATGTGATTCCAGGCTCTTTCCTCAGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTAAGAGATTGTGTTGACATGTGATTCCAGGCTCTTTCCTCAGAT  485

seq1  GACCTCTCCTGGCAGTGAGTGTCATGCAGTCAGGAGTTTCAGTCCCCAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTCCTGGCAGTGAGTGTCATGCAGTCAGGAGTTTCAGTCCCCAAC  535

seq1  ACTTTTATCAATATTTATTATTATTTAATATTATTAACTCCAAGGAAAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATCAATATTTATTATTATTTAATATTATTAACTCCAAGGAAAAG  585

seq1  TTGTATCAAGTGTCTCTTTCTCAGGTTCATTCAAAGAACACCTGTAAGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCAAGTGTCTCTTTCTCAGGTTCATTCAAAGAACACCTGTAAGCA  635

seq1  GCATTCAATTAAGATAAGTCTCTAGAGTAGTCATCCACACTACCCACTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCAATTAAGATAAGTCTCTAGAGTAGTCATCCACACTACCCACTGA  685

seq1  AAGCCATTCCCAGACAATGAGGATACTGACCAGAAAACTGAGGTCCAATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATTCCCAGACAATGAGGATACTGACCAGAAAACTGAGGTCCAATA  735

seq1  TGAGCCATGCTTGCCTTCTGGGAAGAAGTTCATTGCAACTGAACTGTTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATGCTTGCCTTCTGGGAAGAAGTTCATTGCAACTGAACTGTTGT  785

seq1  CTTGAAGCATTCCCATTTTCAACAATATGAAGCTTCCAGGGGGAACGAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGCATTCCCATTTTCAACAATATGAAGCTTCCAGGGGGAACGAGT  835

seq1  TCCTCCTTGTTTTTAGATAGCCTATGTGCACTTGCCCTCTGAAGGAATGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTGTTTTTAGATAGCCTATGTGCACTTGCCCTCTGAAGGAATGT  885

seq1  GTCTATCTGTTGCCTGCAGTGGAAGACTCAGAGAGTAAAGTCACCACAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATCTGTTGCCTGCAGTGGAAGACTCAGAGAGTAAAGTCACCACAGG  935

seq1  AAAGGTGTGACCTTCAGCTACTATCTCCAGCACGACAGGGGTGAGTCTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGTGACCTTCAGCTACTATCTCCAGCACGACAGGGGTGAGTCTTT  985

seq1  GGAAGTTTGGCACCAGCAGGCTCAAGGTAAATTATAGGCTTGGAATAGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTTGGCACCAGCAGGCTCAAGGTAAATTATAGGCTTGGAATAGCA  1035

seq1  ATAAGGAATTTGCCATATCACCAATAAAATGCCAATAAAGTTTATAAAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAATTTGCCATATCACCAATAAAATGCCAATAAAGTTTATAAAAT  1085

seq1  TGCTTCCAGAGAAGCAAACATTGAGAAGAATTC  1132
      |||||||||||||||||||||||||||||||||
seq2  TGCTTCCAGAGAAGCAAACATTGAGAAGAATTC  1118

seq1: chr12_119821178_119821593
seq2: B6Ng01-064J22.g_70_485

seq1  GAATTCTTTTACTCCTTGCACAAACTTCTGAGAATTCACATTACACATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTACTCCTTGCACAAACTTCTGAGAATTCACATTACACATAA  50

seq1  TTATGCCACCTATTATTTTCTTAGCATTTACATTTCTTATATATTTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCCACCTATTATTTTCTTAGCATTTACATTTCTTATATATTTATTA  100

seq1  ATAAATGTAAGCATATCTGTAAGATTTTTGACTGTTTTAACTATGTTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTAAGCATATCTGTAAGATTTTTGACTGTTTTAACTATGTTTAG  150

seq1  AAAGAAACTTCTTCCTAGCCAGGCATAACTGTGGACACATACAGTCCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACTTCTTCCTAGCCAGGCATAACTGTGGACACATACAGTCCTTA  200

seq1  TATTCAGGAGGCCTAGACAAGAAGATTGTCTGAGTTCAAGACCAGGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGGAGGCCTAGACAAGAAGATTGTCTGAGTTCAAGACCAGGTGTG  250

seq1  AGTCAAAGATGATGGAGGGGAGGACGAGGAGGGGGAGAGAGAAATATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAGATGATGGAGGGGAGGACGAGGAGGGGGAGAGAGAAATATTGA  300

seq1  GGAAAGAAAGTTCTTGCATACTTTGTGAAGATTCCTACCTGATGCTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAAGTTCTTGCATACTTTGTGAAGATTCCTACCTGATGCTTGTC  350

seq1  TTTCTTCCTTTTCAAGGGTGCTAGAATATGGAGGCATGCCCTTGACATTT  400
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  TTTCTTCCTTTTCAAGGGTGCTAGAATATGGAGGCATGTTCTTGACATTT  400

seq1  AAATGGATGGCCACAG  416
      |||||||||||| |||
seq2  AAATGGATGGCCTCAG  416