BAC Information

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BAC

Clone NameB6Ng01-064N08
Chromosome12 (Build37)
Map Location 102,202,881 - 102,317,288
singlet/doubletdoublet
Overlap gene0610010D24Rik, LOC100040184, Smek1
Upstream geneKcnk13, Psmc1, BC002230, Calm1, Ttc7b, Rps6ka5, LOC100040123, 9030617O03Rik, EG667148, Gpr68
Downstream gene4930463M05Rik, Mylf-ps, 4932415G16Rik, Mtac2d1, Fbln5, Trip11, Atxn3, LOC100040305, LOC100040297, Cpsf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064N08.bB6Ng01-064N08.g
ACCDH884502DH884503
length1,190777
definitionDH884502|Mus musculus domesticus DNA, BAC clone: B6Ng01-064N08, 5' end.DH884503|Mus musculus domesticus DNA, BAC clone: B6Ng01-064N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,202,881 - 102,203,979)(102,316,511 - 102,317,288)
sequence
gaattcaaggtcagtgtgggcagaaaagcaaaacccaatctcaaaacaca
cacacacacacacacacacacacacacacacacacacacacacacacacg
agagacagatagcctggggcataaaaccattcgctatataaggttgacaa
ctcgagttgaatccctagaatccacatcaaaaactagactcagccaggca
gtggtggcgcacgcctttaatcccagcacttgggaggcagaggcaggcag
atttctgagttcaaggccagcctggtctacagagttgagttccaggacag
ccaaggctatcagagaaaccctgccttaaaaacaaacaaacaaacaaaca
aacaaacaaaacaaaacaaaacaaaactagacgcaagggggtggagaggt
agctcagtggttaacactgctttctgcttttgcaggacccaagtttagtt
cccagcacctatgtatcgagcagatcacaaccacctttaacctcagtctc
tgtgggcatctgcacacacatgcacacagtccctgccaacatacacacca
ctgtacatatatgcacatggttcccacctacatacacgtattaaaagtaa
ggttaatcttttaaaaaatttgtgaaagcctgatgtgatggcacacatct
gatgtcacagcatccctatagtgaggtgggaagcagcctggcgaacatag
ccatataaacccagaaaccagaaagacacacacacacacacacacacaca
cacacacacacacacacacacacacacacacagttctcattccatgccag
gcacacctccaagctagagtcatttgggaagacagactctcaagtgagaa
aatgcctctgagtgactgggcaagaaagcgagggcagcgtgcatttctta
gagattgatatgggagggttgggccccattgtagtggtgctatgcctgag
ctgagcaagccaggaaggagcactctcccacagcctctccatcagctcct
gcatctaggttctgcccacgatgaactacaagctgcagtatgaaataaac
cccttcccctcccaaagttctttggtcatggtgcttatcacagccgtaaa
aaccctcaatagctgagtagggaaaaaacaaactctagagaatacctgcc
cttatagcacccttatccccctgggcgcttgacatctgga
gaattctttttttttcccctccattgaggacaatgtaggctttttttttt
ttttgaaaaattatacttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtttgcatgtatgttctggttctgttgaaggtcagaagacccttagacct
ggaattacactgtcatgagctaccatgtgggttctgaaaactgaacccca
gtccactacaagagctgcagggtctcatgtagccaagactggtcttgaat
tcctatcctcctaccttcatctcccaaggacagggtctacagatgtaagt
gtctgccatcatgcctgggaaaatgggaagtatttgtttttcccataaaa
tgggttattgtccagtagaaaattaaatggcataaatttatagtctttct
ggtaaacagaatgtttggggagcttgaagcagaagtatctctagttctag
actagcttaagcttcatgaaagaccctttctcaaaagagaagaaaaggaa
acttaaaaagttattgtgagtgggtttgacctctagtaattgtttcccct
gccccctggaaaaaaagtctttcaaagacattgagtatggtaatattttc
ctccttttctccatgaatctgagttattcagattattatttgaaaattta
gcagtctgggagtacataatgtataatcaaagtactagggctacatatta
aattttgaaacacaaagctgtcctaaactctgacatccacctgcatctac
ctcctggatattgggactaaagatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_102202881_102203979
seq2: B6Ng01-064N08.b_151_1238

seq1  AGACAGATAGCCTGGGGCATAAAACCATTCGCTATATAAGGTTGACAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGATAGCCTGGGGCATAAAACCATTCGCTATATAAGGTTGACAACT  50

seq1  CGAGTTGAATCCCTAGAATCCACATCAAAAACTAGACTCAGCCAGGCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTGAATCCCTAGAATCCACATCAAAAACTAGACTCAGCCAGGCAGT  100

seq1  GGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGAT  150

seq1  TTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTTGAGTTCCAGGACAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTTGAGTTCCAGGACAGCC  200

seq1  AAGGCTATCAGAGAAACCCTGCCTTAAAAACAAACAAACAAACAAACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTATCAGAGAAACCCTGCCTTAAAAACAAACAAACAAACAAACAAA  250

seq1  CAAACAAAACAAAACAAAACAAAACTAGACGCAAGGGGGTGGAGAGGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAACAAAACAAAACAAAACTAGACGCAAGGGGGTGGAGAGGTAG  300

seq1  CTCAGTGGTTAACACTGCTTTCTGCTTTTGCAGGACCCAAGTTTAGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGTTAACACTGCTTTCTGCTTTTGCAGGACCCAAGTTTAGTTCC  350

seq1  CAGCACCTATGTATCGAGCAGATCACAACCACCTTTAACCTCAGTCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTATGTATCGAGCAGATCACAACCACCTTTAACCTCAGTCTCTG  400

seq1  TGGGCATCTGCACACACATGCACACAGTCCCTGCCAACATACACACCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATCTGCACACACATGCACACAGTCCCTGCCAACATACACACCACT  450

seq1  GTACATATATGCACATGGTTCCCACCTACATACACGTATTAAAAGTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATATATGCACATGGTTCCCACCTACATACACGTATTAAAAGTAAGG  500

seq1  TTAATCTTTTAAAAAATTTGTGAAAGCCTGATGTGATGGCACACATCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTTTAAAAAATTTGTGAAAGCCTGATGTGATGGCACACATCTGA  550

seq1  TGTCACAGCATCCCTATAGTGAGGTGGGAAGCAGCCTGGCGAACATAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGCATCCCTATAGTGAGGTGGGAAGCAGCCTGGCGAACATAGCC  600

seq1  ATAT-AACCCAGAAACCAGAAAGACACACACACACACACACACACACACA  649
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAACCCAGAAACCAGAAAGACACACACACACACACACACACACACA  650

seq1  CACACACACACACACACACACACACACACAGTTCTCATTCCATGCCAGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACAGTTCTCATTCCATGCCAGGC  700

seq1  ACACCTCCAAGCTAGAGTCATTTGGGAAGACAGACTCTCAAGTGAGAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCCAAGCTAGAGTCATTTGGGAAGACAGACTCTCAAGTGAGAAAA  750

seq1  TGCCTCTGAGTGACT-GGCAAGAAGGCGAGGGCAGCGTGCATTTTCTTAG  798
      ||||||||||||||| |||||||| |||||||||||||||| ||||||||
seq2  TGCCTCTGAGTGACTGGGCAAGAAAGCGAGGGCAGCGTGCA-TTTCTTAG  799

seq1  AGATTGATATGGGAGGGTTGGGCCCCATTGTAGGTGGTGCTATGCCTGAG  848
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGATTGATATGGGAGGGTTGGGCCCCATTGTA-GTGGTGCTATGCCTGAG  848

seq1  CTGAGCAAGCCAGGAAGGAGCACTCTCCCACAGCCTCTCCATCAGCTCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAAGCCAGGAAGGAGCACTCTCCCACAGCCTCTCCATCAGCTCCT  898

seq1  GCATCTAGGTTCTGCCCACGATGAACTACAAGCTGCAGTATGAAATAAAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTAGGTTCTGCCCACGATGAACTACAAGCTGCAGTATGAAATAAAC  948

seq1  CC--TTCCCTCCCAAAGTTTCTTTTGGTCATGGTGCTTATCACAGCAGTA  996
      ||  | |||||||||||||   |||||||||||||||||||||||| |||
seq2  CCCTTCCCCTCCCAAAGTT--CTTTGGTCATGGTGCTTATCACAGCCGTA  996

seq1  GAAACCCTCAGATAGACATGAAGTAGGAGAAAGACAAACTCTAAGAAGCA  1046
       ||||||||| ||||   || ||||||  ||| ||||||||||   || |
seq2  AAAACCCTCA-ATAG--CTG-AGTAGGGAAAAAACAAACTCTA--GAGAA  1040

seq1  TCACTGCCCTTTATCAGCCACCTCTACTCCCCCTGGCGCGTCTGACATCT  1096
      |  |||||| |||| || |||| ||  ||||||||| |||  ||||||||
seq2  TACCTGCCC-TTAT-AG-CACC-CTTATCCCCCTGG-GCGCTTGACATCT  1085

seq1  GGA  1099
      |||
seq2  GGA  1088

seq1: chr12_102316511_102317288
seq2: B6Ng01-064N08.g_67_843 (reverse)

seq1  CACATCTTTAGTCCCAATATCCAGGAGGTAGATGCAGGTGGATGTCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTTAGTCCCAATATCCAGGAGGTAGATGCAGGTGGATGTCAGAG  50

seq1  TTTAAGGACAGCTTTGTGTTTCAAAATTTAATATGTAGCCCTAGTACTTT  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTT-AGGACAGCTTTGTGTTTCAAAATTTAATATGTAGCCCTAGTACTTT  99

seq1  GATTATACATTATGTACTTCCAGACTGCTAAATTTTCAAATAATAATCTG  150
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GATTATACATTATGTACTCCCAGACTGCTAAATTTTCAAATAATAATCTG  149

seq1  AATAACTCAGATTCATGGAGAAAAGGAGGAAAATATTACCATACTCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTCAGATTCATGGAGAAAAGGAGGAAAATATTACCATACTCAATG  199

seq1  TCTTTGAAAGACTTTTTTTCCAGGGGGCAGGGGAAACAATTACTAGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAAAGACTTTTTTTCCAGGGGGCAGGGGAAACAATTACTAGAGGT  249

seq1  CAAACCCACTCACAATAACTTTTTAAGTTTCCTTTTCTTCTCTTTTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCACTCACAATAACTTTTTAAGTTTCCTTTTCTTCTCTTTTGAGA  299

seq1  AAGGGTCTTTCATGAAGCTTAAGCTAGTCTAGAACTAGAGATACTTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCTTTCATGAAGCTTAAGCTAGTCTAGAACTAGAGATACTTCTGC  349

seq1  TTCAAGCTCCCCAAACATTCTGTTTACCAGAAAGACTATAAATTTATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCTCCCCAAACATTCTGTTTACCAGAAAGACTATAAATTTATGCC  399

seq1  ATTTAATTTTCTACTGGACAATAACCCATTTTATGGGAAAAACAAATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTTTCTACTGGACAATAACCCATTTTATGGGAAAAACAAATACT  449

seq1  TCCCATTTTCCCAGGCATGATGGCAGACACTTACATCTGTAGACCCTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTTTCCCAGGCATGATGGCAGACACTTACATCTGTAGACCCTGTC  499

seq1  CTTGGGAGATGAAGGTAGGAGGATAGGAATTCAAGACCAGTCTTGGCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGATGAAGGTAGGAGGATAGGAATTCAAGACCAGTCTTGGCTAC  549

seq1  ATGAGACCCTGCAGCTCTTGTAGTGGACTGGGGTTCAGTTTTCAGAACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACCCTGCAGCTCTTGTAGTGGACTGGGGTTCAGTTTTCAGAACCC  599

seq1  ACATGGTAGCTCATGACAGTGTAATTCCAGGTCTAAGGGTCTTCTGACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTAGCTCATGACAGTGTAATTCCAGGTCTAAGGGTCTTCTGACCT  649

seq1  TCAACAGAACCAGAACATACATGCAAACACACACACACACACACACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGAACCAGAACATACATGCAAACACACACACACACACACACACAC  699

seq1  ACACACACATAAGTATAATTTTTCAAAAAAAAAAAAAAGCCTACATTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATAAGTATAATTTTTCAAAAAAAAAAAAAAGCCTACATTGTC  749

seq1  CTCAATGGAGGGGAAAAAAAAAGAATTC  778
      ||||||||||||||||||||||||||||
seq2  CTCAATGGAGGGGAAAAAAAAAGAATTC  777