BAC Information

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BAC

Clone NameB6Ng01-068H19
Chromosome12 (Build37)
Map Location 11,613,426 - 11,788,028
singlet/doubletdoublet
Overlap geneLOC217390, LOC628327
Upstream geneLOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550
Downstream geneLOC627110, LOC100043209, D12Ertd553e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068H19.bB6Ng01-068H19.g
ACCDH887061DH887062
length1,154737
definitionDH887061|Mus musculus domesticus DNA, BAC clone: B6Ng01-068H19, 5' end.DH887062|Mus musculus domesticus DNA, BAC clone: B6Ng01-068H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,613,426 - 11,614,596)(11,787,292 - 11,788,028)
sequence
gaattcatatatacccctccaaataaaaataaatcttcaaacattaaaaa
aataattgtgacctaacagacagacacagaatgctacacaggttaatcaa
aagtttagcaagtacattggaaatgcttaggaggattagttaaaagccat
gccataaagaatattttcaatccctggcattgtggcgcacacctttaatc
ccagcactcgggaggaagaggcaggtggatttctgagttcgaggccagcc
tggtctacagagtgagttccaggacagccagagctacacagagaaaccct
gtctcaaaaaaccaaaaaaaaaaaaaaaaaaaaacccaaaaaatatattt
tcagatgaatcaatttctatttagaaattagaaatcaacaacagaaacaa
gctgagggagctgtatcccacaggaaaacgagaattcaaagctgtatatg
actaaggaagtaaatgtattactaagtccataactcaaaacttagaaaaa
caacacaacaatctaaaaccgagtagtacagcagtggttctcagtctgtg
ggtgctgtctttagagtttgatggtcctctcacaggggtcacccaagacc
atctacataccagatacttacatacaattcataacacttacaaaattaca
gttataaagtagcaatgaaagtaattttgtgattggaggtcatcacaata
taagaaactgtgttaatgggccacagcattagaaaggttgggaattactg
gaataaaggaacattaaagcacagcaaatgaaaacaggaagtgatcatac
aatacagagagtcggcaagaccaaaaccattattgttgacaaatgtgaaa
ttaacagttaaaaatgataagattgatcaacctaaagagagatggtgcag
acagcagtgtatttaaaagttagatggaatgaaagaaatgtctagaacag
tttagtgtattcctcaaaggacttccataattatacagaaatactaggcc
aagtgattcttgtcagtcacatgtatcacctactcatttaaaaatgaatt
ccaggtctacatcagtattctatattgtttgggagtacttggacattatg
atcactataagaaagattcttgtacctattactagagttgttagtctgtt
gttg
gaattcactaatttactcacttggtaagtgggcagtaagcacctatagtt
acaggcattcaaaaaggattgtcttaccaagatagagactcttactttgg
tacagaagatgcatcaacaatgtaagactaactgttggtattgttcatca
aaagcctaggctagtttagtagccaagctttgagcttaaaataggtggga
gaactgactcacactttcctccctccctccctccctccttccctccctcc
ctcctttctcccttccttcctgtcttccttccgctcatccttcattgctt
cctttttctctctcttttgtcatttcttatttcctttccacaaaagaaga
aaaatatcaaattgctcattttccccactattggttatttctagatggcc
tccaggctctctcaagccctcaatcagtatactttatggtcaattttggt
cctcagataaatttgaacaggagggaaggttcactttgaaatgctttgtc
attctcaagactttcacccaggaaatggggtatatagatacagacaatat
cttttggaaccctgggaacctagtaagacagagtctttaaagaaaccaaa
aaggagcttccaataattctgagaggaaaatgaccatgttcttttttctt
aagagaccagcgacaggaaaggaagactttctcctcaggggcgatatact
ccactgaagtgtttcctcacttcgcaaaaatccaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_11613426_11614596
seq2: B6Ng01-068H19.b_46_1199

seq1  GAATTCATATATACCCCTCCAAATAAAAATAAATCTTCAAACATTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATATACCCCTCCAAATAAAAATAAATCTTCAAACATTAAAAA  50

seq1  AATAATTGTGACCTAACAGACAGACACAGAATGCTACACAGGTTAATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTGTGACCTAACAGACAGACACAGAATGCTACACAGGTTAATCAA  100

seq1  AAGTTTAGCAAGTACATTGGAAATGCTTAGGAGGATTAGTTAAAAGCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAGCAAGTACATTGGAAATGCTTAGGAGGATTAGTTAAAAGCCAT  150

seq1  GCCATAAAGAATATTTTCAATCCCTGGCATTGTGGCGCACACCTTTAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAAAGAATATTTTCAATCCCTGGCATTGTGGCGCACACCTTTAATC  200

seq1  CCAGCACTCGGGAGGAAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCGGGAGGAAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCC  250

seq1  TGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCT  300

seq1  GTCTCAAAAAACCAAAAAAAAAAAAAAAAAAAAACCCAAAAAATATATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAAAACCAAAAAAAAAAAAAAAAAAAAACCCAAAAAATATATTT  350

seq1  TCAGATGAATCAATTTCTATTTAGAAATTAGAAATCAACAACAGAAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGAATCAATTTCTATTTAGAAATTAGAAATCAACAACAGAAACAA  400

seq1  GCTGAGGGAGCTGTATCCCACAGGAAAACGAGAATTCAAAGCTGTATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGGAGCTGTATCCCACAGGAAAACGAGAATTCAAAGCTGTATATG  450

seq1  ACTAAGGAAGTAAATGTATTACTAAGTCCATAACTCAAAACTTAGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGAAGTAAATGTATTACTAAGTCCATAACTCAAAACTTAGAAAAA  500

seq1  CAACACAACAATCTAAAACCGAGTAGTACAGCAGTGGTTCTCAGTCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACAACAATCTAAAACCGAGTAGTACAGCAGTGGTTCTCAGTCTGTG  550

seq1  GGTGCTGTCTTTAGAGTTTGATGGTCCTCTCACAGGGGTCACCCAAGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGTCTTTAGAGTTTGATGGTCCTCTCACAGGGGTCACCCAAGACC  600

seq1  ATCTACATACCAGATACTTACATACAATTCATAACACTTACAAAATTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACATACCAGATACTTACATACAATTCATAACACTTACAAAATTACA  650

seq1  GTTATAAAGTAGCAATGAAAGTAATTTTGTGATTGGAGGTCATCACAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAAGTAGCAATGAAAGTAATTTTGTGATTGGAGGTCATCACAATA  700

seq1  TAAGAAACTGTGTTAATGGGCCACAGCATTAGAAAGGTTGGGAATTACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAACTGTGTTAATGGGCCACAGCATTAGAAAGGTTGGGAATTACTG  750

seq1  GAATAAAGGAACATTAAAGCACAGCAAATGAAAACAGGAAGTGATCATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAGGAACATTAAAGCACAGCAAATGAAAACAGGAAGTGATCATAC  800

seq1  AATACAGAGAGTCGGCAAGACCAAAACCATTATTGTTGACAAATGTGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGAGAGTCGGCAAGACCAAAACCATTATTGTTGACAAATGTGAAA  850

seq1  TTAACAGTTAAAAATGATAAGATTGATCAACCTAAAGAGAGATGGTGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGTTAAAAATGATAAGATTGATCAACCTAAAGAGAGATGGTGCAG  900

seq1  ACAGCAGTGTATTTAAAAGTTAGATGGAATGAAAGAAATGTCTAGAACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGTGTATTTAAAAGTTAGATGGAATGAAAGAAATGTCTAGAACAG  950

seq1  TTTAGTGTATTCCTCAAAGGAACTTCCATAATTATACAGAAATACTAGGC  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTAGTGTATTCCTCAAAGG-ACTTCCATAATTATACAGAAATACTAGGC  999

seq1  CAAGTGATTC-TGTCAGTCACATGTATCCACCTACTCATTTAAAAAATGA  1049
      |||||||||| |||||||||||||||| ||||||||||||| ||||||||
seq2  CAAGTGATTCTTGTCAGTCACATGTAT-CACCTACTCATTT-AAAAATGA  1047

seq1  ATTCCAGGGTCTACATCAGTATTCTATATTGTTTGGGGAGTAACTTGGAC  1099
      |||||| ||||||||||||||||||||||||||| |||||| ||||||||
seq2  ATTCCA-GGTCTACATCAGTATTCTATATTGTTT-GGGAGT-ACTTGGAC  1094

seq1  TATTATGATCAACCATATAAGAAAAGGATTCTTGTACCTAATACTAGGAG  1149
       ||||||||||    |||||||||  |||||||||||||| ||||| |||
seq2  -ATTATGATCA---CTATAAGAAA--GATTCTTGTACCTATTACTA-GAG  1137

seq1  TTTTGTTAGTCTTTGGTTGTTG  1171
        ||||||||||   |||||||
seq2  --TTGTTAGTCT---GTTGTTG  1154

seq1: chr12_11787292_11788028
seq2: B6Ng01-068H19.g_67_803 (reverse)

seq1  TTTTGTATTTTTGAGAAGAAAGGAAACACTGCAGTGGAGTAAATTCACCC  50
      ||||| ||||||| ||||  |||||||||| |||||||||| ||   |||
seq2  TTTTGGATTTTTGCGAAGTGAGGAAACACTTCAGTGGAGTATATCGCCCC  50

seq1  TGAGGAGAAAGTC-TCCTTTCC-GTCCCTGGTCCTCTTAAGGAAAAATAA  98
      ||||||||||||| |||||||| ||| ||||| |||||||| ||||| ||
seq2  TGAGGAGAAAGTCTTCCTTTCCTGTCGCTGGT-CTCTTAAGAAAAAAGAA  99

seq1  CATGGTCATTTTCCTCTCCAAATTATTGGAAGACCATTTTTGGTTTCTTT  148
      ||||||||||||||||||  ||||||||||||  | ||||||||||| ||
seq2  CATGGTCATTTTCCTCTCAGAATTATTGGAAGCTCCTTTTTGGTTTC-TT  148

seq1  TTAAAAGTCTGTCTTACTTGGTTCCCAGGGTGCTTAAAGATATTGTCTGT  198
      | || | ||||||||||| |||||||||||| |  |||||||||||||||
seq2  TAAAGACTCTGTCTTACTAGGTTCCCAGGGTTCCAAAAGATATTGTCTGT  198

seq1  ATCATTAAACCCCATTTCCTGGGTGAAAGTCTTGAGAATGACAAAGCATT  248
      |||  || ||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATATACCCCATTTCCTGGGTGAAAGTCTTGAGAATGACAAAGCATT  248

seq1  TCAAAGTGAACCTTCCCTCCTGTTCAAATTTATCTGAGGACCAAAAGTGA  298
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCAAAGTGAACCTTCCCTCCTGTTCAAATTTATCTGAGGACCAAAATTGA  298

seq1  CCATAAAGTATACTGACTGAGGGCTTGGGAGAGCCTGGAGGCCATCTAGA  348
      |||||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  CCATAAAGTATACTGATTGAGGGCTTGAGAGAGCCTGGAGGCCATCTAGA  348

seq1  AATTACTGATACTGGGGAAAATGAGCATTTTGATATTTTTCTTATTTTGT  398
      ||| ||  ||| ||||||||||||||| ||||||||||||||| ||||||
seq2  AATAACCAATAGTGGGGAAAATGAGCAATTTGATATTTTTCTTCTTTTGT  398

seq1  GGAAAGGAAATAAGAAATGACAAAAGAGAGAGAAAAAGGAAGGAAGGAAG  448
      |||||||||||||||||||||||||||||||||||||||||| || ||||
seq2  GGAAAGGAAATAAGAAATGACAAAAGAGAGAGAAAAAGGAAGCAATGAAG  448

seq1  GAAGAGAGGAAGGAAGGCAGGAAGGAAAGGAGAAAGGAGGGAGGGAGGGA  498
      || ||| ||||||||| |||||||||| ||||||||||||||||||||||
seq2  GATGAGCGGAAGGAAGACAGGAAGGAAGGGAGAAAGGAGGGAGGGAGGGA  498

seq1  AGGAGGGAGGGAGGGAGGGAGGAAAGTGTGAGTCAGTTCTCCCACCTATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGAGGGAGGGAGGGAGGAAAGTGTGAGTCAGTTCTCCCACCTATT  548

seq1  TTAAGCTCAAAGCTTGGCTACTAAACTAGCCTAGGCTTTTGATGAACAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTCAAAGCTTGGCTACTAAACTAGCCTAGGCTTTTGATGAACAAT  598

seq1  ACCAACAGTTAGTCTTACATTGTTGATGCATCTTCTGTACCAAAGTAAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAGTTAGTCTTACATTGTTGATGCATCTTCTGTACCAAAGTAAGA  648

seq1  GTCTCTATCTTGGTAAGACAATCCTTTTTGAATGCCTGTAACTATAGGTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTATCTTGGTAAGACAATCCTTTTTGAATGCCTGTAACTATAGGTG  698

seq1  CTTACTGCCCACTTACCAAGTGAGTAAATTAGTGAATTC  737
      |||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGCCCACTTACCAAGTGAGTAAATTAGTGAATTC  737