BAC Information

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BAC

Clone NameB6Ng01-070E02
Chromosome12 (Build37)
Map Location 34,913,629 - 35,046,322
singlet/doubletdoublet
Overlap genenone
Upstream geneAtxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1
Downstream geneHdac9, 4921508M14Rik, Prps1l1, Snx13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070E02.bB6Ng01-070E02.g
ACCDH888315DH888316
length1,2231,127
definitionDH888315|Mus musculus domesticus DNA, BAC clone: B6Ng01-070E02, 5' end.DH888316|Mus musculus domesticus DNA, BAC clone: B6Ng01-070E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,913,629 - 34,914,854)(35,045,176 - 35,046,322)
sequence
gaattctaatcattttagactaccctatttttacaattgataaaatctac
atttttttttctggacaaatttatcaaaatgtcaaatttatttttgtctt
cctcacatacagagtgaaattttctctaggcaaataaggggaaggcagta
aaaaaatatacgaaaaccactttcaacattcatttctaacttcacataag
ctaagtccattactatggtaactgcggtggtttgaataggcatggcccca
ccaactcatgtgtttgaatgcatggcccataaggcacagcactatcagga
ggtgtggccttgttggagtaggtatagccttgttggaggaagtctgtcac
tctgggggcagattttgaggtttcatatactcaagctaggtctagtgtgc
atacagtaatttctgctgcctacagatcaagatgttgaaatctcagctcc
ttctacagcatgcttctacagtttgcctgtatactgccatgcttctcacc
atgactttagtgaactaaacatctgaagctgtaagccattcccaattaaa
tattttcctatataagacttgccatggtcatggtgtctcttcagagcaat
agaaactccaactaagacaataagagtaggcattaaaaattcaaaacatg
caaaataacctgactattttatttgtattgtttataatcattgtctcata
agtggtgaaaatgtacacttacatttatgtgacacttctgtggccaagta
ggtagtcaaggaatggtaaaatgctacccataattccaaagggttcaaag
tcatgaaaataagagcccagcaatcactggtaagataacacaagaggcac
acactacatgtttcattcaggtagtgcagagcctccaacagaaaaaattc
atgttatttatgcacatgtcaagaaaaaaattaaactaatgccctcataa
caccaacatatcttattggtcattcttttaatttttcaagattaaagtaa
aaacatgatggatgcacatatttttttccaatatctaatccaatttagat
tcttgattgattatttttagctagaacaatatttttaggacaccagcaaa
atgctttttgctagcaattagccataaaacaaccaaatttggactgagtg
tttcataccagctgattcagatgtggttttcgaagttctattcagcacgc
tgctactgagaacttggtcttac
gaattcagtgagtaggagtcgttggtgcaatgctaagttcatcatgaact
tatttgaaagaggcgaggtatagggtctgccatagtgaccaccgacagat
gagtgaacaaattaaagatggtgccgagctacaattggatattatttctc
tataaagagatgagaacccctgtcatttgggacaagatagatgagtctgt
gattattatgtgaagtaaaccaggcagagacacacaaatgatatgcacta
ctgctcatgcagaatgtaggtatttagtacgtatactgtgagattatgta
agtggggaaatcatggtctacaatgataatgcattctctaaatctctaaa
cataaactccctttcaatcttggaattcctgacccttagacatttccctt
acctttaatttctcttacagtgctcaatcactggctccttcaccaagatt
gacaactgggaattcatacattttttttttaagttagaatcactgaaaaa
tgaaaactctgatttataaaatggagtgacatctatcaacctaagcatat
tgttgtataaacatatcaaaactcatgtgtgttttaaatgatgtggtctt
gtgtaaatcctatgacgaaagtgaatttagagcaaaatattctcttctgt
gagaagctccgagaggcaagaaggtagggcttctccgaaggttccagaga
ctggggactccttggtcttcatctcccaatctgtagtaaggtaaagaaag
cagaagatgcaaaagcagtaggaaattcgctgctgtagtattttacctgt
gattcgtaaatactgaaggttctattttatttggtgtattagaatatttt
gaaatatttagaatactggcttatagtgtggccaaccttaggggaaggat
tcttttccatccctgttaattactaaagattcttggatgtctcctaagta
acttagagttcttagtctttggcattaaagcaagttcaggaaacttgtga
gtaaatgacttttattcttggatgatgtgttgatactgtatattttttaa
tggtaactttccctctcaaaataaaagttactgttaagttgtgtgtggca
gcatggcatgggtaagctgtttcctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_34913629_34914854
seq2: B6Ng01-070E02.b_44_1266

seq1  GAATTCTAATCATTTTAGACTACCCTATTTTTACAATTGATAAAATCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATCATTTTAGACTACCCTATTTTTACAATTGATAAAATCTAC  50

seq1  ATTTTTTTTTCTGGACAAATTTATCAAAATGTCAAATTTATTTTTGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTCTGGACAAATTTATCAAAATGTCAAATTTATTTTTGTCTT  100

seq1  CCTCACATACAGAGTGAAATTTTCTCTAGGCAAATAAGGGGAAGGCAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACATACAGAGTGAAATTTTCTCTAGGCAAATAAGGGGAAGGCAGTA  150

seq1  AAAAAATATACGAAAACCACTTTCAACATTCATTTCTAACTTCACATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATATACGAAAACCACTTTCAACATTCATTTCTAACTTCACATAAG  200

seq1  CTAAGTCCATTACTATGGTAACTGCGGTGGTTTGAATAGGCATGGCCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTCCATTACTATGGTAACTGCGGTGGTTTGAATAGGCATGGCCCCA  250

seq1  CCAACTCATGTGTTTGAATGCATGGCCCATAAGGCACAGCACTATCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCATGTGTTTGAATGCATGGCCCATAAGGCACAGCACTATCAGGA  300

seq1  GGTGTGGCCTTGTTGGAGTAGGTATAGCCTTGTTGGAGGAAGTCTGTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGCCTTGTTGGAGTAGGTATAGCCTTGTTGGAGGAAGTCTGTCAC  350

seq1  TCTGGGGGCAGATTTTGAGGTTTCATATACTCAAGCTAGGTCTAGTGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGGCAGATTTTGAGGTTTCATATACTCAAGCTAGGTCTAGTGTGC  400

seq1  ATACAGTAATTTCTGCTGCCTACAGATCAAGATGTTGAAATCTCAGCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTAATTTCTGCTGCCTACAGATCAAGATGTTGAAATCTCAGCTCC  450

seq1  TTCTACAGCATGCTTCTACAGTTTGCCTGTATACTGCCATGCTTCTCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAGCATGCTTCTACAGTTTGCCTGTATACTGCCATGCTTCTCACC  500

seq1  ATGACTTTAGTGAACTAAACATCTGAAGCTGTAAGCCATTCCCAATTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTTAGTGAACTAAACATCTGAAGCTGTAAGCCATTCCCAATTAAA  550

seq1  TATTTTCCTATATAAGACTTGCCATGGTCATGGTGTCTCTTCAGAGCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCTATATAAGACTTGCCATGGTCATGGTGTCTCTTCAGAGCAAT  600

seq1  AGAAACTCCAACTAAGACAATAAGAGTAGGCATTAAAAATTCAAAACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTCCAACTAAGACAATAAGAGTAGGCATTAAAAATTCAAAACATG  650

seq1  CAAAATAACCTGACTATTTTATTTGTATTGTTTATAATCATTGTCTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAACCTGACTATTTTATTTGTATTGTTTATAATCATTGTCTCATA  700

seq1  AGTGGTGAAAATGTACACTTACATTTATGTGACACTTCTGTGGCCAAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGAAAATGTACACTTACATTTATGTGACACTTCTGTGGCCAAGTA  750

seq1  GGTAGTCAAGGAATGGTAAAATGCTACCCATAATTCCAAAGGGTTCAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTCAAGGAATGGTAAAATGCTACCCATAATTCCAAAGGGTTCAAAG  800

seq1  TCATGAAAATAAGAGCCCAGCAATCACTGGTAAGATAACACAAGAGGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAAATAAGAGCCCAGCAATCACTGGTAAGATAACACAAGAGGCAC  850

seq1  ACACTACATGTTTCATTCAGGTAGTGCAGAGCCTCCAACAGAAAAAATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACATGTTTCATTCAGGTAGTGCAGAGCCTCCAACAGAAAAAATTC  900

seq1  ATGTTATTTATGCACATGTCAAGAAAAAAATTAAACTAATGCCCTCATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATTTATGCACATGTCAAGAAAAAAATTAAACTAATGCCCTCATAA  950

seq1  CACCAACATATCTTATTGGTCATTCTTTTAATTTTTCAAGATTAAAGTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACATATCTTATTGGTCATTCTTTTAATTTTTCAAGATTAAAGTAA  1000

seq1  AAACATGATGGATGCACATATTTTTTGCAAATATCTAATCCAATTTTAGA  1050
      |||||||||||||||||||||||||| | |||||||||||||| ||||||
seq2  AAACATGATGGATGCACATATTTTTTTCCAATATCTAATCCAA-TTTAGA  1049

seq1  TTCTTGATTGATTA-TTTTAGCTAGAACTATATTTTTAGGACA-CAGCAA  1098
      |||||||||||||| ||||||||||||| |||||||||||||| ||||||
seq2  TTCTTGATTGATTATTTTTAGCTAGAACAATATTTTTAGGACACCAGCAA  1099

seq1  AATGCTTTTTGCATAGC-ATTAGCCATAAACCATCCAAATATTGACTGAG  1147
      |||||||||||| |||| |||||||||||| || |||||| | |||||||
seq2  AATGCTTTTTGC-TAGCAATTAGCCATAAAACAACCAAATTTGGACTGAG  1148

seq1  TGTTTCATACCAGCTGATTCAGATGTGGTTTTCAGAAGTTCTATTTCAGC  1197
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  TGTTTCATACCAGCTGATTCAGATGTGGTTTTC-GAAGTTCTA-TTCAGC  1196

seq1  ACGCTGCTAACTGAGAACTTGGTCCTTAC  1226
      |||||||| |||||||||||||| |||||
seq2  ACGCTGCT-ACTGAGAACTTGGT-CTTAC  1223

seq1: chr12_35045176_35046322
seq2: B6Ng01-070E02.g_67_1193 (reverse)

seq1  GCAGGAAACAGCTTTTCCCCATGCCACTGCCTGGCCACACACAAACTGTA  50
      ||||||||||||  || ||||||||| |||   ||||||||| |||| ||
seq2  GCAGGAAACAGC--TTACCCATGCCA-TGC--TGCCACACAC-AACT-TA  43

seq1  ACAGTAAACCTTTTATTTTTGAGAAGGGAAAAGTGTAACCATTAAAAAAT  100
      |||||||  |||||| ||||||| |||||||   || |||||||||||||
seq2  ACAGTAA--CTTTTA-TTTTGAG-AGGGAAA---GTTACCATTAAAAAAT  86

seq1  ATACAGTATCAACACATCATCCAAGAATTAAAAGTCATTTACTCACAAGT  150
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATACAGTATCAACACATCATCCAAGAA-TAAAAGTCATTTACTCACAAGT  135

seq1  TTCCTGAACCTTGCTTTAATGCCAAAGACTAAGAACTTCCTAAGTTAACT  200
      |||||||| ||||||||||||||||||||||||||||  ||||||| |||
seq2  TTCCTGAA-CTTGCTTTAATGCCAAAGACTAAGAACT--CTAAGTT-ACT  181

seq1  TAGGAGACATCCAAGAATCTTTAGTAATTAACAGGGATGGAAAAGAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGACATCCAAGAATCTTTAGTAATTAACAGGGATGGAAAAGAATCC  231

seq1  TTCCCCTAAGGTTGGCCAACACTATAAGCCAGTATTCTAAATATTTCAAA  300
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTCCCCTAAGGTTGGCC-ACACTATAAGCCAGTATTCTAAATATTTCAAA  280

seq1  ATATTCTAATACACCAAATAAAATAGAACCTTCAGTATTTACGAATCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTAATACACCAAATAAAATAGAACCTTCAGTATTTACGAATCACA  330

seq1  GGTAAAATACTACAGCAGCGAATTTCCTACTGCTTTTGCATCTTCTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAATACTACAGCAGCGAATTTCCTACTGCTTTTGCATCTTCTGCTT  380

seq1  TCTTTACCTTACTACAGATTGGGAGATGAAGACCAAGGAGTCCCCAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACCTTACTACAGATTGGGAGATGAAGACCAAGGAGTCCCCAGTCT  430

seq1  CTGGAACCTTCGGAGAAGCCCTACCTTCTTGCCTCTCGGAGCTTCTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACCTTCGGAGAAGCCCTACCTTCTTGCCTCTCGGAGCTTCTCACA  480

seq1  GAAGAGAATATTTTGCTCTAAATTCACTTTCGTCATAGGATTTACACAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAATATTTTGCTCTAAATTCACTTTCGTCATAGGATTTACACAAG  530

seq1  ACCACATCATTTAAAACACACATGAGTTTTGATATGTTTATACAACAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATCATTTAAAACACACATGAGTTTTGATATGTTTATACAACAATA  580

seq1  TGCTTAGGTTGATAGATGTCACTCCATTTTATAAATCAGAGTTTTCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGGTTGATAGATGTCACTCCATTTTATAAATCAGAGTTTTCATTT  630

seq1  TTCAGTGATTCTAACTTAAAAAAAAAATGTATGAATTCCCAGTTGTCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGATTCTAACTTAAAAAAAAAATGTATGAATTCCCAGTTGTCAAT  680

seq1  CTTGGTGAAGGAGCCAGTGATTGAGCACTGTAAGAGAAATTAAAGGTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGAAGGAGCCAGTGATTGAGCACTGTAAGAGAAATTAAAGGTAAG  730

seq1  GGAAATGTCTAAGGGTCAGGAATTCCAAGATTGAAAGGGAGTTTATGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGTCTAAGGGTCAGGAATTCCAAGATTGAAAGGGAGTTTATGTTT  780

seq1  AGAGATTTAGAGAATGCATTATCATTGTAGACCATGATTTCCCCACTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTAGAGAATGCATTATCATTGTAGACCATGATTTCCCCACTTAC  830

seq1  ATAATCTCACAGTATACGTACTAAATACCTACATTCTGCATGAGCAGTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTCACAGTATACGTACTAAATACCTACATTCTGCATGAGCAGTAG  880

seq1  TGCATATCATTTGTGTGTCTCTGCCTGGTTTACTTCACATAATAATCACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATCATTTGTGTGTCTCTGCCTGGTTTACTTCACATAATAATCACA  930

seq1  GACTCATCTATCTTGTCCCAAATGACAGGGGTTCTCATCTCTTTATAGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATCTATCTTGTCCCAAATGACAGGGGTTCTCATCTCTTTATAGAG  980

seq1  AAATAATATCCAATTGTAGCTCGGCACCATCTTTAATTTGTTCACTCATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATCCAATTGTAGCTCGGCACCATCTTTAATTTGTTCACTCATC  1030

seq1  TGTCGGTGGTCACTATGGCAGACCCTATACCTCGCCTCTTTCAAATAAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGGTGGTCACTATGGCAGACCCTATACCTCGCCTCTTTCAAATAAGT  1080

seq1  TCATGATGAACTTAGCATTGCACCAACGACTCCTACTCACTGAATTC  1147
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATGAACTTAGCATTGCACCAACGACTCCTACTCACTGAATTC  1127