BAC Information

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BAC

Clone NameB6Ng01-071J14
Chromosome12 (Build37)
Map Location 103,089,493 - 103,242,609
singlet/doubletdoublet
Overlap geneTrip11, Atxn3, LOC100040305, LOC100040297, Cpsf2
Upstream gene9030617O03Rik, EG667148, Gpr68, 0610010D24Rik, LOC100040184, Smek1, 4930463M05Rik, Mylf-ps, 4932415G16Rik, Mtac2d1, Fbln5
Downstream geneSlc24a4, Rin3, Lgmn, Golga5, Chga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c, 9030205A07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071J14.bB6Ng01-071J14.g
ACCDH889252DH889253
length1,1131,141
definitionDH889252|Mus musculus domesticus DNA, BAC clone: B6Ng01-071J14, 5' end.DH889253|Mus musculus domesticus DNA, BAC clone: B6Ng01-071J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,241,488 - 103,242,609)(103,089,493 - 103,090,653)
sequence
gaattcatttgtactgtatcgagggtggcaattccccaggttcagtacta
tttttgtaaaaataagcataaaatccaaccactgtttacataaacttaaa
aaacaagttcagaaaggaaaccatttacaacctttaattaaatcacactg
ttaccttataaaaatgcgagcttccacatttgctttttaaaaagaccgag
cattggatggtttcagagacagttaccggaccaatagttaagatgagtct
aaataaaatatgtacagacctggtaacacagcaggctctcctcttgctgg
ctgagacaggctctaaccatgcagctcaggctggcctctaattcacagtc
ctcctacaccagcctcctgagtgctgggattagaagcgcacgtaccacac
tcagcttagaggctttcttttagataacatttattcaaatgatgaggtta
taaattcaaagtgaacaacaacaaaaatcttaataaacaagaaatgggag
aaataaaaatgtgtttctaaactaactgtgtactgcctcccactgcacag
gtagagagggctccacgaggagcagagctcacaggagcagccgcacgtca
ccccttctcaagaaaaatgttccacgaggcttcttttatcgtacatagca
tactctttctatacaattctcccttcttattccagaaaacacaagaaact
gtccacacaaatgtgcacacaccagtttctgtaaggccatcaacaggttt
gctaagttgcactgttcttttgtttgtttgtttgttttctcctttttctt
cttcaagtaatgagctcttggaacaagggacctgcagaggacaccaatcc
ccttggctctgggcctgtctcttcgttgggcctctagcattcagagctag
gcaagagcatttacaaaataggttctatttacattttctttctttcttta
ttcaggacagagaatcaaacctagggccttgcacatgctagcagagctct
accactgagctacacccaggcccttgattcatattttcaaaatctagtac
atgctcacgtttctgcagattcttttttgtatgttacaaacagacagcaa
gtttagcctcaga
gaattcctaatttgaggccaccctgaaatctgtgtgtgtgcttgaaagcc
agcaagcctaagctttctgaaaagagaaaagggaaggggagagagaactg
cacaaggctcacagcttatttgtattggacaatatcccctaccacatgaa
ccatatagtaatctacattacactctctcttgtttaaacaaactagaaaa
acagaaatcgagctgctaagccaggcaaccgtttagcagggcaagtgctg
ctctgtgagcctggcgggcgaccagggtcttatctctggaatccacagaa
aggtggaaggacagaactgactagaaaattttcttccgacctctatgtgc
agcacagcccgaatatacggcccagtgcacatcgtatgtacacagaataa
caactaataaaaaattgttttataaacgagctgggcgttatggtttgcac
ctgcagtccccgctgctgaggaggccaaggcagaaggatcagctgagctg
agactctaaagccagcttgggcaacatagtaaggccccatctcaaagaat
accaaccaaccaaaggtctgcatgataaataaacatctccagagtaaaac
tcataagacaaaggttctgatgaaagatcttttaataatgtaagttagaa
agccaaagcatccttaaagccaaagtttaaaactcactgttggttctgac
ctaatgaccatggaatgcacaggactgcttcagacccatgtgcgtaaatg
tacatttgagcagacaaaagagaaataaaaggacagagaggagagcatgg
gaaggaatggattaattttgagagctcagaagaaaaggaagtcacacacc
cattcctaagtcccttgagactcatctctttctccagcaacactcactct
cttcccctcagaaatcctgactatttctctacagaaactgaactcaaacc
acaatttgaaatcagaactatatttatatgggcaggcaaagtattctatc
agaatgggttctagtccaatataaagcgctgtgatatcacacacacccaa
atacttcttagaatgcaagctaggctggagcactgtcacttagcaatgat
cagctggactgagtctatctggaaaagctaactctagtgcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_103241488_103242609
seq2: B6Ng01-071J14.b_45_1157 (reverse)

seq1  TCTGAGGCTAAACTTTTGCTGTCTTGTTTTGTAACATAC-AAAAAGAATC  49
      |||||||||||||  |||||||||   |||||||||||| ||||||||||
seq2  TCTGAGGCTAAAC--TTGCTGTCT--GTTTGTAACATACAAAAAAGAATC  46

seq1  TGCCAGAAAACGTGAGCATGTACTAGATTTTGAAAAATATGAATCAAGGG  99
      || ||| ||||||||||||||||||||||||| |||||||||||||||||
seq2  TG-CAG-AAACGTGAGCATGTACTAGATTTTG-AAAATATGAATCAAGGG  93

seq1  CCTGGGGTGTAGCTCAGTGGTAGAGCTCTTGCCTAGCATGTGCAAGGCCC  149
      ||| |||||||||||||||||||||||||   ||||||||||||||||||
seq2  CCT-GGGTGTAGCTCAGTGGTAGAGCTCT--GCTAGCATGTGCAAGGCCC  140

seq1  TAGGTTTGATTCTCTGTCCTGAATAAAGAAAGAAAGAAAATGTAAATAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTGATTCTCTGTCCTGAATAAAGAAAGAAAGAAAATGTAAATAGA  190

seq1  ACCTATTTTGTAAATGCTCTTGCCTAGCTCTGAATGCTAGAGGCCCAACG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTTTGTAAATGCTCTTGCCTAGCTCTGAATGCTAGAGGCCCAACG  240

seq1  AAGAGACAGGCCCAGAGCCAAGGGGATTGGTGTCCTCTGCAGGTCCCTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACAGGCCCAGAGCCAAGGGGATTGGTGTCCTCTGCAGGTCCCTTG  290

seq1  TTCCAAGAGCTCATTACTTGAAGAAGAAAAAGGAGAAAACAAACAAACAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGAGCTCATTACTTGAAGAAGAAAAAGGAGAAAACAAACAAACAA  340

seq1  ACAAAAGAACAGTGCAACTTAGCAAACCTGTTGATGGCCTTACAGAAACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAACAGTGCAACTTAGCAAACCTGTTGATGGCCTTACAGAAACT  390

seq1  GGTGTGTGCACATTTGTGTGGACAGTTTCTTGTGTTTTCTGGAATAAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGCACATTTGTGTGGACAGTTTCTTGTGTTTTCTGGAATAAGAA  440

seq1  GGGAGAATTGTATAGAAAGAGTATGCTATGTACGATAAAAGAAGCCTCGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAATTGTATAGAAAGAGTATGCTATGTACGATAAAAGAAGCCTCGT  490

seq1  GGAACATTTTTCTTGAGAAGGGGTGACGTGCGGCTGCTCCTGTGAGCTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATTTTTCTTGAGAAGGGGTGACGTGCGGCTGCTCCTGTGAGCTCT  540

seq1  GCTCCTCGTGGAGCCCTCTCTACCTGTGCAGTGGGAGGCAGTACACAGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCGTGGAGCCCTCTCTACCTGTGCAGTGGGAGGCAGTACACAGTT  590

seq1  AGTTTAGAAACACATTTTTATTTCTCCCATTTCTTGTTTATTAAGATTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGAAACACATTTTTATTTCTCCCATTTCTTGTTTATTAAGATTTT  640

seq1  TGTTGTTGTTCACTTTGAATTTATAACCTCATCATTTGAATAAATGTTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTCACTTTGAATTTATAACCTCATCATTTGAATAAATGTTAT  690

seq1  CTAAAAGAAAGCCTCTAAGCTGAGTGTGGTACGTGCGCTTCTAATCCCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGAAAGCCTCTAAGCTGAGTGTGGTACGTGCGCTTCTAATCCCAG  740

seq1  CACTCAGGAGGCTGGTGTAGGAGGACTGTGAATTAGAGGCCAGCCTGAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGGAGGCTGGTGTAGGAGGACTGTGAATTAGAGGCCAGCCTGAGC  790

seq1  TGCATGGTTAGAGCCTGTCTCAGCCAGCAAGAGGAGAGCCTGCTGTGTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGTTAGAGCCTGTCTCAGCCAGCAAGAGGAGAGCCTGCTGTGTTA  840

seq1  CCAGGTCTGTACATATTTTATTTAGACTCATCTTAACTATTGGTCCGGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCTGTACATATTTTATTTAGACTCATCTTAACTATTGGTCCGGTA  890

seq1  ACTGTCTCTGAAACCATCCAATGCTCGGTCTTTTTAAAAAGCAAATGTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTCTGAAACCATCCAATGCTCGGTCTTTTTAAAAAGCAAATGTGG  940

seq1  AAGCTCGCATTTTTATAAGGTAACAGTGTGATTTAATTAAAGGTTGTAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCGCATTTTTATAAGGTAACAGTGTGATTTAATTAAAGGTTGTAAA  990

seq1  TGGTTTCCTTTCTGAACTTGTTTTTTAAGTTTATGTAAACAGTGGTTGGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCCTTTCTGAACTTGTTTTTTAAGTTTATGTAAACAGTGGTTGGA  1040

seq1  TTTTATGCTTATTTTTACAAAAATAGTACTGAACCTGGGGAATTGCCACC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCTTATTTTTACAAAAATAGTACTGAACCTGGGGAATTGCCACC  1090

seq1  CTCGATACAGTACAAATGAATTC  1122
      |||||||||||||||||||||||
seq2  CTCGATACAGTACAAATGAATTC  1113

seq1: chr12_103089493_103090653
seq2: B6Ng01-071J14.g_66_1206

seq1  GAATTCCTAATTTGAGGCCACCCTGAAATCTGTGTGTGTGCTTGAAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATTTGAGGCCACCCTGAAATCTGTGTGTGTGCTTGAAAGCC  50

seq1  AGCAAGCCTAAGCTTTCTGAAAAGAGAAAAGGGAAGGGGAGAGAGAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCTAAGCTTTCTGAAAAGAGAAAAGGGAAGGGGAGAGAGAACTG  100

seq1  CACAAGGCTCACAGCTTATTTGTATTGGACAATATCCCCTACCACATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGCTCACAGCTTATTTGTATTGGACAATATCCCCTACCACATGAA  150

seq1  CCATATAGTAATCTACATTACACTCTCTCTTGTTTAAACAAACTAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATAGTAATCTACATTACACTCTCTCTTGTTTAAACAAACTAGAAAA  200

seq1  ACAGAAATCGAGCTGCTAAGCCAGGCAACCGTTTAGCAGGGCAAGTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATCGAGCTGCTAAGCCAGGCAACCGTTTAGCAGGGCAAGTGCTG  250

seq1  CTCTGTGAGCCTGGCGGGCGACCAGGGTCTTATCTCTGGAATCCACAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGAGCCTGGCGGGCGACCAGGGTCTTATCTCTGGAATCCACAGAA  300

seq1  AGGTGGAAGGACAGAACTGACTAGAAAATTTTCTTCCGACCTCTATGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAAGGACAGAACTGACTAGAAAATTTTCTTCCGACCTCTATGTGC  350

seq1  AGCACAGCCCGAATATACGGCCCAGTGCACATCGTATGTACACAGAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCCCGAATATACGGCCCAGTGCACATCGTATGTACACAGAATAA  400

seq1  CAACTAATAAAAAATTGTTTTATAAACGAGCTGGGCGTTATGGTTTGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAATAAAAAATTGTTTTATAAACGAGCTGGGCGTTATGGTTTGCAC  450

seq1  CTGCAGTCCCCGCTGCTGAGGAGGCCAAGGCAGAAGGATCAGCTGAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTCCCCGCTGCTGAGGAGGCCAAGGCAGAAGGATCAGCTGAGCTG  500

seq1  AGACTCTAAAGCCAGCTTGGGCAACATAGTAAGGCCCCATCTCAAAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTAAAGCCAGCTTGGGCAACATAGTAAGGCCCCATCTCAAAGAAT  550

seq1  ACCAACCAACCAAAGGTCTGCATGATAAATAAACATCTCCAGAGTAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCAACCAAAGGTCTGCATGATAAATAAACATCTCCAGAGTAAAAC  600

seq1  TCATAAGACAAAGGTTCTGATGAAAGATCTTTTAATAATGTAAGTTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGACAAAGGTTCTGATGAAAGATCTTTTAATAATGTAAGTTAGAA  650

seq1  AGCCAAAGCATCCTTAAAGCCAAAGTTTAAAACTCACTGTTGGTTCTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAGCATCCTTAAAGCCAAAGTTTAAAACTCACTGTTGGTTCTGAC  700

seq1  CTAATGACCATGGAATGCACAGGACTGCTTCAGACCCATGTGCGTAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGACCATGGAATGCACAGGACTGCTTCAGACCCATGTGCGTAAATG  750

seq1  TACATTTGAGCAGACAAAAGAGAAATAAAAGGACAGAGAGGAGAGCATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTGAGCAGACAAAAGAGAAATAAAAGGACAGAGAGGAGAGCATGG  800

seq1  GAAGGAATGGATTAATTTTGAGAGCTCAGAAGAAAAGGAAGTCACACACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATGGATTAATTTTGAGAGCTCAGAAGAAAAGGAAGTCACACACC  850

seq1  CATTCCTAAGTCCCTTGAGACTCATCTCTTTCTCCAGCAACACTCACTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTAAGTCCCTTGAGACTCATCTCTTTCTCCAGCAACACTCACTCT  900

seq1  CTTCCCCTCAGAAATCCTGACTATTTCTCTACAGAAACTGAACTCAAACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCTCAGAAATCCTGACTATTTCTCTACAGAAACTGAACTCAAACC  950

seq1  ACAATTTGAAATCAGAACTATATTTATATGGGCAGGCAAAGTATTCTTAT  1000
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  ACAATTTGAAATCAGAACTATATTTATATGGGCAGGCAAAGTATTCT--A  998

seq1  TCAGAAATGGGTTCTAGTCCAAATATAACAGCGCTGTGAATAATCACACA  1050
      |||| ||||||||||||||| ||||||| ||||||||||   ||||||||
seq2  TCAG-AATGGGTTCTAGTCC-AATATAA-AGCGCTGTGA--TATCACACA  1043

seq1  CACCCAAATACTTCTTTAGAAATGCAAGCTAGGGCTGGGGAGCACTGTCA  1100
      |||||||||||||| |||| ||||||||||| ||||  ||||||||||| 
seq2  CACCCAAATACTTC-TTAG-AATGCAAGCTA-GGCT--GGAGCACTGTC-  1087

seq1  ACTTAAGCAATGAATCAGCTGAGACTGAGTCTAATCTGGAGAAAGCATAA  1150
      |||| ||||||| |||||||| |||||||||| ||||||| ||||| |||
seq2  ACTT-AGCAATG-ATCAGCTG-GACTGAGTCT-ATCTGGA-AAAGC-TAA  1131

seq1  CTCTAAGTGCG  1161
      |||| ||||||
seq2  CTCT-AGTGCG  1141