BAC Information

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BAC

Clone NameB6Ng01-072L17
Chromosome12 (Build37)
Map Location 119,978,287 - 120,145,034
singlet/doubletdoublet
Overlap geneEG668615, LOC620665, Sp8, Abcb5
Upstream geneRapgef5, Cdca7l, Dnahc11, Sp4, LOC100042993, LOC668611
Downstream geneItgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632, LOC668633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072L17.bB6Ng01-072L17.g
ACCDH890064DH890065
length1,137381
definitionDH890064|Mus musculus domesticus DNA, BAC clone: B6Ng01-072L17, 5' end.DH890065|Mus musculus domesticus DNA, BAC clone: B6Ng01-072L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,143,864 - 120,145,034)(119,978,287 - 119,978,673)
sequence
gaattcaaataataataaaaaaggaaaatgtactatgatacatttgtctg
atatatttaccaagcaaatgcaggcaattaaaagtaagtttattttacca
tatgtatttaaagtaggcaagggaataatagttattgttttattttgttt
gtttgcccagaaatgcatagctttttctttaccttttgcaattcctgtag
aaaatcctgatgtatatagatgttttaagagaggttggttttgttttctg
tttacactttcctccaagcttctgaaggaaactctgtttcttctcagatg
tttgaagataaaaataaagctacattaaagcaggatgcagagctctactc
catgatgttagtcgtcttgggcatagtagctcttgtcacctacttgatgc
aggtaaacctttaattgactaatcagccctgggcagggttacatgtttac
attatcttctctgttccgattaaaaacatccataactgaatgatacaaag
agatttaagaataagtgtggactgttctgtttgttccctagggattgttt
tatggcagagcagaggaaaatttagccatgagattaagacactcggcatt
caaagccatgctctaccaggtcagtaactggagtggagtttttcttcttt
taatttagatttgctgtcaaacattctaacctttcattctttctcatctc
ttgacatagtctttatatcagatcattgaaaagcatagttttgttattgt
tctaggcagcaaaaatctaccattagaattcttatgagcatattcttcta
ataaacacatatcctgggtctggagaaatagttcaacaattaagaatgca
tactgctcttctaataaacctgagttcagttcccagaatccacatcagtg
ggctcacaaccacctttaattttgactctaaagactatgaacatcttctg
gtttctgaaagactgcactcgaatgcacatacccatggggtcacacacac
cccacctcacccaccaagaaaagaaagaaagaaaaagagagtaagtctaa
atccattggaggttcaaaataagaggttcaatctactatgattcattgca
tcatctcccttgatgccaacttattcagggatgaaaa
tttggccattgatgaagtgctatacagctctcacagaaagggcagaagat
ttccaactgaaaattactttcactaaataccgcaaagatattgaaggcag
agagcaggtggagatgggacaaatgacagcagtgtctaacaatgaacctc
tcagttctctgggctggcagacaagactgattagagtaagaacatgaaat
aatgttttcttaaagccagggagcatattgtataaagtgtcaggtacaaa
gagtttgtatgttctttgtggtgaattgagaacctggtgctgcagactgt
acccacagtgtggctgtcacagctaccaggccaaagtgtacacatgcaaa
ttctggtgaggaaagagggatgggggggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_120143864_120145034
seq2: B6Ng01-072L17.b_47_1183 (reverse)

seq1  TTTTCATCCCCTGAAATAACATTGTGCATCAAAGGGAAGATGAATGCAAT  50
      ||||||| ||||| |||||  ||| |||||||  || ||||| |||||||
seq2  TTTTCAT-CCCTG-AATAA-GTTG-GCATCAA--GGGAGATG-ATGCAAT  43

seq1  GAATACTAGTAGATCTGAAACCTCTTATTTTGAAACTTCATAATTTGGAT  100
      ||||  |||||||| || |||||||||||||||| || ||     |||||
seq2  GAATCATAGTAGAT-TG-AACCTCTTATTTTGAACCTCCA----ATGGAT  87

seq1  TTTTAAGACTTTAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCG  150
      ||   ||||||  ||||||| | ||| ||| |||           | || 
seq2  TT---AGACTT--ACTCTCTTTTTCTTTCTTTCT-----------TTTCT  121

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACATGGGTATGTGCATT  200
      ||   ||| ||| | ||| | |||||||||  | ||||||||||||||||
seq2  TG---GTGGGTGAG-GTG-GGGTGTGTGTGACCCCATGGGTATGTGCATT  166

seq1  CGAGTGCAGTTCTTTCAGAAACCAG-AGATGTTCATAGTCTTTAGAGTCA  249
      ||||||||| ||||||||||||||| ||||||||||||||||||||||||
seq2  CGAGTGCAG-TCTTTCAGAAACCAGAAGATGTTCATAGTCTTTAGAGTCA  215

seq1  AAATTAAAGGTGGTTGTGAGCCACCTGATGTGGATTCTGGGAACTGAACT  299
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  AAATTAAAGGTGGTTGTGAGCCCACTGATGTGGATTCTGGGAACTGAACT  265

seq1  CAGGTTTATTAGAAGAGCAGTATGCATTCTTAATTGTTGAACTATTTCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTATTAGAAGAGCAGTATGCATTCTTAATTGTTGAACTATTTCTC  315

seq1  CAGACCCAGGATATGTGTTTATTAGAAGAATATGCTCATAAGAATTCTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCAGGATATGTGTTTATTAGAAGAATATGCTCATAAGAATTCTAA  365

seq1  TGGTAGATTTTTGCTGCCTAGAACAATAACAAAACTATGCTTTTCAATGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGATTTTTGCTGCCTAGAACAATAACAAAACTATGCTTTTCAATGA  415

seq1  TCTGATATAAAGACTATGTCAAGAGATGAGAAAGAATGAAAGGTTAGAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATATAAAGACTATGTCAAGAGATGAGAAAGAATGAAAGGTTAGAAT  465

seq1  GTTTGACAGCAAATCTAAATTAAAAGAAGAAAAACTCCACTCCAGTTACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACAGCAAATCTAAATTAAAAGAAGAAAAACTCCACTCCAGTTACT  515

seq1  GACCTGGTAGAGCATGGCTTTGAATGCCGAGTGTCTTAATCTCATGGCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGTAGAGCATGGCTTTGAATGCCGAGTGTCTTAATCTCATGGCTA  565

seq1  AATTTTCCTCTGCTCTGCCATAAAACAATCCCTAGGGAACAAACAGAACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCTCTGCTCTGCCATAAAACAATCCCTAGGGAACAAACAGAACA  615

seq1  GTCCACACTTATTCTTAAATCTCTTTGTATCATTCAGTTATGGATGTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACACTTATTCTTAAATCTCTTTGTATCATTCAGTTATGGATGTTTT  665

seq1  TAATCGGAACAGAGAAGATAATGTAAACATGTAACCCTGCCCAGGGCTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCGGAACAGAGAAGATAATGTAAACATGTAACCCTGCCCAGGGCTGA  715

seq1  TTAGTCAATTAAAGGTTTACCTGCATCAAGTAGGTGACAAGAGCTACTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCAATTAAAGGTTTACCTGCATCAAGTAGGTGACAAGAGCTACTAT  765

seq1  GCCCAAGACGACTAACATCATGGAGTAGAGCTCTGCATCCTGCTTTAATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGACGACTAACATCATGGAGTAGAGCTCTGCATCCTGCTTTAATG  815

seq1  TAGCTTTATTTTTATCTTCAAACATCTGAGAAGAAACAGAGTTTCCTTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTATTTTTATCTTCAAACATCTGAGAAGAAACAGAGTTTCCTTCA  865

seq1  GAAGCTTGGAGGAAAGTGTAAACAGAAAACAAAACCAACCTCTCTTAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTGGAGGAAAGTGTAAACAGAAAACAAAACCAACCTCTCTTAAAA  915

seq1  CATCTATATACATCAGGATTTTCTACAGGAATTGCAAAAGGTAAAGAAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATATACATCAGGATTTTCTACAGGAATTGCAAAAGGTAAAGAAAA  965

seq1  AGCTATGCATTTCTGGGCAAACAAACAAAATAAAACAATAACTATTATTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGCATTTCTGGGCAAACAAACAAAATAAAACAATAACTATTATTC  1015

seq1  CCTTGCCTACTTTAAATACATATGGTAAAATAAACTTACTTTTAATTGCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCTACTTTAAATACATATGGTAAAATAAACTTACTTTTAATTGCC  1065

seq1  TGCATTTGCTTGGTAAATATATCAGACAAATGTATCATAGTACATTTTCC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTGCTTGGTAAATATATCAGACAAATGTATCATAGTACATTTTCC  1115

seq1  TTTTTTATTATTATTTGAATTC  1171
      ||||||||||||||||||||||
seq2  TTTTTTATTATTATTTGAATTC  1137

seq1: chr12_119978287_119978673
seq2: B6Ng01-072L17.g_69_455

seq1  GAATTCTTTGGCCATTGATGAAGTGCTATACAGCTCTCACAGAAAGGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGCCATTGATGAAGTGCTATACAGCTCTCACAGAAAGGGCA  50

seq1  GAAGATTTCCAACTGAAAATTACTTTCACTAAATACCGCAAAGATATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTTCCAACTGAAAATTACTTTCACTAAATACCGCAAAGATATTGA  100

seq1  AGGCAGAGAGCAGGTGGAGATGGGACAAATGACAGCAGTGTCTAACAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGAGCAGGTGGAGATGGGACAAATGACAGCAGTGTCTAACAATG  150

seq1  AACCTCTCAGTTCTCTGGGCTGGCAGACAAGACTGATTAGAGTAAGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTCAGTTCTCTGGGCTGGCAGACAAGACTGATTAGAGTAAGAACA  200

seq1  TGAAATAATGTTTTCTTAAAGCCAGGGAGCATATTGTATAAAGTGTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAATGTTTTCTTAAAGCCAGGGAGCATATTGTATAAAGTGTCAGG  250

seq1  TACAAAGAGTTTGTATGTTCTTTGTGGTGAATTGAGAACCTGGTGCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGAGTTTGTATGTTCTTTGTGGTGAATTGAGAACCTGGTGCTGCA  300

seq1  GACTGTACCCACAGTGTGGCTGTCACAGCTACCAGGCCAAAGTGTACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTACCCACAGTGTGGCTGTCACAGCTACCAGGCCAAAGTGTACACA  350

seq1  TGCAAATTCTGGTGAGGAAAGAGGGATGGGGGGGGGT  387
      |||||||||||||||||||||||||||||||||||||
seq2  TGCAAATTCTGGTGAGGAAAGAGGGATGGGGGGGGGT  387