BAC Information

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BAC

Clone NameB6Ng01-075A01
Chromosome12 (Build37)
Map Location 31,017,063 - 31,150,831
singlet/doubletdoublet
Overlap geneSntg2
Upstream geneMyt1l, LOC100043496, Pxdn, Tpo
Downstream geneTmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075A01.bB6Ng01-075A01.g
ACCDH891689DH891690
length1,0101,087
definitionDH891689|Mus musculus domesticus DNA, BAC clone: B6Ng01-075A01, 5' end.DH891690|Mus musculus domesticus DNA, BAC clone: B6Ng01-075A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,150,201 - 31,150,831)(31,017,063 - 31,018,147)
sequence
gaattcaactagtgccttccctaggcagagatctgaaatattccctaaaa
agtctggaaagtgtaacagtagaaaaagttttcttcagataaaagaatta
ttaactttaactttccatctaaaacgctgaaatgtagccagactttttac
tattttgtgggttcttctttcttctacccttttaaccccctaacactaga
tagcagagaaaaatgatggggaaggggacatgttatcattagactacttc
ctgctgattagaggcattgagttccttggggcaagttgagccttcaccat
cagaatatctaatttcttatttttgtttctcctttttgctcaacccactt
aacaaaccacaaccaccaacaaccccccaccaccaacaaccccccaccaa
caaaaaccctaactctcaggtccctagcatttataccctctcaagagtcc
ttagaattccaaacatcacacaattgcagaaacaatctgtagctggaaaa
aaaaatcacactgctccaggagacaaatcagagtcaggtgttgtggataa
tctgaagcagccccatatcccacacctgggattaaaacaaaaacatattt
ttataatattcctataatttttttaagaaacaaaagtgccaacattgtca
ctacattgaagtctgaaaatacatttaaaatctgaaagactacagcagcc
acagaagaaacgtgaccccaggagaacaatcagttcccatgggaatgatg
tgcacagacatcagcaggaaagactgtggttattcctgacactgtggcta
cagaacagccaggaagctcttcaggtctacagcaaagctcattttctgtt
cttatttgtaatcgtttaccacagaccttagacaattggccaaaccaaat
cctccactccatcagaggcccttctatcacctttccaaagctcctctgag
tccattctcttaacttttgattttttaaaaaataattttcagctccttac
agagaatccc
gaattcaaagaaaaatacctaaattagtttttatttggcagatgaaatca
agaaatttgtattcaaagagacacggtatcctgttcatctgatgtctttg
ttggacaggtccacatggttttgggggtggcacacctgaaggaaaagact
gagatagtctctaagttgaaaggcttgagaaatgtagatcaagtagtctc
agggaaaggggaaaggtctgggagaaaggagccaaggaactgcaaagtca
gagaaggaggacatagtggacaggcagtagatgaagactggaaggagcca
ggcactaaggccgtggagctgaataacgttggagacagagaaggcatccc
cacattgggatgcccacaggaatcacctggtgctggagctcaatcaccca
gggaaatccaagagttatggcttttacagctgtctccacattctgttggg
gaagacagaggatggttagagccaaggcaaggatgcaggagtgagaccct
gcaggatgtatggctagaatcagaaagaagggagggtggccatgttcaag
ccagtggcaggttccagaggaacataacatgggtgtgatcccaacaacgt
actgtgttcttctaattctggatgtcctagccaagcagccaagcccacag
cgttccctccaacagttgtaaagaatttcaagctcagtgtctgcactggg
ctaggctacctatcaaatacccctagacagacacagctccatatgttaat
catgaaggggagccacaggtattgtccccagtggtgtaaatagaagtgga
gcttacattttttccacaatccagagaaaataaaataaacacattcttga
agattctgctttaaaatgtgtagagacctaaagtctcaactagtgggatc
tccaccttttctaatgctgcaatcctttaacacaagttcctcaagctgtg
gtgacttccaaccacaaattactctatgctatttcataacctgtaacttt
atattttatgaattgtaaatttgatatgcacgattttgaattattgcgaa
cacaggttgagaaacggttgctttaagacaatagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_31150201_31150831
seq2: B6Ng01-075A01.b_45_675 (reverse)

seq1  GTTTCTTAAAAAAATTATAGGAATATTATAAAAATATGTTTTTGTTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTAAAAAAATTATAGGAATATTATAAAAATATGTTTTTGTTTTAA  50

seq1  TCCCAGGTGTGGGATATGGGGCTGCTTCAGATTATCCACAACACCTGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGTGTGGGATATGGGGCTGCTTCAGATTATCCACAACACCTGACT  100

seq1  CTGATTTGTCTCCTGGAGCAGTGTGATTTTTTTTTCCAGCTACAGATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTGTCTCCTGGAGCAGTGTGATTTTTTTTTCCAGCTACAGATTGT  150

seq1  TTCTGCAATTGTGTGATGTTTGGAATTCTAAGGACTCTTGAGAGGGTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAATTGTGTGATGTTTGGAATTCTAAGGACTCTTGAGAGGGTATA  200

seq1  AATGCTAGGGACCTGAGAGTTAGGGTTTTTGTTGGTGGGGGGTTGTTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAGGGACCTGAGAGTTAGGGTTTTTGTTGGTGGGGGGTTGTTGGT  250

seq1  GGTGGGGGGTTGTTGGTGGTTGTGGTTTGTTAAGTGGGTTGAGCAAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGGTTGTTGGTGGTTGTGGTTTGTTAAGTGGGTTGAGCAAAAAG  300

seq1  GAGAAACAAAAATAAGAAATTAGATATTCTGATGGTGAAGGCTCAACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACAAAAATAAGAAATTAGATATTCTGATGGTGAAGGCTCAACTTG  350

seq1  CCCCAAGGAACTCAATGCCTCTAATCAGCAGGAAGTAGTCTAATGATAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGGAACTCAATGCCTCTAATCAGCAGGAAGTAGTCTAATGATAAC  400

seq1  ATGTCCCCTTCCCCATCATTTTTCTCTGCTATCTAGTGTTAGGGGGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCCTTCCCCATCATTTTTCTCTGCTATCTAGTGTTAGGGGGTTAA  450

seq1  AAGGGTAGAAGAAAGAAGAACCCACAAAATAGTAAAAAGTCTGGCTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTAGAAGAAAGAAGAACCCACAAAATAGTAAAAAGTCTGGCTACAT  500

seq1  TTCAGCGTTTTAGATGGAAAGTTAAAGTTAATAATTCTTTTATCTGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCGTTTTAGATGGAAAGTTAAAGTTAATAATTCTTTTATCTGAAGA  550

seq1  AAACTTTTTCTACTGTTACACTTTCCAGACTTTTTAGGGAATATTTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTTCTACTGTTACACTTTCCAGACTTTTTAGGGAATATTTCAGA  600

seq1  TCTCTGCCTAGGGAAGGCACTAGTTGAATTC  631
      |||||||||||||||||||||||||||||||
seq2  TCTCTGCCTAGGGAAGGCACTAGTTGAATTC  631

seq1: chr12_31017063_31018147
seq2: B6Ng01-075A01.g_67_1153

seq1  GAATTCAAAGAAAAATACCTAAATTAGTTTTTATTTGGCAGATGAAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAAAAATACCTAAATTAGTTTTTATTTGGCAGATGAAATCA  50

seq1  AGAAATTTGTATTCAAAGAGACACGGTATCCTGTTCATCTGATGTCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTGTATTCAAAGAGACACGGTATCCTGTTCATCTGATGTCTTTG  100

seq1  TTGGACAGGTCCACATGGTTTTGGGGGTGGCACACCTGAAGGAAAAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACAGGTCCACATGGTTTTGGGGGTGGCACACCTGAAGGAAAAGACT  150

seq1  GAGATAGTCTCTAAGTTGAAAGGCTTGAGAAATGTAGATCAAGTAGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGTCTCTAAGTTGAAAGGCTTGAGAAATGTAGATCAAGTAGTCTC  200

seq1  AGGGAAAGGGGAAAGGTCTGGGAGAAAGGAGCCAAGGAACTGCAAAGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGGGGAAAGGTCTGGGAGAAAGGAGCCAAGGAACTGCAAAGTCA  250

seq1  GAGAAGGAGGACATAGTGGACAGGCAGTAGATGAAGACTGGAAGGAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGAGGACATAGTGGACAGGCAGTAGATGAAGACTGGAAGGAGCCA  300

seq1  GGCACTAAGGCCGTGGAGCTGAATAACGTTGGAGACAGAGAAGGCATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTAAGGCCGTGGAGCTGAATAACGTTGGAGACAGAGAAGGCATCCC  350

seq1  CACATTGGGATGCCCACAGGAATCACCTGGTGCTGGAGCTCAATCACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGGGATGCCCACAGGAATCACCTGGTGCTGGAGCTCAATCACCCA  400

seq1  GGGAAATCCAAGAGTTATGGCTTTTACAGCTGTCTCCACATTCTGTTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATCCAAGAGTTATGGCTTTTACAGCTGTCTCCACATTCTGTTGGG  450

seq1  GAAGACAGAGGATGGTTAGAGCCAAGGCAAGGATGCAGGAGTGAGACCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGAGGATGGTTAGAGCCAAGGCAAGGATGCAGGAGTGAGACCCT  500

seq1  GCAGGATGTATGGCTAGAATCAGAAAGAAGGGAGGGTGGCCATGTTCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATGTATGGCTAGAATCAGAAAGAAGGGAGGGTGGCCATGTTCAAG  550

seq1  CCAGTGGCAGGTTCCAGAGGAACATAACATGGGTGTGATCCCAACAACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGCAGGTTCCAGAGGAACATAACATGGGTGTGATCCCAACAACGT  600

seq1  ACTGTGTTCTTCTAATTCTGGATGTCCTAGCCAAGCAGCCAAGCCCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTTCTTCTAATTCTGGATGTCCTAGCCAAGCAGCCAAGCCCACAG  650

seq1  CGTTCCCTCCAACAGTTGTAAAGAATTTCAAGCTCAGTGTCTGCACTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCCTCCAACAGTTGTAAAGAATTTCAAGCTCAGTGTCTGCACTGGG  700

seq1  CTAGGCTACCTATCAAATACCCCTAGACAGACACAGCTCCATATGTTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTACCTATCAAATACCCCTAGACAGACACAGCTCCATATGTTAAT  750

seq1  CATGAAGGGGAGCCACAGGTATTGTCCCCAGTGGTGTAAATAGAAGTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGGGGAGCCACAGGTATTGTCCCCAGTGGTGTAAATAGAAGTGGA  800

seq1  GCTTACA-TTTTTCCACAATCCAGAGAAAATAAAATAAACACATTCTTGA  849
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACATTTTTTCCACAATCCAGAGAAAATAAAATAAACACATTCTTGA  850

seq1  AGATTCTGCTTTAAAATGTGTAGAGACCTAAAGTCTCAACTAGT-GGATC  898
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGATTCTGCTTTAAAATGTGTAGAGACCTAAAGTCTCAACTAGTGGGATC  900

seq1  TCCACC-TTTCTAATGCTGCAATCCTTTAACAC-AGTTCCTCAAGCTGTG  946
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCACCTTTTCTAATGCTGCAATCCTTTAACACAAGTTCCTCAAGCTGTG  950

seq1  GTGACTTCCAACCACAAAATTACTCTATTGCTATTTCATAA-CTGTAACT  995
      ||||||||||||||| ||||||||||| ||||||||||||| ||||||||
seq2  GTGACTTCCAACCAC-AAATTACTCTA-TGCTATTTCATAACCTGTAACT  998

seq1  TTATATTTTTATGAATTGTAAATATTTGATATGCACGATATTTGATATA-  1044
      ||||| |||||||||||||||  |||||||||||||||| |||||  || 
seq2  TTATA-TTTTATGAATTGTAA--ATTTGATATGCACGAT-TTTGAATTAT  1044

seq1  TGCGAACCACAGGTTGAGAAAC-GTTGCTTT-AGACAAT-GATA  1085
      |||||| ||||||||||||||| |||||||| ||||||| ||||
seq2  TGCGAA-CACAGGTTGAGAAACGGTTGCTTTAAGACAATAGATA  1087