BAC Information

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BAC

Clone NameB6Ng01-076H16
Chromosome12 (Build37)
Map Location 117,677,867 - 117,678,889
singlet/doubletsinglet
Overlap geneNcapg2
Upstream geneIgh, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik
Downstream geneRnu7-ps1, Ptprn2, LOC627375, LOC432713, LOC100042461
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076H16.bB6Ng01-076H16.g
ACCDH892734DH892735
length1,2371,022
definitionDH892734|Mus musculus domesticus DNA, BAC clone: B6Ng01-076H16, 5' end.DH892735|Mus musculus domesticus DNA, BAC clone: B6Ng01-076H16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccttacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaaggaagtgaaagatctgtatgatgaaaacttcaaatct
ctgaagaaagaaattaaggaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatca
ccatgccagacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcacaattggtgctggc
acaactggttgttatcgtgtagaagatgcgaatcgatccatacttatctc
cttgtactagtcaaatctaagtggatcaggacttccaaataaaccagaga
aactgaacttaatgaggagaaagtggggaaaagctgaagattgggcacag
gaaaaattctgacagaacagcatgccttgtggctgtagatcggatggcaa
ttggactaatgactcaaagtcgcaggctaagaccgtcaatagacaaagga
cccctaccgattggaaaggaatccttatcctattctg
gaattcattgttccccaagcgcccttcggaatcttttttttttcctgtgc
tgccaccctgactacctcttgtatgattctccactgaacagtccttattg
ataccacccaggatggtggttcagaggagcctgccttgaggaaatggact
gtggtatttgtgggtagtggttctgtggccccgtgaacctgccaactatg
ttgtgtgcttctgatgctcagcaggtagtgctaggtgcaaggatggcagc
ccaagctgcactgctataaataaccctcttgtgggcctgtagacaaggca
ctttccaccttgttttgatgtagtcacatgtcactcagtgtgggctctgg
cttgtaatttttcaggcagaactggaatcatttcttcagtctccaagtgg
gaatcctctcaacttcaacaaagcaactgccctgcatgcctttggtctgt
actgtaggatgagtgtccatcttcagtacaaggtatgctgtctgattctt
gtgctttaagcattatgtatcaaagctgcttttgttattcattagcttcc
ttgttgtgttggatagttctgctcagaagagaaaattcatctgtccatct
tggatgacactgggtcttggttagaaaacaaagttttacctcttcttgaa
gaccaagaagaggagtatctgaagcttcggaaggatgtttatcaacagat
aatccaggtcagcagctgagatacaaagcttgttctcttgaccctttgct
gtattttcttgatggcttattttgttgtaaagtggttttatacccttata
ttgctttacaatacctaaaatggcattctttttacaaaacacaatataca
taatttgaatcagtttaacatgttgcacatgaacgggcatttggctaggt
tggtggatttgaatacactgtctatagagttcttataaaaacaatgaaaa
tatgtattaatggaaattcctttagcaatatagttgtagacgtcttgtta
ttaaattaagtataacacatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_117677867_117678889
seq2: B6Ng01-076H16.g_68_1089

seq1  GAATTCATTGTTCCCCAAGCGCCCTTCGGAATCTTTTTTTTTTCCTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTCCCCAAGCGCCCTTCGGAATCTTTTTTTTTTCCTGTGC  50

seq1  TGCCACCCTGACTACCTCTTGTATGATTCTCCACTGAACAGTCCTTATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCCTGACTACCTCTTGTATGATTCTCCACTGAACAGTCCTTATTG  100

seq1  ATACCACCCAGGATGGTGGTTCAGAGGAGCCTGCCTTGAGGAAATGGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACCCAGGATGGTGGTTCAGAGGAGCCTGCCTTGAGGAAATGGACT  150

seq1  GTGGTATTTGTGGGTAGTGGTTCTGTGGCCCCGTGAACCTGCCAACTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTATTTGTGGGTAGTGGTTCTGTGGCCCCGTGAACCTGCCAACTATG  200

seq1  TTGTGTGCTTCTGATGCTCAGCAGGTAGTGCTAGGTGCAAGGATGGCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGCTTCTGATGCTCAGCAGGTAGTGCTAGGTGCAAGGATGGCAGC  250

seq1  CCAAGCTGCACTGCTATAAATAACCCTCTTGTGGGCCTGTAGACAAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTGCACTGCTATAAATAACCCTCTTGTGGGCCTGTAGACAAGGCA  300

seq1  CTTTCCACCTTGTTTTGATGTAGTCACATGTCACTCAGTGTGGGCTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCACCTTGTTTTGATGTAGTCACATGTCACTCAGTGTGGGCTCTGG  350

seq1  CTTGTAATTTTTCAGGCAGAACTGGAATCATTTCTTCAGTCTCCAAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAATTTTTCAGGCAGAACTGGAATCATTTCTTCAGTCTCCAAGTGG  400

seq1  GAATCCTCTCAACTTCAACAAAGCAACTGCCCTGCATGCCTTTGGTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTCTCAACTTCAACAAAGCAACTGCCCTGCATGCCTTTGGTCTGT  450

seq1  ACTGTAGGATGAGTGTCCATCTTCAGTACAAGGTATGCTGTCTGATTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGGATGAGTGTCCATCTTCAGTACAAGGTATGCTGTCTGATTCTT  500

seq1  GTGCTTTAAGCATTATGTATCAAAGCTGCTTTTGTTATTCATTAGCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTAAGCATTATGTATCAAAGCTGCTTTTGTTATTCATTAGCTTCC  550

seq1  TTGTTGTGTTGGATAGTTCTGCTCAGAAGAGAAAATTCATCTGTCCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTGTTGGATAGTTCTGCTCAGAAGAGAAAATTCATCTGTCCATCT  600

seq1  TGGATGACACTGGGTCTTGGTTAGAAAACAAAGTTTTACCTCTTCTTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGACACTGGGTCTTGGTTAGAAAACAAAGTTTTACCTCTTCTTGAA  650

seq1  GACCAAGAAGAGGAGTATCTGAAGCTTCGGAAGGATGTTTATCAACAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGAAGAGGAGTATCTGAAGCTTCGGAAGGATGTTTATCAACAGAT  700

seq1  AATCCAGGTCAGCAGCTGAGATACAAAGCTTGTTCTCTTGACCCTTTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGGTCAGCAGCTGAGATACAAAGCTTGTTCTCTTGACCCTTTGCT  750

seq1  GTATTTTCTTGATGGCTTATTTTGTTGTAAAGTGGTTTTATACCCTTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTCTTGATGGCTTATTTTGTTGTAAAGTGGTTTTATACCCTTATA  800

seq1  TTGCTTTACAATACCTAAAATGGCATTTCTTTTTACAAAACACAATATAC  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTGCTTTACAATACCTAAAATGGCA-TTCTTTTTACAAAACACAATATAC  849

seq1  ATAATTTGAATTCAGTTTAACATGTTGCACATGAACGGGCATTTGGCTAG  900
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTGAA-TCAGTTTAACATGTTGCACATGAACGGGCATTTGGCTAG  898

seq1  GTTGGTGGAATTGAATACACTGTCTATAGAGTTCTTATAAAAACAATGAA  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGGATTTGAATACACTGTCTATAGAGTTCTTATAAAAACAATGAA  948

seq1  AATATGTATTTATGGAAATTCCTTTAGCAATATAGTTGTAGACGTCTTGT  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AATATGTATTAATGGAAATTCCTTTAGCAATATAGTTGTAGACGTCTTGT  998

seq1  TATAAAATT-AGTATATCACATCT  1023
      ||| ||||| |||||| |||||||
seq2  TATTAAATTAAGTATAACACATCT  1022