BAC Information

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BAC

Clone NameB6Ng01-077I24
Chromosome12 (Build37)13 (Build37)
Map Location 108,966,459 - 108,967,137108,124,013 - 108,125,083
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC673604, LOC100040484, LOC382635, LOC100041251, LOC100040497, LOC668151
Downstream geneBcl11b, Setd3, Ccnk, EG668158, 1600002O04Rik, Cyp46a1, Eml1, Evl, Degs2, LOC668164
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077I24.bB6Ng01-077I24.g
ACCDH893503DH893504
length7081,078
definitionDH893503|Mus musculus domesticus DNA, BAC clone: B6Ng01-077I24, 5' end.DH893504|Mus musculus domesticus DNA, BAC clone: B6Ng01-077I24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(108,966,459 - 108,967,137)(108,124,013 - 108,125,083)
sequence
gaattcactgggaggtggggggtagggttgccctgcaagtatgtggtgca
cacgcatgcacataccttcacacacacacaaaaaaatgttttttaattta
aaaaaataaaaaaaaagaatgggacatgccaatcacacttaagtctcctg
gggtgacaagcctgttcccactggtaatgtggcagttgcttctcatctag
aagctattttaaactagaatatagattgtcctattccgtcctgttcacag
atcaaacccaggaggcaaattattcagaggaatatgagtcaccggcccct
ggagagtaccttctgagccatgactccccacccactggcaacccttaagg
atccatcctttcttacagccattgcttatcacaggcctgctaagaccaag
cagcatcacacaggcgtgctggactccacgtccatcctggaggtaactta
gggactctcctgacctgctggggaccattgcaaaggctgcatgtcagcac
atcctcacccacaccaagccttcagaccaccagtcccagagactctgccg
gctctgagacccaggtcttccattttctttagatgaattgcctaagcaat
cccccttagcagagcctctctctctccaaatgtgaaaaagcaggctttga
ctattcggggtgacaagttccaaccctgaatgcctgggggggggggggaa
ctgatcaa
gaattctgcatagcgacacactattggcttattcaaacatcaacagaaaa
attacatgtacgtgaagggtgtcagagttctgtgagttgttgactcagtt
cagatagccctgttatgtcctcacattcctctttatctttcaggttaagc
tgttcccaggaatgttttaactacgggacatacccaggtttgtttttctt
tttcctcagccccaggcagcctctaggctcacaaacaagcagcaatttct
gagtactttatatgacttacaggtcttgaaatttcatctttctttcatac
ccagagaaccacctcaacagcctattggcttgtttagttgttttgtttgg
tttgattttaaaccagttataggttttgatcgccttaaaaatatgtttca
gtttcagtttcttcttaattctctgatgaaatgataacttctttttggaa
ataaaagtcaccatgaaaagtctttctccagtaccttccccataactgta
tttaaatccggatctctcttcctcccacccagttgggcactggggtaggt
gttccttcttgctctttggggttcacaatccaaccaaccacagtctcacc
attcctggggcccattccttcagtcccagacaccctacacattcaccttc
tagttgcacagggttgactgtaaataccatcttaattctttaaaatatac
acaaaactgggaggatttttagccccaaacattgcccctattaccttgcc
ttttttttttttttttaagaagtcttttattctgccacccagccaagctt
tttctcccctgctgttttgtaactttccagtgtagctcctgccagggaag
caaccaagcttgcttctcacactccagacacagtaatgaccccagtattg
acctatctaatgaacatggcttcatctatatcctactttttcccagtgtt
ggctcacagaccactcttcctgctgatgctcagtgtctttgcctaaggga
tgtgacttttctttaagtcctttgcccttctaaagctggtccctcagctt
ttctttattcacctcctctgtacactcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_108966459_108967137
seq2: B6Ng01-077I24.b_75_753

seq1  GCCCTGCAAGTATGTGGTGCACACGCATGCACATACCTTCACACACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCAAGTATGTGGTGCACACGCATGCACATACCTTCACACACACAC  50

seq1  AAAAAAATGTTTTTTAATTTAAAAAAATAAAAAAAAAGAATGGGACATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATGTTTTTTAATTTAAAAAAATAAAAAAAAAGAATGGGACATGC  100

seq1  CAATCACACTTAAGTCTCCTGGGGTGACAAGCCTGTTCCCACTGGTAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACACTTAAGTCTCCTGGGGTGACAAGCCTGTTCCCACTGGTAATG  150

seq1  TGGCAGTTGCTTCTCATCTAGAAGCTATTTTAAACTAGAATATAGATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTTGCTTCTCATCTAGAAGCTATTTTAAACTAGAATATAGATTGT  200

seq1  CCTATTCCGTCCTGTTCACAGATCAAACCCAGGAGGCAAATTATTCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCCGTCCTGTTCACAGATCAAACCCAGGAGGCAAATTATTCAGAG  250

seq1  GAATATGAGTCACCGGCCCCTGGAGAGTACCTTCTGAGCCATGACTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGAGTCACCGGCCCCTGGAGAGTACCTTCTGAGCCATGACTCCCC  300

seq1  ACCCACTGGCAACCCTTAAGGATCCATCCTTTCTTACAGCCATTGCTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTGGCAACCCTTAAGGATCCATCCTTTCTTACAGCCATTGCTTAT  350

seq1  CACAGGCCTGCTAAGACCAAGCAGCATCACACAGGCGTGCTGGACTCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCCTGCTAAGACCAAGCAGCATCACACAGGCGTGCTGGACTCCAC  400

seq1  GTCCATCCTGGAGGTAACTTAGGGACTCTCCTGACCTGCTGGGGACCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCCTGGAGGTAACTTAGGGACTCTCCTGACCTGCTGGGGACCATT  450

seq1  GCAAAGGCTGCATGTCAGCACATCCTCACCCACACCAAGCCTTCAGACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGCTGCATGTCAGCACATCCTCACCCACACCAAGCCTTCAGACCA  500

seq1  CCAGTCCCAGAGACTCTGCCGGCTCTGAGACCCAGGTCTTCCATTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCCAGAGACTCTGCCGGCTCTGAGACCCAGGTCTTCCATTTTCTT  550

seq1  TAGATGAATTGCCTAAGCAATCCCCCTTAGCAGAGCCTCTCTCTCTCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAATTGCCTAAGCAATCCCCCTTAGCAGAGCCTCTCTCTCTCCAA  600

seq1  ATGTGAAAAAGCAGGCTTTGACTATTCGGGGTGACAAGTTCCAACCCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAAAAGCAGGCTTTGACTATTCGGGGTGACAAGTTCCAACCCTGA  650

seq1  ATGCCTGGGGGGGGGGGGGAACTGATCAA  679
      |||||||||||||||||||||||||||||
seq2  ATGCCTGGGGGGGGGGGGGAACTGATCAA  679

seq1: chr13_108124013_108125083
seq2: B6Ng01-077I24.g_68_1145 (reverse)

seq1  GGAG-GTACAGAGG-GGTGAATAAAG-AAAGCTGA-GGACCAGCTCTAAG  46
      |||| ||||||||| ||||||||||| |||||||| ||||||||| ||  
seq2  GGAGTGTACAGAGGAGGTGAATAAAGAAAAGCTGAGGGACCAGCTTTAGA  50

seq1  AAGGCAAA-GACTGTAAAGAAATGTCACATCCC-TAAGCAAAGACACTGA  94
      | |||||| |||| |||||||| |||||||||| || |||||||||||||
seq2  AGGGCAAAGGACT-TAAAGAAAAGTCACATCCCTTAGGCAAAGACACTGA  99

seq1  GCATCAAGCAGGAAGAGTGGTCTGTGAGCCAACACTGTGGAAAAGTAAGA  144
      ||||| ||||||||||||||||||||||||||||||| | ||||||| ||
seq2  GCATC-AGCAGGAAGAGTGGTCTGTGAGCCAACACTGGGAAAAAGTAGGA  148

seq1  TATAGATGAAGCCATGTTCATTAGATAGGTCAATACTGGGGTCATTACTG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATGAAGCCATGTTCATTAGATAGGTCAATACTGGGGTCATTACTG  198

seq1  TGTCTGGAGTTGTGAG-AGC-AGCTTGGTTGCTTCCCTGGCAGGAGCTAC  242
      ||||||||| |||||| ||| |||||||||||||||||||||||||||||
seq2  TGTCTGGAG-TGTGAGAAGCAAGCTTGGTTGCTTCCCTGGCAGGAGCTAC  247

seq1  ACTGGGAAGTTACAAAACAGCAGGGGAGAAAAAGCTTGGCTGGGTGGCAG  292
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAAGTTACAAAACAGCAGGGGAGAAAAAGCTTGGCTGGGTGGCAG  297

seq1  AATAAAAGACTACT--AAAAAAAAAAAAAAAGGCAAGGTAATAGGGGCAA  340
      ||||||||||| ||  ||||||||||||||||||||||||||||||||||
seq2  AATAAAAGACTTCTTAAAAAAAAAAAAAAAAGGCAAGGTAATAGGGGCAA  347

seq1  TGTTTGGGGCTAAAAATCCTCCCAGTTTTGTGTATATTTTAAAGAATTAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGGGCTAAAAATCCTCCCAGTTTTGTGTATATTTTAAAGAATTAA  397

seq1  GATGGTATTTACAGTCAACCCTGTGCAACTAGAAGGTGAATGTGTAGGGT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTATTTACAGTCAACCCTGTGCAACTAGAAGGTGAATGTGTAGGGT  447

seq1  GTCTGGGACTGAAGGAATGGGCCCCAGGAATGGTGAGACTGTGGTTGGTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGACTGAAGGAATGGGCCCCAGGAATGGTGAGACTGTGGTTGGTT  497

seq1  GGATTGTGAACCCCAAAGAGCAAGAAGGAACACCTACCCCAGTGCCCAAC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTGAACCCCAAAGAGCAAGAAGGAACACCTACCCCAGTGCCCAAC  547

seq1  TGGGTGGGAGGAAGAGAGATCCGGATTTAAATACAGTTATGGGGAAGGTA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGGAGGAAGAGAGATCCGGATTTAAATACAGTTATGGGGAAGGTA  597

seq1  CTGGAGAAAGACTTTTCATGGTGACTTTTATTTCCAAAAAGAAGTTATCA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAAAGACTTTTCATGGTGACTTTTATTTCCAAAAAGAAGTTATCA  647

seq1  TTTCATCAGAGAATTAAGAAGAAACTGAAACTGAAACATATTTTTAAGGC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCAGAGAATTAAGAAGAAACTGAAACTGAAACATATTTTTAAGGC  697

seq1  GATCAAAACCTATAACTGGTTTAAAATCAAACCAAACAAAACAACTAAAC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAACCTATAACTGGTTTAAAATCAAACCAAACAAAACAACTAAAC  747

seq1  AAGCCAATAGGCTGTTGAGGTGGTTCTCTGGGTATGAAAGAAAGATGAAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAATAGGCTGTTGAGGTGGTTCTCTGGGTATGAAAGAAAGATGAAA  797

seq1  TTTCAAGACCTGTAAGTCATATAAAGTACTCAGAAATTGCTGCTTGTTTG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGACCTGTAAGTCATATAAAGTACTCAGAAATTGCTGCTTGTTTG  847

seq1  TGAGCCTAGAGGCTGCCTGGGGCTGAGGAAAAAGAAAAACAAACCTGGGT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTAGAGGCTGCCTGGGGCTGAGGAAAAAGAAAAACAAACCTGGGT  897

seq1  ATGTCCCGTAGTTAAAACATTCCTGGGAACAGCTTAACCTGAAAGATAAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCGTAGTTAAAACATTCCTGGGAACAGCTTAACCTGAAAGATAAA  947

seq1  GAGGAATGTGAGGACATAACAGGGCTATCTGAACTGAGTCAACAACTCAC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATGTGAGGACATAACAGGGCTATCTGAACTGAGTCAACAACTCAC  997

seq1  AGAACTCTGACACCCTGCACGTACATGTAATTTTTCTGTTGATGTTTGAA  1040
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGAACTCTGACACCCTTCACGTACATGTAATTTTTCTGTTGATGTTTGAA  1047

seq1  TAAGCCAATAGTGTGTCGCTATGCTGAATTC  1071
      |||||||||||||||||||||||| ||||||
seq2  TAAGCCAATAGTGTGTCGCTATGCAGAATTC  1078