BAC Information

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BAC

Clone NameB6Ng01-078K02
Chromosome12 (Build37)
Map Location 31,843,242 - 31,844,332
singlet/doubletsinglet
Overlap geneLOC100043065
Upstream geneSntg2, Tmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781
Downstream geneLOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078K02.bB6Ng01-078K02.g
ACCDH894274DH894275
length1,0711,125
definitionDH894274|Mus musculus domesticus DNA, BAC clone: B6Ng01-078K02, 5' end.DH894275|Mus musculus domesticus DNA, BAC clone: B6Ng01-078K02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgctgtgcttctgaagggttcgttctgcttttaggaaatgcag
caacataaaaaaaaaaaaaatccatcttctcggaaatcgaaaactaaaca
tttaaagtacttgagcaaagtttattccataatgactagacgattttaac
ttgctaatgcattgggagagggacaaagaaagaaatctcgtacctgtagg
gactaaagttaatctgtaagtcccacttgacaaggacaggtaagttcctg
gaatgctataggctattgtacctgtacgacaatgagtcacatgttttcac
tctggtaaacaagggctgcttgccccaactgcacaggatgctcttgtcca
catgtaggtgggaggcacataggcaggaagtacaccaggatgtatgcttg
tccccactggaccacagaggaaagtaccatagccttgtgggttcagcctt
tctgagcacccgatgaacattttctgcgagctccagggatggacctggcc
agaatgaaataaagcttgctttaattggacagttgtgggtttggtctttc
tcctcacaattttcaggtttaatagtacccccaaactgaaatttaaaaaa
atcattctttgcaaacaaatttcttcatgagatgctgtaacacgtataga
gtttcccttgcatttattagaataaaaccctccagtcacttctataaagc
tctgtctattcaaaaccaagtagtttagggagttcagggtgaggtggagt
ggggtactctagtcaggcccgtcatttgatgtcattaaaacaagtgttgg
gttgtcagttcagaatccttcaagtttctattgtttattattggattgtg
actagcgataaaaatcttatggatgaacaacattgagttttgtttaattt
ggaaagaattaaagagaaacattttttccctaatcaaacagttgcttcag
aaaggaagataaactgtatccatctaaacgtagccagaggggaagctgtc
tctatttagactacatgaggtcattttggagtgtaggaatagctaattat
gcaaaagtagtctttggatga
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagataaaaaattcaggtgacagc
agatgctagcgaggatgtggagaaagaggaacactcctccattcctggtg
ggaaatcggtctggcggttcctcagaaaactggatatagtactaccggag
gatcctgcaatacctctcatgggcatatatccagaagatgttccaactgg
taagaaggacacatgctccactatgttcatagcagccttatttataatag
ccagaagctggaaagaacccagatgcccctcaacagaggaatggatacag
aaaatgtggtacatatacacaatggagtactactcagctattaaaaagaa
tgaatttatgaaattcctaggcaaatggatggacctggagggtatcatcc
tgagtgaggtaacccaatcacaaaggaactcacacaatatgtactcactg
ataagtggatattagcccagaaacttaggatacccaagatataagataca
atttgctaaacgcatgaaactgaagaagaacgaagtccaaagtgtggaca
ctttgccccttcttagaattgggaacaaaacacccatggaaggagttaca
gagacaaagtttggagctgtgtcaaaaagatggaccatctagagcctgcc
atatccagggttccatcccataatcagcttccaaacactgacaccatttg
catacactagtaagattttgctgaaaggacccagatgtagctgtctcttg
tgagactatgccggggcctagcaaacacagcagtgaatgctcacagtcag
ctattggatagatcacaggccccaatggaggagctagagaaagtacacag
agctaaagggatctgcaccctatagtagacattatgactaccagtacccg
gagctttgactctagctgcattgtatcaagatgcctagtcgcatcctgaa
gagagccattgactgccacttatatgccaagtacagggacgcaaggccat
atgtgatgtggtgggttaggatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_31843242_31844332
seq2: B6Ng01-078K02.b_38_1108 (reverse)

seq1  TCATCCAAAAGACTACTTTTGTGCATAATTAGGCTATGTCCTACAACTCC  50
      |||||| ||||||||||||  |||||||||| ||||| |||||| |||||
seq2  TCATCC-AAAGACTACTTT--TGCATAATTA-GCTAT-TCCTAC-ACTCC  44

seq1  AAGATGACCCTTCATGTAGGTCCTAAATAGAGACCAGCTTCCCCCTCTGG  100
      || ||||||  ||||||||   ||||||||||| |||||| |||||||||
seq2  AAAATGACC--TCATGTAG--TCTAAATAGAGA-CAGCTT-CCCCTCTGG  88

seq1  CTACGTTTTAGATGGATACAGTTTTATTCTTTCCTTTCTGGAAGCAACTG  150
      ||||| ||||||||||||||| |||||   ||||||||| ||||||||||
seq2  CTACG-TTTAGATGGATACAG-TTTAT--CTTCCTTTCT-GAAGCAACTG  133

seq1  GTTTTGATTAGGGAAAAAATGTTTTCTCTTTAATTCTTTCCAAATTAAAC  200
        ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  --TTTGATTAGGGAAAAAATG-TTTCTCTTTAATTCTTTCCAAATTAAAC  180

seq1  AAAACTCAATGTTGTTCATCCATAAGATTTTTATCGCTAGTCACAATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCAATGTTGTTCATCCATAAGATTTTTATCGCTAGTCACAATCCA  230

seq1  ATAATAAACAATAGAAACTTGAAGGATTCTGAACTGACAACCCAACACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAACAATAGAAACTTGAAGGATTCTGAACTGACAACCCAACACTT  280

seq1  GTTTTAATGACATCAAATGACGGGCCTGACTAGAGTACCCCACTCCACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATGACATCAAATGACGGGCCTGACTAGAGTACCCCACTCCACCT  330

seq1  CACCCTGAACTCCCTAAACTACTTGGTTTTGAATAGACAGAGCTTTATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGAACTCCCTAAACTACTTGGTTTTGAATAGACAGAGCTTTATAG  380

seq1  AAGTGACTGGAGGGTTTTATTCTAATAAATGCAAGGGAAACTCTATACGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTGGAGGGTTTTATTCTAATAAATGCAAGGGAAACTCTATACGT  430

seq1  GTTACAGCATCTCATGAAGAAATTTGTTTGCAAAGAATGATTTTTTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGCATCTCATGAAGAAATTTGTTTGCAAAGAATGATTTTTTTAAA  480

seq1  TTTCAGTTTGGGGGTACTATTAAACCTGAAAATTGTGAGGAGAAAGACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTTGGGGGTACTATTAAACCTGAAAATTGTGAGGAGAAAGACCA  530

seq1  AACCCACAACTGTCCAATTAAAGCAAGCTTTATTTCATTCTGGCCAGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACAACTGTCCAATTAAAGCAAGCTTTATTTCATTCTGGCCAGGTC  580

seq1  CATCCCTGGAGCTCGCAGAAAATGTTCATCGGGTGCTCAGAAAGGCTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTGGAGCTCGCAGAAAATGTTCATCGGGTGCTCAGAAAGGCTGAA  630

seq1  CCCACAAGGCTATGGTACTTTCCTCTGTGGTCCAGTGGGGACAAGCATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAGGCTATGGTACTTTCCTCTGTGGTCCAGTGGGGACAAGCATAC  680

seq1  ATCCTGGTGTACTTCCTGCCTATGTGCCTCCCACCTACATGTGGACAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGTGTACTTCCTGCCTATGTGCCTCCCACCTACATGTGGACAAGA  730

seq1  GCATCCTGTGCAGTTGGGGCAAGCAGCCCTTGTTTACCAGAGTGAAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTGTGCAGTTGGGGCAAGCAGCCCTTGTTTACCAGAGTGAAAACA  780

seq1  TGTGACTCATTGTCGTACAGGTACAATAGCCTATAGCATTCCAGGAACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCATTGTCGTACAGGTACAATAGCCTATAGCATTCCAGGAACTT  830

seq1  ACCTGTCCTTGTCAAGTGGGACTTACAGATTAACTTTAGTCCCTACAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCCTTGTCAAGTGGGACTTACAGATTAACTTTAGTCCCTACAGGT  880

seq1  ACGAGATTTCTTTCTTTGTCCCTCTCCCAATGCATTAGCAAGTTAAAATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGATTTCTTTCTTTGTCCCTCTCCCAATGCATTAGCAAGTTAAAATC  930

seq1  GTCTAGTCATTATGGAATAAACTTTGCTCAAGTACTTTAAATGTTTAGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGTCATTATGGAATAAACTTTGCTCAAGTACTTTAAATGTTTAGTT  980

seq1  TTCGATTTCCGAGAAGATGGATTTTTTTTTTTTTTATGTTGCTGCATTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATTTCCGAGAAGATGGATTTTTTTTTTTTTTATGTTGCTGCATTTC  1030

seq1  CTAAAAGCAGAACGAACCCTTCAGAAGCACAGCAAGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGCAGAACGAACCCTTCAGAAGCACAGCAAGAATTC  1071