BAC Information

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BAC

Clone NameB6Ng01-078L23
Chromosome12 (Build37)
Map Location 112,791,925 - 112,936,078
singlet/doubletdoublet
Overlap geneMark3, Ckb, 6720458F09Rik
Upstream genePpp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5
Downstream geneBag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078L23.bB6Ng01-078L23.g
ACCDH894360DH894361
length212457
definitionDH894360|Mus musculus domesticus DNA, BAC clone: B6Ng01-078L23, 5' end.DH894361|Mus musculus domesticus DNA, BAC clone: B6Ng01-078L23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,791,925 - 112,792,136)(112,935,616 - 112,936,078)
sequence
cagcacctggaagacagagaggcgaggcaggagagtctctgagtttgagg
ccagcctggtctacagagtgaattccaggacacccaaagatacacagaga
gccctgactggtgtgtgtgtgtgtgtggggggggaatccagcttcattaa
gatcataggagacaggctggagagatggctcaacggttaagagctctgac
tgctcttctgaa
tcatggcacgtgagcccagagagccaagcactctacttctctgcagcctg
agcccagtcctggtctatcctgtctatcagctggctgagcaggctcccag
tgccccttgtgctcggatgcatggtcccctttttcttctgatactgcagt
ttccatccgtccacggaaggtcatcttttgactcttactcctgaccaaag
aaaaagcagacatcccagaactgacatggttactggaagggacctaaggc
cagggccatgtgagagcctcggcagggacaagcaggcgatgagaacagcc
agtgcaaaaagcctccaggctcattaagaatctgcagagctggatccctg
gacttcagactgtaggcacaggcacgccaaggggcatcttgtcatttccc
aagaatgggccatgagggtgtggggctggagcaatgtctcaggggggggg
ggggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_112791925_112792136
seq2: B6Ng01-078L23.b_53_264

seq1  CAGCACCTGGAAGACAGAGAGGCGAGGCAGGAGAGTCTCTGAGTTTGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTGGAAGACAGAGAGGCGAGGCAGGAGAGTCTCTGAGTTTGAGG  50

seq1  CCAGCCTGGTCTACAGAGTGAATTCCAGGACACCCAAAGATACACAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGTCTACAGAGTGAATTCCAGGACACCCAAAGATACACAGAGA  100

seq1  GCCCTGACTGGTGTGTGTGTGTGTGTGGGGGGGGAATCCAGCTTCATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGACTGGTGTGTGTGTGTGTGTGGGGGGGGAATCCAGCTTCATTAA  150

seq1  GATCATAGGAGACAGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGAC  200
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  GATCATAGGAGACAGGCTGGAGAGATGGCTCAACGGTTAAGAGCTCTGAC  200

seq1  TGCTCTTCTGAA  212
      ||||||||||||
seq2  TGCTCTTCTGAA  212

seq1: chr12_112935616_112936078
seq2: B6Ng01-078L23.g_73_535 (reverse)

seq1  CTTCCCCCCCCCCCCCTGAGACATTGCTCCAGCCCCACACCCTCATGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCCCCCCCCCCTGAGACATTGCTCCAGCCCCACACCCTCATGGCC  50

seq1  CATTCTTGGGAAATGACAAGATGCCCCTTGGCGTGCCTGTGCCTACAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTGGGAAATGACAAGATGCCCCTTGGCGTGCCTGTGCCTACAGTC  100

seq1  TGAAGTCCAGGGATCCAGCTCTGCAGATTCTTAATGAGCCTGGAGGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCCAGGGATCCAGCTCTGCAGATTCTTAATGAGCCTGGAGGCTTT  150

seq1  TTGCACTGGCTGTTCTCATCGCCTGCTTGTCCCTGCCGAGGCTCTCACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTGGCTGTTCTCATCGCCTGCTTGTCCCTGCCGAGGCTCTCACAT  200

seq1  GGCCCTGGCCTTAGGTCCCTTCCAGTAACCATGTCAGTTCTGGGATGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGGCCTTAGGTCCCTTCCAGTAACCATGTCAGTTCTGGGATGTCT  250

seq1  GCTTTTTCTTTGGTCAGGAGTAAGAGTCAAAAGATGACCTTCCGTGGACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTCTTTGGTCAGGAGTAAGAGTCAAAAGATGACCTTCCGTGGACG  300

seq1  GATGGAAACTGCAGTATCAGAAGAAAAAGGGGACCATGCATCCGAGCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAACTGCAGTATCAGAAGAAAAAGGGGACCATGCATCCGAGCACA  350

seq1  AGGGGCACTGGGAGCCTGCTCAGCCAGCTGATAGACAGGATAGACCAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCACTGGGAGCCTGCTCAGCCAGCTGATAGACAGGATAGACCAGGA  400

seq1  CTGGGCTCAGGCTGCAGAGAAGTAGAGTGCTTGGCTCTCTGGGCTCACGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTCAGGCTGCAGAGAAGTAGAGTGCTTGGCTCTCTGGGCTCACGT  450

seq1  GCCATGAGAATTC  463
      |||||||||||||
seq2  GCCATGAGAATTC  463